Wall clock time and date at job start Mon Mar 30 2020 06:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.59649 * 2 1 4 4 C 1.54928 * 110.67123 * 236.99202 * 2 1 3 5 5 H 1.09009 * 110.72534 * 322.51125 * 4 2 1 6 6 C 1.53007 * 110.72580 * 85.79173 * 4 2 1 7 7 C 1.54599 * 102.92344 * 204.15381 * 4 2 1 8 8 C 1.53988 * 105.13744 * 21.95806 * 7 4 2 9 9 N 1.47898 * 107.22760 * 1.12526 * 8 7 4 10 10 C 1.39856 * 110.99983 * 214.25440 * 9 8 7 11 11 C 1.39595 * 119.83976 * 239.60098 * 10 9 8 12 12 C 1.38064 * 120.54968 * 179.76120 * 11 10 9 13 13 C 1.38732 * 120.21537 * 0.51478 * 12 11 10 14 14 N 1.38869 * 120.16084 * 179.76099 * 13 12 11 15 15 C 1.41566 * 119.67918 * 359.74177 * 13 12 11 16 16 C 1.41021 * 120.26868 * 180.02562 * 15 13 12 17 17 H 1.08005 * 120.00291 * 333.59405 * 16 15 13 18 18 C 1.39891 * 119.99653 * 153.59720 * 16 15 13 19 19 N 1.30899 * 120.00003 * 343.99651 * 18 16 15 20 20 Si 1.86800 * 119.99813 * 164.00457 * 18 16 15 21 21 H 1.48501 * 109.47266 * 59.99905 * 20 18 16 22 22 H 1.48499 * 109.46867 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47048 * 299.99356 * 20 18 16 24 24 C 1.38009 * 119.83744 * 59.87565 * 10 9 8 25 25 H 1.08999 * 109.46950 * 183.00530 * 1 2 3 26 26 H 1.08995 * 109.47388 * 303.00626 * 1 2 3 27 27 H 1.09001 * 109.46694 * 63.01028 * 1 2 3 28 28 H 1.08994 * 109.47089 * 174.95361 * 6 4 2 29 29 H 1.08995 * 109.46792 * 294.95799 * 6 4 2 30 30 H 1.08997 * 109.46393 * 54.95955 * 6 4 2 31 31 H 1.09000 * 110.30742 * 263.04109 * 7 4 2 32 32 H 1.09002 * 110.30987 * 140.87427 * 7 4 2 33 33 H 1.09000 * 109.91667 * 120.58398 * 8 7 4 34 34 H 1.09005 * 109.91316 * 241.67267 * 8 7 4 35 35 H 1.07998 * 119.73013 * 0.02562 * 11 10 9 36 36 H 1.07998 * 119.89171 * 180.27850 * 12 11 10 37 37 H 0.96997 * 119.99693 * 185.28220 * 14 13 12 38 38 H 0.96994 * 119.99954 * 5.29221 * 14 13 12 39 39 H 0.96998 * 119.99908 * 175.02174 * 19 18 16 40 40 H 1.08002 * 120.11440 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9134 1.0203 0.0000 4 6 2.0769 -0.7896 -1.2156 5 1 1.4562 -1.6622 -1.4197 6 6 2.1698 0.1110 -2.4490 7 6 3.4853 -1.2185 -0.7440 8 6 3.4278 -1.1660 0.7939 9 7 2.0559 -0.7585 1.1673 10 6 2.0642 0.0315 2.3213 11 6 1.3634 -0.3862 3.4540 12 6 1.3657 0.3798 4.6027 13 6 2.0581 1.5814 4.6392 14 7 2.0556 2.3533 5.7936 15 6 2.7677 2.0166 3.4941 16 6 3.4762 3.2356 3.5177 17 1 3.1678 4.0267 4.1852 18 6 4.5785 3.4203 2.6764 19 7 5.1462 2.3882 2.1054 20 14 5.2405 5.1396 2.3682 21 1 5.6667 5.7443 3.6558 22 1 6.4038 5.0645 1.4482 23 1 4.1778 5.9768 1.7558 24 6 2.7606 1.2229 2.3328 25 1 -0.3633 -1.0262 0.0539 26 1 -0.3634 0.5598 0.8618 27 1 -0.3633 0.4664 -0.9158 28 1 2.6390 -0.4381 -3.2653 29 1 1.1688 0.4217 -2.7481 30 1 2.7678 0.9909 -2.2120 31 1 4.2374 -0.5241 -1.1184 32 1 3.7045 -2.2321 -1.0799 33 1 3.6485 -2.1500 1.2076 34 1 4.1465 -0.4365 1.1677 35 1 0.8183 -1.3183 3.4331 36 1 0.8235 0.0443 5.4744 37 1 2.4754 3.2277 5.7932 38 1 1.6341 2.0180 6.6003 39 1 5.8637 2.5213 1.4664 40 1 3.2984 1.5448 1.4532 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380659161.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:47 Heat of formation + Delta-G solvation = 0.154596 kcal Electronic energy + Delta-G solvation = -20152.162197 eV Core-core repulsion = 17350.951413 eV Total energy + Delta-G solvation = -2801.210784 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.87802 -38.96415 -35.51699 -35.31054 -32.93672 -32.17119 -31.37316 -29.25140 -27.41891 -26.55091 -25.00170 -23.32003 -22.41050 -20.93965 -20.57367 -19.00082 -17.72328 -17.30682 -16.79631 -16.42019 -16.37611 -15.24118 -14.89981 -14.76821 -14.51953 -14.32577 -13.94162 -13.75585 -13.56752 -13.33060 -13.14762 -12.92139 -12.76432 -12.60237 -12.53385 -12.27006 -12.20037 -11.75998 -11.68380 -11.47434 -11.40923 -11.23808 -10.96875 -10.64027 -9.27834 -9.21100 -8.55911 -7.96479 -6.06431 1.05651 1.23456 1.36518 1.45529 1.52493 2.23269 2.81477 3.24058 3.61497 3.70138 3.75833 3.94954 4.11135 4.36126 4.53208 4.55081 4.63290 4.66668 4.75334 4.82634 4.86831 4.92677 4.99422 5.06663 5.15745 5.19697 5.21421 5.26614 5.32183 5.42263 5.46297 5.50928 5.55794 5.85467 5.96500 6.07536 6.13206 6.39050 6.53419 6.91735 6.94648 7.01348 7.32176 7.52992 8.46745 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.016035 B = 0.008493 C = 0.006314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.765946 B = 3295.972955 C = 4433.777308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.064 3.936 3 H 0.023 0.977 4 C -0.083 4.083 5 H 0.096 0.904 6 C -0.137 4.137 7 C -0.118 4.118 8 C 0.035 3.965 9 N -0.471 5.471 10 C 0.034 3.966 11 C -0.159 4.159 12 C -0.189 4.189 13 C 0.114 3.886 14 N -0.873 5.873 15 C 0.027 3.973 16 C -0.494 4.494 17 H 0.073 0.927 18 C 0.035 3.965 19 N -0.838 5.838 20 Si 0.968 3.032 21 H -0.260 1.260 22 H -0.276 1.276 23 H -0.266 1.266 24 C -0.169 4.169 25 H 0.068 0.932 26 H 0.032 0.968 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.036 0.964 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.024 0.976 35 H 0.109 0.891 36 H 0.118 0.882 37 H 0.393 0.607 38 H 0.394 0.606 39 H 0.278 0.722 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.291 -3.409 -5.536 7.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.043 4.043 3 H 0.041 0.959 4 C -0.102 4.102 5 H 0.114 0.886 6 C -0.194 4.194 7 C -0.156 4.156 8 C -0.092 4.092 9 N -0.192 5.192 10 C -0.061 4.061 11 C -0.179 4.179 12 C -0.213 4.213 13 C 0.011 3.989 14 N -0.415 5.415 15 C 0.022 3.978 16 C -0.525 4.525 17 H 0.091 0.909 18 C -0.177 4.177 19 N -0.466 5.466 20 Si 0.790 3.210 21 H -0.185 1.185 22 H -0.200 1.200 23 H -0.190 1.190 24 C -0.192 4.192 25 H 0.087 0.913 26 H 0.051 0.949 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.109 0.891 33 H 0.089 0.911 34 H 0.043 0.957 35 H 0.127 0.873 36 H 0.136 0.864 37 H 0.221 0.779 38 H 0.222 0.778 39 H 0.088 0.912 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.368 -3.971 -5.558 8.108 hybrid contribution 1.212 1.774 0.372 2.181 sum -3.156 -2.197 -5.185 6.456 Atomic orbital electron populations 1.21548 0.93109 1.02255 1.01083 1.22952 0.96598 0.94701 0.90029 0.95933 1.22092 0.95781 0.98654 0.93663 0.88619 1.21747 1.02279 0.98674 0.96724 1.22444 0.97429 1.02478 0.93247 1.22884 0.89727 0.99973 0.96587 1.62496 1.18603 1.36515 1.01578 1.18654 1.01450 0.93506 0.92514 1.20253 1.04456 1.00571 0.92670 1.20253 1.05833 0.96224 0.98981 1.18222 1.00041 0.92684 0.87950 1.41817 1.67786 1.21313 1.10590 1.17495 0.94455 0.95153 0.90698 1.19314 1.10952 1.00184 1.22092 0.90898 1.26479 0.95342 1.01434 0.94485 1.69919 1.20571 1.32771 1.23324 0.85467 0.77883 0.78558 0.79060 1.18462 1.20049 1.19048 1.21285 1.03230 0.96834 0.97818 0.91325 0.94890 0.90660 0.90625 0.91398 0.94450 0.92248 0.89134 0.91076 0.95724 0.87253 0.86359 0.77896 0.77757 0.91158 0.88617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.88 9.45 71.98 0.68 -3.20 16 2 C 0.06 2.34 2.24 45.20 0.10 2.44 16 3 H 0.02 0.98 6.55 -2.39 -0.02 0.97 16 4 C -0.08 -2.36 3.10 -9.59 -0.03 -2.39 16 5 H 0.10 2.41 8.05 -2.38 -0.02 2.39 16 6 C -0.14 -3.29 9.15 71.98 0.66 -2.63 16 7 C -0.12 -3.60 6.51 31.47 0.20 -3.40 16 8 C 0.04 1.39 6.49 86.44 0.56 1.96 16 9 N -0.47 -19.36 4.99 -658.78 -3.29 -22.65 16 10 C 0.03 1.63 4.70 38.13 0.18 1.81 16 11 C -0.16 -7.22 9.96 22.56 0.22 -7.00 16 12 C -0.19 -8.37 9.87 22.35 0.22 -8.15 16 13 C 0.11 5.44 6.79 38.97 0.26 5.71 16 14 N -0.87 -34.31 8.97 -50.31 -0.45 -34.76 16 15 C 0.03 1.47 5.57 -21.18 -0.12 1.36 16 16 C -0.49 -26.44 8.51 23.35 0.20 -26.25 16 17 H 0.07 3.68 6.65 -2.91 -0.02 3.66 16 18 C 0.03 1.78 5.16 85.23 0.44 2.22 16 19 N -0.84 -45.24 10.97 21.82 0.24 -45.00 16 20 Si 0.97 39.58 29.59 68.60 2.03 41.61 16 21 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 22 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 23 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 24 C -0.17 -9.03 6.50 22.81 0.15 -8.88 16 25 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.03 1.17 8.13 -2.39 -0.02 1.15 16 27 H 0.07 1.96 8.10 -2.39 -0.02 1.94 16 28 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.07 1.44 8.10 -2.39 -0.02 1.43 16 30 H 0.04 1.03 8.12 -2.39 -0.02 1.01 16 31 H 0.06 1.86 7.85 -2.39 -0.02 1.84 16 32 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 34 H 0.02 1.16 6.67 -2.38 -0.02 1.14 16 35 H 0.11 4.53 8.06 -2.91 -0.02 4.51 16 36 H 0.12 4.46 8.06 -2.91 -0.02 4.43 16 37 H 0.39 15.27 7.04 -92.71 -0.65 14.62 16 38 H 0.39 12.61 8.84 -92.71 -0.82 11.79 16 39 H 0.28 13.95 8.30 -92.71 -0.77 13.18 16 40 H 0.10 5.48 5.19 -2.91 -0.02 5.46 16 Total: -1.00 -60.93 316.11 1.84 -59.09 By element: Atomic # 1 Polarization: 48.55 SS G_CDS: -0.43 Total: 48.12 kcal Atomic # 6 Polarization: -50.14 SS G_CDS: 3.73 Total: -46.40 kcal Atomic # 7 Polarization: -98.91 SS G_CDS: -3.50 Total: -102.41 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 2.03 Total: 41.61 kcal Total: -60.93 1.84 -59.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380659161.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.243 kcal (2) G-P(sol) polarization free energy of solvation -60.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds