Wall clock time and date at job start Mon Mar 30 2020 06:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 110.35395 * 2 1 4 4 C 1.54598 * 110.30489 * 122.13736 * 2 1 3 5 5 C 1.54940 * 102.91819 * 140.87010 * 4 2 1 6 6 N 1.48808 * 103.35227 * 322.68928 * 5 4 2 7 7 C 1.39854 * 111.18924 * 159.50178 * 6 5 4 8 8 C 1.39594 * 119.83783 * 296.79052 * 7 6 5 9 9 C 1.38070 * 120.54732 * 179.71481 * 8 7 6 10 10 C 1.38733 * 120.21581 * 0.55419 * 9 8 7 11 11 N 1.38866 * 120.15820 * 179.74946 * 10 9 8 12 12 C 1.41559 * 119.67643 * 359.71681 * 10 9 8 13 13 C 1.41021 * 120.26892 * 179.97438 * 12 10 9 14 14 H 1.08007 * 120.00262 * 329.67939 * 13 12 10 15 15 C 1.39891 * 120.00038 * 149.67659 * 13 12 10 16 16 N 1.30894 * 119.99995 * 345.00945 * 15 13 12 17 17 Si 1.86798 * 119.99796 * 165.00801 * 15 13 12 18 18 H 1.48501 * 109.47302 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.47165 * 120.00351 * 17 15 13 20 20 H 1.48497 * 109.47627 * 239.99917 * 17 15 13 21 21 C 1.38000 * 119.83957 * 117.05429 * 7 6 5 22 22 C 1.47913 * 105.67492 * 38.97499 * 6 5 4 23 23 H 1.08996 * 109.91236 * 94.35990 * 22 6 5 24 24 C 1.52995 * 109.91254 * 215.45175 * 22 6 5 25 25 H 1.08996 * 109.47326 * 182.14988 * 1 2 3 26 26 H 1.08999 * 109.46937 * 302.14652 * 1 2 3 27 27 H 1.09001 * 109.46945 * 62.14408 * 1 2 3 28 28 H 1.08995 * 110.72345 * 259.22822 * 4 2 1 29 29 H 1.09000 * 110.72769 * 22.33729 * 4 2 1 30 30 H 1.08997 * 110.66545 * 81.02129 * 5 4 2 31 31 H 1.08996 * 110.66647 * 203.98212 * 5 4 2 32 32 H 1.08001 * 119.73181 * 359.97438 * 8 7 6 33 33 H 1.07998 * 119.89120 * 180.26940 * 9 8 7 34 34 H 0.97000 * 119.99618 * 185.19941 * 11 10 9 35 35 H 0.96999 * 120.00468 * 5.19532 * 11 10 9 36 36 H 0.96997 * 119.99891 * 175.02298 * 16 15 13 37 37 H 1.08007 * 120.11646 * 0.02562 * 21 7 6 38 38 H 1.09008 * 109.47143 * 178.19631 * 24 22 6 39 39 H 1.09003 * 109.47194 * 58.20238 * 24 22 6 40 40 H 1.09001 * 109.47710 * 298.19662 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9091 1.0219 0.0000 4 6 2.0665 -0.7713 1.2278 5 6 3.2854 -1.5349 0.6516 6 7 2.8341 -1.9237 -0.7120 7 6 3.9226 -2.2074 -1.5430 8 6 4.8410 -1.2025 -1.8520 9 6 5.9241 -1.4679 -2.6661 10 6 6.1048 -2.7373 -3.1961 11 7 7.1917 -3.0015 -4.0189 12 6 5.1761 -3.7619 -2.8933 13 6 5.3473 -5.0565 -3.4257 14 1 5.8267 -5.1870 -4.3847 15 6 4.8963 -6.1717 -2.7116 16 7 4.5885 -6.0568 -1.4445 17 14 4.7333 -7.8246 -3.5663 18 1 5.1414 -7.6892 -4.9878 19 1 5.6079 -8.8183 -2.8932 20 1 3.3218 -8.2806 -3.4974 21 6 4.0806 -3.4780 -2.0578 22 6 2.0644 -0.7684 -1.2228 23 1 2.7134 -0.1218 -1.8132 24 6 0.8969 -1.2588 -2.0814 25 1 -0.3634 -1.0269 0.0385 26 1 -0.3633 0.5468 0.8701 27 1 -0.3633 0.4802 -0.9086 28 1 2.3790 -0.0805 2.0108 29 1 1.3160 -1.4659 1.6051 30 1 4.1562 -0.8819 0.5942 31 1 3.5063 -2.4166 1.2531 32 1 4.7055 -0.2103 -1.4477 33 1 6.6305 -0.6837 -2.8948 34 1 7.2755 -3.8671 -4.4487 35 1 7.8672 -2.3206 -4.1640 36 1 4.2078 -6.8109 -0.9677 37 1 3.3655 -4.2518 -1.8203 38 1 0.3161 -0.4037 -2.4275 39 1 0.2596 -1.9144 -1.4879 40 1 1.2828 -1.8075 -2.9405 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380659159.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:44 Heat of formation + Delta-G solvation = 5.700961 kcal Electronic energy + Delta-G solvation = -19917.501837 eV Core-core repulsion = 17116.531561 eV Total energy + Delta-G solvation = -2800.970275 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.96081 -39.05817 -35.59218 -35.29015 -33.05291 -32.06017 -31.39172 -29.00539 -27.30443 -26.30168 -25.65797 -23.19394 -22.56061 -21.26371 -19.89593 -18.85913 -17.92218 -17.28704 -17.12592 -16.52914 -15.99183 -15.25417 -15.19009 -14.67572 -14.60523 -14.32000 -14.12470 -13.83204 -13.37868 -13.20905 -13.03743 -12.96370 -12.77723 -12.59691 -12.31627 -12.24442 -12.14888 -11.70939 -11.64215 -11.38886 -11.35122 -11.28089 -10.94472 -10.66256 -9.23313 -9.19443 -8.53160 -7.95104 -6.05623 1.01115 1.26712 1.40989 1.50571 1.54136 2.27867 2.83489 3.25172 3.61729 3.69828 3.79118 3.95372 4.05458 4.36763 4.47805 4.52036 4.55359 4.64416 4.69666 4.83794 4.87525 4.91887 4.98768 5.05041 5.17401 5.19554 5.21705 5.29830 5.33243 5.38687 5.45464 5.59724 5.70559 5.80172 5.92319 6.15243 6.18582 6.33145 6.47800 6.91303 7.01531 7.08899 7.31490 7.53304 8.52692 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.021405 B = 0.006415 C = 0.005530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.762581 B = 4363.964855 C = 5062.224480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.093 4.093 3 H 0.083 0.917 4 C -0.108 4.108 5 C 0.038 3.962 6 N -0.484 5.484 7 C 0.041 3.959 8 C -0.208 4.208 9 C -0.183 4.183 10 C 0.112 3.888 11 N -0.872 5.872 12 C 0.031 3.969 13 C -0.494 4.494 14 H 0.074 0.926 15 C 0.034 3.966 16 N -0.840 5.840 17 Si 0.972 3.028 18 H -0.257 1.257 19 H -0.273 1.273 20 H -0.273 1.273 21 C -0.123 4.123 22 C 0.063 3.937 23 H 0.040 0.960 24 C -0.127 4.127 25 H 0.052 0.948 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.038 0.962 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.114 0.886 34 H 0.393 0.607 35 H 0.394 0.606 36 H 0.279 0.721 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.817 9.062 1.960 10.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.112 4.112 3 H 0.101 0.899 4 C -0.145 4.145 5 C -0.088 4.088 6 N -0.206 5.206 7 C -0.054 4.054 8 C -0.229 4.229 9 C -0.207 4.207 10 C 0.009 3.991 11 N -0.415 5.415 12 C 0.026 3.974 13 C -0.526 4.526 14 H 0.092 0.908 15 C -0.178 4.178 16 N -0.468 5.468 17 Si 0.794 3.206 18 H -0.180 1.180 19 H -0.198 1.198 20 H -0.198 1.198 21 C -0.145 4.145 22 C -0.045 4.045 23 H 0.058 0.942 24 C -0.184 4.184 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.108 0.892 29 H 0.093 0.907 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.121 0.879 33 H 0.132 0.868 34 H 0.222 0.778 35 H 0.222 0.778 36 H 0.089 0.911 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.079 0.921 40 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -5.205 8.450 2.223 10.170 hybrid contribution 1.039 -0.468 -0.532 1.257 sum -4.166 7.982 1.691 9.161 Atomic orbital electron populations 1.21874 0.93020 1.01992 1.02395 1.22017 0.97565 0.98572 0.93084 0.89874 1.22550 0.96177 0.98559 0.97253 1.23267 0.97395 0.98378 0.89787 1.62349 1.19687 1.36856 1.01672 1.18602 0.93246 0.93893 0.99706 1.20752 0.98393 0.98022 1.05757 1.20183 1.00825 0.94774 1.04953 1.18197 0.90077 0.93924 0.96868 1.41798 1.25553 1.18812 1.55304 1.17511 0.91582 0.92818 0.95479 1.19322 1.37690 0.90862 1.04689 0.90752 1.26517 0.93011 1.03891 0.94423 1.69932 1.33607 1.34149 1.09090 0.85321 0.78440 0.77353 0.79494 1.18029 1.19815 1.19795 1.20671 0.97585 0.94275 1.01919 1.22582 0.95107 0.90375 0.96413 0.94154 1.21778 0.97277 1.01072 0.98304 0.92846 0.91385 0.91600 0.89161 0.90724 0.94411 0.92235 0.87880 0.86789 0.77797 0.77830 0.91067 0.89222 0.90122 0.92067 0.95816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 7.92 71.98 0.57 -2.20 16 2 C -0.09 -2.36 3.59 -9.92 -0.04 -2.39 16 3 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 4 C -0.11 -2.82 6.61 31.80 0.21 -2.61 16 5 C 0.04 1.37 6.45 86.60 0.56 1.93 16 6 N -0.48 -19.96 4.91 -658.56 -3.23 -23.20 16 7 C 0.04 1.96 4.86 38.13 0.19 2.14 16 8 C -0.21 -9.27 7.90 22.56 0.18 -9.09 16 9 C -0.18 -8.12 9.87 22.35 0.22 -7.90 16 10 C 0.11 5.38 6.79 38.97 0.26 5.64 16 11 N -0.87 -34.41 8.97 -50.31 -0.45 -34.86 16 12 C 0.03 1.71 5.52 -21.19 -0.12 1.59 16 13 C -0.49 -26.64 8.41 23.35 0.20 -26.44 16 14 H 0.07 3.78 6.79 -2.91 -0.02 3.76 16 15 C 0.03 1.76 5.15 85.23 0.44 2.20 16 16 N -0.84 -46.53 11.19 21.82 0.24 -46.29 16 17 Si 0.97 40.08 29.59 68.60 2.03 42.11 16 18 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 19 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 20 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 21 C -0.12 -6.75 8.55 22.81 0.19 -6.56 16 22 C 0.06 2.10 2.86 45.05 0.13 2.23 16 23 H 0.04 1.45 6.28 -2.39 -0.02 1.44 16 24 C -0.13 -4.02 8.36 71.98 0.60 -3.42 16 25 H 0.05 1.20 6.75 -2.39 -0.02 1.18 16 26 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.07 1.22 6.74 -2.39 -0.02 1.20 16 28 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.07 1.93 7.84 -2.39 -0.02 1.91 16 30 H 0.04 1.37 7.03 -2.39 -0.02 1.35 16 31 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.10 4.13 7.02 -2.91 -0.02 4.11 16 33 H 0.11 4.32 8.06 -2.91 -0.02 4.30 16 34 H 0.39 15.36 7.11 -92.71 -0.66 14.70 16 35 H 0.39 12.64 8.84 -92.71 -0.82 11.82 16 36 H 0.28 14.29 8.30 -92.71 -0.77 13.52 16 37 H 0.09 5.38 6.50 -2.91 -0.02 5.36 16 38 H 0.08 2.01 6.81 -2.38 -0.02 2.00 16 39 H 0.06 1.91 6.70 -2.39 -0.02 1.89 16 40 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -62.39 310.30 1.76 -60.63 By element: Atomic # 1 Polarization: 46.89 SS G_CDS: -0.42 Total: 46.47 kcal Atomic # 6 Polarization: -48.47 SS G_CDS: 3.60 Total: -44.87 kcal Atomic # 7 Polarization: -100.90 SS G_CDS: -3.44 Total: -104.34 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.11 kcal Total: -62.39 1.76 -60.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380659159.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.331 kcal (2) G-P(sol) polarization free energy of solvation -62.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds