Wall clock time and date at job start Mon Mar 30 2020 06:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 110.35395 * 2 1 4 4 C 1.54598 * 110.30489 * 122.13736 * 2 1 3 5 5 C 1.54940 * 102.91819 * 140.87010 * 4 2 1 6 6 N 1.48808 * 103.35227 * 322.68928 * 5 4 2 7 7 C 1.39854 * 111.18924 * 159.50178 * 6 5 4 8 8 C 1.39594 * 119.83783 * 296.79052 * 7 6 5 9 9 C 1.38070 * 120.54732 * 179.71481 * 8 7 6 10 10 C 1.38733 * 120.21581 * 0.55419 * 9 8 7 11 11 N 1.38866 * 120.15820 * 179.74946 * 10 9 8 12 12 C 1.41559 * 119.67643 * 359.71681 * 10 9 8 13 13 C 1.41021 * 120.26892 * 179.97438 * 12 10 9 14 14 H 1.08007 * 120.00262 * 329.67939 * 13 12 10 15 15 C 1.39891 * 120.00038 * 149.67659 * 13 12 10 16 16 N 1.30894 * 119.99995 * 345.00945 * 15 13 12 17 17 Si 1.86798 * 119.99796 * 165.00801 * 15 13 12 18 18 H 1.48501 * 109.47302 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.47165 * 120.00351 * 17 15 13 20 20 H 1.48497 * 109.47627 * 239.99917 * 17 15 13 21 21 C 1.38000 * 119.83957 * 117.05429 * 7 6 5 22 22 C 1.47913 * 105.67492 * 38.97499 * 6 5 4 23 23 H 1.08996 * 109.91236 * 94.35990 * 22 6 5 24 24 C 1.52995 * 109.91254 * 215.45175 * 22 6 5 25 25 H 1.08996 * 109.47326 * 182.14988 * 1 2 3 26 26 H 1.08999 * 109.46937 * 302.14652 * 1 2 3 27 27 H 1.09001 * 109.46945 * 62.14408 * 1 2 3 28 28 H 1.08995 * 110.72345 * 259.22822 * 4 2 1 29 29 H 1.09000 * 110.72769 * 22.33729 * 4 2 1 30 30 H 1.08997 * 110.66545 * 81.02129 * 5 4 2 31 31 H 1.08996 * 110.66647 * 203.98212 * 5 4 2 32 32 H 1.08001 * 119.73181 * 359.97438 * 8 7 6 33 33 H 1.07998 * 119.89120 * 180.26940 * 9 8 7 34 34 H 0.97000 * 119.99618 * 185.19941 * 11 10 9 35 35 H 0.96999 * 120.00468 * 5.19532 * 11 10 9 36 36 H 0.96997 * 119.99891 * 175.02298 * 16 15 13 37 37 H 1.08007 * 120.11646 * 0.02562 * 21 7 6 38 38 H 1.09008 * 109.47143 * 178.19631 * 24 22 6 39 39 H 1.09003 * 109.47194 * 58.20238 * 24 22 6 40 40 H 1.09001 * 109.47710 * 298.19662 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9091 1.0219 0.0000 4 6 2.0665 -0.7713 1.2278 5 6 3.2854 -1.5349 0.6516 6 7 2.8341 -1.9237 -0.7120 7 6 3.9226 -2.2074 -1.5430 8 6 4.8410 -1.2025 -1.8520 9 6 5.9241 -1.4679 -2.6661 10 6 6.1048 -2.7373 -3.1961 11 7 7.1917 -3.0015 -4.0189 12 6 5.1761 -3.7619 -2.8933 13 6 5.3473 -5.0565 -3.4257 14 1 5.8267 -5.1870 -4.3847 15 6 4.8963 -6.1717 -2.7116 16 7 4.5885 -6.0568 -1.4445 17 14 4.7333 -7.8246 -3.5663 18 1 5.1414 -7.6892 -4.9878 19 1 5.6079 -8.8183 -2.8932 20 1 3.3218 -8.2806 -3.4974 21 6 4.0806 -3.4780 -2.0578 22 6 2.0644 -0.7684 -1.2228 23 1 2.7134 -0.1218 -1.8132 24 6 0.8969 -1.2588 -2.0814 25 1 -0.3634 -1.0269 0.0385 26 1 -0.3633 0.5468 0.8701 27 1 -0.3633 0.4802 -0.9086 28 1 2.3790 -0.0805 2.0108 29 1 1.3160 -1.4659 1.6051 30 1 4.1562 -0.8819 0.5942 31 1 3.5063 -2.4166 1.2531 32 1 4.7055 -0.2103 -1.4477 33 1 6.6305 -0.6837 -2.8948 34 1 7.2755 -3.8671 -4.4487 35 1 7.8672 -2.3206 -4.1640 36 1 4.2078 -6.8109 -0.9677 37 1 3.3655 -4.2518 -1.8203 38 1 0.3161 -0.4037 -2.4275 39 1 0.2596 -1.9144 -1.4879 40 1 1.2828 -1.8075 -2.9405 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380659159.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:45 Heat of formation + Delta-G solvation = 22.133047 kcal Electronic energy + Delta-G solvation = -19916.789288 eV Core-core repulsion = 17116.531561 eV Total energy + Delta-G solvation = -2800.257727 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.46209 -37.36056 -34.00378 -33.44312 -31.57492 -30.69222 -29.48903 -27.51864 -25.63235 -24.58791 -24.41529 -21.48924 -20.93596 -19.64465 -18.51157 -17.11586 -16.20780 -15.57791 -15.48525 -14.83097 -14.49970 -13.91646 -13.80249 -13.38401 -12.91229 -12.67309 -12.39051 -12.18994 -11.98601 -11.70206 -11.42282 -11.34727 -11.23639 -11.08522 -11.00820 -10.79051 -10.46622 -10.42930 -10.21566 -10.08634 -9.85257 -9.52947 -9.05339 -8.94443 -7.62665 -7.30682 -6.63378 -6.15476 -4.09334 2.83168 3.13218 3.16837 3.20037 3.24249 4.06491 4.66984 4.72802 4.97607 5.09703 5.20475 5.27545 5.64641 5.68956 5.72865 5.75511 5.84314 5.99310 6.07050 6.14986 6.18511 6.23807 6.28659 6.37690 6.42862 6.46187 6.54191 6.66881 6.80985 7.05936 7.11022 7.28321 7.57593 7.60064 7.62689 7.73126 8.04791 8.19234 8.38605 8.69642 8.90711 8.93292 9.13303 9.20233 10.40907 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.021405 B = 0.006415 C = 0.005530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.762581 B = 4363.964855 C = 5062.224480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.100 4.100 3 H 0.066 0.934 4 C -0.119 4.119 5 C 0.043 3.957 6 N -0.464 5.464 7 C 0.041 3.959 8 C -0.212 4.212 9 C -0.176 4.176 10 C 0.120 3.880 11 N -0.884 5.884 12 C 0.066 3.934 13 C -0.468 4.468 14 H 0.070 0.930 15 C 0.078 3.922 16 N -0.802 5.802 17 Si 0.899 3.101 18 H -0.264 1.264 19 H -0.278 1.278 20 H -0.274 1.274 21 C -0.097 4.097 22 C 0.068 3.932 23 H 0.054 0.946 24 C -0.132 4.132 25 H 0.062 0.938 26 H 0.045 0.955 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.042 0.958 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.391 0.609 35 H 0.376 0.624 36 H 0.276 0.724 37 H 0.120 0.880 38 H 0.049 0.951 39 H 0.060 0.940 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.364 7.460 1.837 8.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.120 4.120 3 H 0.085 0.915 4 C -0.157 4.157 5 C -0.084 4.084 6 N -0.185 5.185 7 C -0.054 4.054 8 C -0.234 4.234 9 C -0.201 4.201 10 C 0.018 3.982 11 N -0.425 5.425 12 C 0.061 3.939 13 C -0.500 4.500 14 H 0.088 0.912 15 C -0.138 4.138 16 N -0.429 5.429 17 Si 0.724 3.276 18 H -0.188 1.188 19 H -0.204 1.204 20 H -0.200 1.200 21 C -0.118 4.118 22 C -0.040 4.040 23 H 0.072 0.928 24 C -0.190 4.190 25 H 0.081 0.919 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.061 0.939 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.220 0.780 35 H 0.201 0.799 36 H 0.087 0.913 37 H 0.138 0.862 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.776 6.825 2.114 8.595 hybrid contribution 0.878 -0.086 -0.518 1.023 sum -3.898 6.739 1.597 7.947 Atomic orbital electron populations 1.21912 0.94956 1.02042 1.00793 1.22015 0.96020 0.98549 0.95373 0.91539 1.22576 0.98071 0.98483 0.96568 1.23229 0.95594 0.98673 0.90870 1.62381 1.20367 1.34719 1.01014 1.18487 0.92277 0.94663 0.99992 1.20485 0.98964 0.97460 1.06489 1.19836 1.00283 0.94511 1.05430 1.18043 0.89588 0.93930 0.96622 1.41911 1.26155 1.18135 1.56348 1.17170 0.90623 0.91701 0.94449 1.19071 1.36433 0.90201 1.04273 0.91179 1.25686 0.93687 1.00393 0.94012 1.69840 1.32446 1.32957 1.07650 0.86426 0.78590 0.82100 0.80469 1.18822 1.20389 1.19956 1.20778 0.97374 0.93662 1.00032 1.22465 0.95443 0.91293 0.94823 0.92835 1.21792 0.97354 1.00210 0.99636 0.91911 0.93572 0.92618 0.91939 0.91009 0.93932 0.90446 0.89896 0.89685 0.78009 0.79876 0.91281 0.86201 0.93220 0.92139 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 7.92 37.16 0.29 -1.37 16 2 C -0.10 -1.41 3.59 -89.26 -0.32 -1.73 16 3 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 4 C -0.12 -1.70 6.61 -24.87 -0.16 -1.86 16 5 C 0.04 0.78 6.45 -1.74 -0.01 0.77 16 6 N -0.46 -9.44 4.91 -159.51 -0.78 -10.22 16 7 C 0.04 0.95 4.86 -83.78 -0.41 0.54 16 8 C -0.21 -4.78 7.90 -39.14 -0.31 -5.09 16 9 C -0.18 -4.00 9.87 -39.46 -0.39 -4.39 16 10 C 0.12 2.86 6.79 -83.23 -0.56 2.30 16 11 N -0.88 -17.76 8.97 32.75 0.29 -17.47 16 12 C 0.07 1.74 5.52 -106.66 -0.59 1.15 16 13 C -0.47 -12.25 8.41 -37.91 -0.32 -12.57 16 14 H 0.07 1.75 6.79 -52.48 -0.36 1.39 16 15 C 0.08 1.98 5.15 -17.33 -0.09 1.89 16 16 N -0.80 -21.28 11.19 55.55 0.62 -20.66 16 17 Si 0.90 19.08 29.59 -169.99 -5.03 14.05 16 18 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 19 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 20 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 21 C -0.10 -2.54 8.55 -38.75 -0.33 -2.87 16 22 C 0.07 1.17 2.86 -66.64 -0.19 0.98 16 23 H 0.05 0.99 6.28 -51.93 -0.33 0.67 16 24 C -0.13 -2.14 8.36 37.15 0.31 -1.82 16 25 H 0.06 0.79 6.75 -51.93 -0.35 0.43 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.62 6.74 -51.93 -0.35 0.27 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 1.00 7.84 -51.93 -0.41 0.60 16 30 H 0.04 0.78 7.03 -51.93 -0.36 0.42 16 31 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 32 H 0.08 1.73 7.02 -52.49 -0.37 1.36 16 33 H 0.08 1.72 8.06 -52.49 -0.42 1.30 16 34 H 0.39 7.71 7.11 -40.82 -0.29 7.42 16 35 H 0.38 6.36 8.84 -40.82 -0.36 6.00 16 36 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 37 H 0.12 3.35 6.50 -52.48 -0.34 3.01 16 38 H 0.05 0.67 6.81 -51.92 -0.35 0.32 16 39 H 0.06 0.96 6.70 -51.93 -0.35 0.61 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 310.30 15.07 4.68 4.68 Total: -1.00 -27.80 310.30 -9.19 -36.99 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: -5.89 Total: 16.71 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: -3.08 Total: -24.09 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: 0.13 Total: -48.34 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -27.80 -9.19 -36.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380659159.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.123 kcal (2) G-P(sol) polarization free energy of solvation -27.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds