Wall clock time and date at job start Mon Mar 30 2020 06:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.59649 * 2 1 4 4 C 1.54928 * 110.67123 * 236.99202 * 2 1 3 5 5 H 1.09009 * 110.72534 * 322.51125 * 4 2 1 6 6 C 1.53007 * 110.72580 * 85.79173 * 4 2 1 7 7 C 1.54599 * 102.92344 * 204.15381 * 4 2 1 8 8 C 1.53988 * 105.13744 * 21.95806 * 7 4 2 9 9 N 1.47898 * 107.22760 * 1.12526 * 8 7 4 10 10 C 1.39856 * 110.99983 * 214.25440 * 9 8 7 11 11 C 1.39595 * 119.83976 * 239.60098 * 10 9 8 12 12 C 1.38064 * 120.54968 * 179.76120 * 11 10 9 13 13 C 1.38732 * 120.21537 * 0.51478 * 12 11 10 14 14 N 1.38869 * 120.16084 * 179.76099 * 13 12 11 15 15 C 1.41566 * 119.67918 * 359.74177 * 13 12 11 16 16 C 1.41021 * 120.26868 * 180.02562 * 15 13 12 17 17 H 1.08005 * 120.00291 * 333.59405 * 16 15 13 18 18 C 1.39891 * 119.99653 * 153.59720 * 16 15 13 19 19 N 1.30899 * 120.00003 * 343.99651 * 18 16 15 20 20 Si 1.86800 * 119.99813 * 164.00457 * 18 16 15 21 21 H 1.48501 * 109.47266 * 59.99905 * 20 18 16 22 22 H 1.48499 * 109.46867 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47048 * 299.99356 * 20 18 16 24 24 C 1.38009 * 119.83744 * 59.87565 * 10 9 8 25 25 H 1.08999 * 109.46950 * 183.00530 * 1 2 3 26 26 H 1.08995 * 109.47388 * 303.00626 * 1 2 3 27 27 H 1.09001 * 109.46694 * 63.01028 * 1 2 3 28 28 H 1.08994 * 109.47089 * 174.95361 * 6 4 2 29 29 H 1.08995 * 109.46792 * 294.95799 * 6 4 2 30 30 H 1.08997 * 109.46393 * 54.95955 * 6 4 2 31 31 H 1.09000 * 110.30742 * 263.04109 * 7 4 2 32 32 H 1.09002 * 110.30987 * 140.87427 * 7 4 2 33 33 H 1.09000 * 109.91667 * 120.58398 * 8 7 4 34 34 H 1.09005 * 109.91316 * 241.67267 * 8 7 4 35 35 H 1.07998 * 119.73013 * 0.02562 * 11 10 9 36 36 H 1.07998 * 119.89171 * 180.27850 * 12 11 10 37 37 H 0.96997 * 119.99693 * 185.28220 * 14 13 12 38 38 H 0.96994 * 119.99954 * 5.29221 * 14 13 12 39 39 H 0.96998 * 119.99908 * 175.02174 * 19 18 16 40 40 H 1.08002 * 120.11440 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9134 1.0203 0.0000 4 6 2.0769 -0.7896 -1.2156 5 1 1.4562 -1.6622 -1.4197 6 6 2.1698 0.1110 -2.4490 7 6 3.4853 -1.2185 -0.7440 8 6 3.4278 -1.1660 0.7939 9 7 2.0559 -0.7585 1.1673 10 6 2.0642 0.0315 2.3213 11 6 1.3634 -0.3862 3.4540 12 6 1.3657 0.3798 4.6027 13 6 2.0581 1.5814 4.6392 14 7 2.0556 2.3533 5.7936 15 6 2.7677 2.0166 3.4941 16 6 3.4762 3.2356 3.5177 17 1 3.1678 4.0267 4.1852 18 6 4.5785 3.4203 2.6764 19 7 5.1462 2.3882 2.1054 20 14 5.2405 5.1396 2.3682 21 1 5.6667 5.7443 3.6558 22 1 6.4038 5.0645 1.4482 23 1 4.1778 5.9768 1.7558 24 6 2.7606 1.2229 2.3328 25 1 -0.3633 -1.0262 0.0539 26 1 -0.3634 0.5598 0.8618 27 1 -0.3633 0.4664 -0.9158 28 1 2.6390 -0.4381 -3.2653 29 1 1.1688 0.4217 -2.7481 30 1 2.7678 0.9909 -2.2120 31 1 4.2374 -0.5241 -1.1184 32 1 3.7045 -2.2321 -1.0799 33 1 3.6485 -2.1500 1.2076 34 1 4.1465 -0.4365 1.1677 35 1 0.8183 -1.3183 3.4331 36 1 0.8235 0.0443 5.4744 37 1 2.4754 3.2277 5.7932 38 1 1.6341 2.0180 6.6003 39 1 5.8637 2.5213 1.4664 40 1 3.2984 1.5448 1.4532 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380659161.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:48 Heat of formation + Delta-G solvation = 15.889497 kcal Electronic energy + Delta-G solvation = -20151.479880 eV Core-core repulsion = 17350.951413 eV Total energy + Delta-G solvation = -2800.528467 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.29601 -37.26712 -33.84303 -33.52436 -31.40838 -30.76706 -29.47854 -27.80589 -25.65040 -24.81651 -23.67166 -21.54134 -20.72966 -19.52209 -18.95938 -17.15617 -15.94656 -15.56324 -15.19058 -14.96723 -14.65141 -13.75196 -13.46804 -13.07833 -13.02580 -12.59877 -12.47656 -12.22918 -12.06410 -11.78169 -11.45215 -11.33899 -11.22788 -11.06777 -11.04764 -10.74459 -10.49328 -10.40008 -10.17060 -9.96750 -9.84616 -9.61109 -9.09601 -8.92110 -7.56867 -7.32866 -6.68532 -6.17591 -4.12410 2.85888 3.08351 3.09949 3.12046 3.26485 4.00435 4.68510 4.74341 5.04000 5.16946 5.25527 5.40287 5.68065 5.74905 5.81563 5.88702 5.92017 6.02099 6.11085 6.16406 6.31293 6.34300 6.39278 6.47230 6.61065 6.63427 6.67316 6.78710 6.81164 7.04357 7.20100 7.23472 7.38361 7.66026 7.67897 7.76541 7.95319 8.26837 8.39791 8.69553 8.81772 8.87519 9.11021 9.19933 10.33432 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.016035 B = 0.008493 C = 0.006314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.765946 B = 3295.972955 C = 4433.777308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.070 3.930 3 H 0.058 0.942 4 C -0.093 4.093 5 H 0.076 0.924 6 C -0.141 4.141 7 C -0.125 4.125 8 C 0.037 3.963 9 N -0.471 5.471 10 C 0.039 3.961 11 C -0.155 4.155 12 C -0.185 4.185 13 C 0.123 3.877 14 N -0.885 5.885 15 C 0.065 3.935 16 C -0.466 4.466 17 H 0.069 0.931 18 C 0.078 3.922 19 N -0.806 5.806 20 Si 0.898 3.102 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.267 1.267 24 C -0.156 4.156 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.391 0.609 38 H 0.377 0.623 39 H 0.276 0.724 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.464 -2.833 -4.756 6.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.037 4.037 3 H 0.076 0.924 4 C -0.112 4.112 5 H 0.094 0.906 6 C -0.199 4.199 7 C -0.163 4.163 8 C -0.090 4.090 9 N -0.193 5.193 10 C -0.056 4.056 11 C -0.176 4.176 12 C -0.209 4.209 13 C 0.021 3.979 14 N -0.426 5.426 15 C 0.060 3.940 16 C -0.498 4.498 17 H 0.087 0.913 18 C -0.137 4.137 19 N -0.434 5.434 20 Si 0.724 3.276 21 H -0.193 1.193 22 H -0.206 1.206 23 H -0.192 1.192 24 C -0.179 4.179 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.111 0.889 36 H 0.107 0.893 37 H 0.219 0.781 38 H 0.202 0.798 39 H 0.087 0.913 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.525 -3.394 -4.810 6.861 hybrid contribution 1.004 1.674 0.079 1.954 sum -2.521 -1.719 -4.731 5.629 Atomic orbital electron populations 1.21591 0.94678 1.01663 1.00804 1.22851 0.95382 0.96190 0.89294 0.92431 1.22083 0.96504 0.98222 0.94379 0.90563 1.21774 1.01440 0.99542 0.97119 1.22460 0.96837 1.00818 0.96173 1.22894 0.91131 1.01146 0.93827 1.62379 1.18223 1.37064 1.01590 1.18469 1.02070 0.93934 0.91091 1.19939 1.04856 1.00009 0.92766 1.19930 1.06125 0.96797 0.98021 1.18058 1.00419 0.91928 0.87467 1.41932 1.68091 1.21626 1.10921 1.17093 0.93083 0.94324 0.89493 1.19052 1.10157 0.99736 1.20823 0.91327 1.25672 0.95345 0.97737 0.94977 1.69824 1.20037 1.30809 1.22728 0.86535 0.78605 0.83505 0.78990 1.19332 1.20576 1.19214 1.21373 1.02431 0.95630 0.98439 0.92536 0.92500 0.93247 0.92983 0.92812 0.92622 0.91785 0.92012 0.91700 0.91627 0.88946 0.89302 0.78096 0.79779 0.91350 0.86350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 9.45 37.16 0.35 -1.78 16 2 C 0.07 1.28 2.24 -65.64 -0.15 1.13 16 3 H 0.06 1.19 6.55 -51.93 -0.34 0.85 16 4 C -0.09 -1.41 3.10 -88.76 -0.27 -1.68 16 5 H 0.08 1.10 8.05 -51.92 -0.42 0.68 16 6 C -0.14 -1.85 9.15 37.16 0.34 -1.51 16 7 C -0.12 -1.97 6.51 -25.38 -0.17 -2.14 16 8 C 0.04 0.72 6.49 -2.76 -0.02 0.70 16 9 N -0.47 -9.63 4.99 -159.58 -0.80 -10.43 16 10 C 0.04 0.91 4.70 -83.77 -0.39 0.52 16 11 C -0.15 -3.54 9.96 -39.14 -0.39 -3.93 16 12 C -0.18 -4.16 9.87 -39.46 -0.39 -4.55 16 13 C 0.12 2.92 6.79 -83.22 -0.56 2.35 16 14 N -0.88 -17.65 8.97 32.75 0.29 -17.36 16 15 C 0.07 1.71 5.57 -106.66 -0.59 1.11 16 16 C -0.47 -12.11 8.51 -37.91 -0.32 -12.43 16 17 H 0.07 1.69 6.65 -52.48 -0.35 1.34 16 18 C 0.08 1.95 5.16 -17.33 -0.09 1.86 16 19 N -0.81 -20.85 10.97 55.55 0.61 -20.25 16 20 Si 0.90 18.92 29.59 -169.99 -5.03 13.89 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 22 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 24 C -0.16 -3.98 6.50 -38.75 -0.25 -4.23 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.06 1.02 8.13 -51.93 -0.42 0.60 16 27 H 0.05 0.69 8.10 -51.93 -0.42 0.27 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.65 8.10 -51.93 -0.42 0.23 16 30 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 31 H 0.06 1.01 7.85 -51.93 -0.41 0.60 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.07 1.47 6.67 -51.93 -0.35 1.12 16 35 H 0.09 1.98 8.06 -52.49 -0.42 1.56 16 36 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 37 H 0.39 7.65 7.04 -40.82 -0.29 7.36 16 38 H 0.38 6.32 8.84 -40.82 -0.36 5.96 16 39 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 40 H 0.12 3.16 5.19 -52.49 -0.27 2.89 16 LS Contribution 316.11 15.07 4.76 4.76 Total: -1.00 -27.26 316.11 -9.21 -36.47 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: -6.14 Total: 17.50 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: -2.91 Total: -24.59 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: 0.11 Total: -48.03 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.26 -9.21 -36.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380659161.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.356 kcal (2) G-P(sol) polarization free energy of solvation -27.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds