Wall clock time and date at job start Mon Mar 30 2020 06:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 110.45870 * 2 1 4 4 C 1.54373 * 110.41387 * 237.58134 * 2 1 3 5 5 H 1.08999 * 110.40909 * 336.31130 * 4 2 1 6 6 N 1.46901 * 110.32431 * 98.47331 * 4 2 1 7 7 C 1.54258 * 105.06311 * 217.37147 * 4 2 1 8 8 C 1.54377 * 105.06102 * 359.97438 * 7 4 2 9 9 N 1.48564 * 110.40749 * 122.40706 * 2 1 3 10 10 C 1.46903 * 111.00318 * 277.81854 * 9 2 1 11 11 H 1.08998 * 109.47018 * 310.75303 * 10 9 2 12 12 C 1.50699 * 109.47081 * 190.75328 * 10 9 2 13 13 H 1.07998 * 119.99691 * 300.12280 * 12 10 9 14 14 C 1.37879 * 119.99796 * 120.11947 * 12 10 9 15 15 N 1.31513 * 119.99542 * 174.51055 * 14 12 10 16 16 Si 1.86797 * 119.99911 * 354.50936 * 14 12 10 17 17 H 1.48507 * 109.47031 * 85.75305 * 16 14 12 18 18 H 1.48503 * 109.46972 * 205.74805 * 16 14 12 19 19 H 1.48492 * 109.47351 * 325.75284 * 16 14 12 20 20 C 1.50692 * 109.46827 * 70.75181 * 10 9 2 21 21 C 1.38237 * 120.00055 * 46.22459 * 20 10 9 22 22 C 1.38240 * 119.99944 * 179.76528 * 21 20 10 23 23 C 1.38234 * 119.99772 * 0.50241 * 22 21 20 24 24 C 1.38234 * 120.00075 * 359.75015 * 23 22 21 25 25 C 1.38232 * 120.00125 * 226.49500 * 20 10 9 26 26 H 1.08998 * 109.47386 * 189.48623 * 1 2 3 27 27 H 1.09004 * 109.47472 * 309.48825 * 1 2 3 28 28 H 1.08998 * 109.47203 * 69.48865 * 1 2 3 29 29 H 1.00901 * 111.00143 * 177.09686 * 6 4 2 30 30 H 1.00898 * 110.99865 * 301.04577 * 6 4 2 31 31 H 1.09001 * 110.32851 * 118.89677 * 7 4 2 32 32 H 1.09000 * 110.32447 * 241.00587 * 7 4 2 33 33 H 1.08999 * 110.41323 * 142.63209 * 8 7 4 34 34 H 1.09002 * 110.41538 * 264.95813 * 8 7 4 35 35 H 0.97006 * 119.99735 * 179.97438 * 15 14 12 36 36 H 1.08002 * 120.00371 * 359.97438 * 21 20 10 37 37 H 1.07998 * 120.00068 * 180.23082 * 22 21 20 38 38 H 1.08006 * 119.99504 * 179.72563 * 23 22 21 39 39 H 1.08002 * 119.99826 * 179.97438 * 24 23 22 40 40 H 1.07995 * 120.00186 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0684 -0.7756 -1.2213 5 1 1.3243 -1.4880 -1.5774 6 7 2.4366 0.1561 -2.2957 7 6 3.3177 -1.5189 -0.7052 8 6 3.4294 -1.1294 0.7844 9 7 2.0480 -0.7462 1.1755 10 6 2.0568 0.1015 2.3753 11 1 2.5327 1.0543 2.1434 12 6 2.8241 -0.5894 3.4729 13 1 2.4986 -1.5534 3.8350 14 6 3.9417 0.0093 4.0149 15 7 4.5482 -0.5405 5.0442 16 14 4.5942 1.6011 3.2871 17 1 3.8782 2.7525 3.8930 18 1 6.0471 1.7165 3.5717 19 1 4.3760 1.5999 1.8183 20 6 0.6404 0.3447 2.8287 21 6 -0.2513 -0.7088 2.9055 22 6 -1.5492 -0.4865 3.3262 23 6 -1.9583 0.7911 3.6600 24 6 -1.0681 1.8454 3.5781 25 6 0.2313 1.6222 3.1625 26 1 -0.3634 -1.0136 0.1694 27 1 -0.3634 0.6535 0.7931 28 1 -0.3633 0.3601 -0.9625 29 1 2.8341 -0.3367 -3.0813 30 1 1.6436 0.7110 -2.5806 31 1 3.1861 -2.5962 -0.8063 32 1 4.2039 -1.1936 -1.2502 33 1 3.7693 -1.9799 1.3754 34 1 4.1094 -0.2863 0.9070 35 1 5.3347 -0.1196 5.4253 36 1 0.0670 -1.7062 2.6402 37 1 -2.2448 -1.3101 3.3898 38 1 -2.9736 0.9654 3.9843 39 1 -1.3878 2.8436 3.8385 40 1 0.9267 2.4460 3.0987 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383394823.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:22 Heat of formation + Delta-G solvation = 33.981790 kcal Electronic energy + Delta-G solvation = -20504.768229 eV Core-core repulsion = 17705.024303 eV Total energy + Delta-G solvation = -2799.743927 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.34160 -37.89144 -34.43041 -32.36806 -31.38104 -30.55078 -30.10644 -28.53441 -26.04796 -24.22076 -22.86586 -21.89936 -20.60568 -19.58870 -19.21845 -17.03191 -16.25780 -15.61448 -15.22215 -14.85785 -14.60778 -14.23156 -13.77411 -13.51598 -13.25277 -12.98349 -12.77584 -12.67145 -12.09307 -11.97111 -11.59587 -11.32050 -11.25211 -11.04386 -10.90421 -10.49044 -10.41798 -10.36177 -10.10168 -9.97579 -9.80302 -9.42111 -8.71387 -8.54337 -8.19228 -7.76230 -7.43725 -6.20548 -4.19478 2.12125 2.17888 3.19523 3.27827 3.29682 4.29022 4.46231 4.63235 5.00379 5.07257 5.21559 5.27298 5.51306 5.54366 5.60516 5.72901 5.82242 5.95135 5.96117 6.01252 6.10794 6.24338 6.28325 6.31486 6.39135 6.51485 6.55602 6.64342 6.74116 6.77686 6.85858 6.93701 7.14511 7.18248 7.30338 7.40451 7.50414 7.55062 7.77920 7.94208 8.03178 8.51300 8.90296 9.41451 10.91644 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.012741 B = 0.011980 C = 0.007413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.046380 B = 2336.722389 C = 3776.449554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.058 3.942 3 H 0.049 0.951 4 C 0.089 3.911 5 H 0.040 0.960 6 N -0.845 5.845 7 C -0.123 4.123 8 C 0.058 3.942 9 N -0.495 5.495 10 C 0.201 3.799 11 H 0.019 0.981 12 C -0.493 4.493 13 H 0.083 0.917 14 C 0.079 3.921 15 N -0.886 5.886 16 Si 0.865 3.135 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.263 1.263 20 C -0.019 4.019 21 C -0.090 4.090 22 C -0.130 4.130 23 C -0.148 4.148 24 C -0.125 4.125 25 C -0.137 4.137 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.039 0.961 29 H 0.336 0.664 30 H 0.336 0.664 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.039 0.961 35 H 0.266 0.734 36 H 0.124 0.876 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.708 1.500 -10.450 13.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.051 4.051 3 H 0.067 0.933 4 C -0.023 4.023 5 H 0.058 0.942 6 N -0.375 5.375 7 C -0.161 4.161 8 C -0.070 4.070 9 N -0.220 5.220 10 C 0.095 3.905 11 H 0.036 0.964 12 C -0.531 4.531 13 H 0.101 0.899 14 C -0.125 4.125 15 N -0.523 5.523 16 Si 0.692 3.308 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.188 1.188 20 C -0.020 4.020 21 C -0.108 4.108 22 C -0.148 4.148 23 C -0.167 4.167 24 C -0.143 4.143 25 C -0.155 4.155 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.058 0.942 29 H 0.148 0.852 30 H 0.149 0.851 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.141 0.859 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.362 1.357 -9.626 12.194 hybrid contribution 0.276 1.187 -0.874 1.500 sum -7.086 2.545 -10.500 12.920 Atomic orbital electron populations 1.21909 0.94755 1.02445 1.00320 1.22639 0.95151 0.96311 0.91013 0.93297 1.22146 0.96026 0.92578 0.91500 0.94185 1.58839 1.36757 1.28379 1.13486 1.22442 0.97086 0.99188 0.97390 1.22710 0.90980 1.00778 0.92512 1.65658 1.17658 1.37312 1.01389 1.18955 0.89729 0.92349 0.89490 0.96369 1.20755 1.09377 1.06422 1.16560 0.89913 1.25046 0.96310 0.96759 0.94368 1.69877 1.20517 1.39822 1.22085 0.87089 0.78592 0.84766 0.80338 1.20011 1.21184 1.18822 1.20182 0.95576 0.91946 0.94346 1.20938 0.92189 0.99503 0.98184 1.21058 0.96550 0.96365 1.00833 1.20845 0.98889 0.93366 1.03566 1.20896 0.93975 0.98249 1.01167 1.20965 0.95653 0.96887 1.02024 0.92058 0.91826 0.94229 0.85154 0.85131 0.91779 0.91450 0.89733 0.94272 0.92359 0.85850 0.87294 0.87497 0.87371 0.87497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 7.84 37.16 0.29 -1.89 16 2 C 0.06 1.04 2.53 -66.07 -0.17 0.87 16 3 H 0.05 0.97 7.72 -51.93 -0.40 0.57 16 4 C 0.09 1.35 3.74 -66.33 -0.25 1.10 16 5 H 0.04 0.58 7.86 -51.93 -0.41 0.17 16 6 N -0.84 -11.00 9.14 -3.50 -0.03 -11.03 16 7 C -0.12 -1.98 6.78 -25.35 -0.17 -2.15 16 8 C 0.06 1.18 5.54 -2.16 -0.01 1.17 16 9 N -0.50 -10.16 4.45 -216.98 -0.97 -11.12 16 10 C 0.20 4.63 1.47 -70.02 -0.10 4.53 16 11 H 0.02 0.45 4.20 -51.93 -0.22 0.23 16 12 C -0.49 -13.23 7.76 -34.44 -0.27 -13.50 16 13 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 14 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 15 N -0.89 -26.15 13.96 55.43 0.77 -25.38 16 16 Si 0.86 21.14 26.30 -169.99 -4.47 16.67 16 17 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.26 -6.29 5.82 56.52 0.33 -5.96 16 20 C -0.02 -0.41 2.73 -104.63 -0.29 -0.70 16 21 C -0.09 -1.75 7.42 -39.58 -0.29 -2.05 16 22 C -0.13 -2.21 10.05 -39.58 -0.40 -2.61 16 23 C -0.15 -2.41 10.05 -39.58 -0.40 -2.80 16 24 C -0.12 -2.14 10.05 -39.58 -0.40 -2.54 16 25 C -0.14 -2.71 9.25 -39.59 -0.37 -3.08 16 26 H 0.06 0.98 7.89 -51.93 -0.41 0.57 16 27 H 0.06 1.10 5.47 -51.93 -0.28 0.82 16 28 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.34 3.62 9.06 -39.29 -0.36 3.26 16 30 H 0.34 3.87 9.04 -39.29 -0.36 3.51 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.07 1.04 7.95 -51.93 -0.41 0.62 16 33 H 0.08 1.81 7.91 -51.93 -0.41 1.40 16 34 H 0.04 0.87 6.32 -51.93 -0.33 0.54 16 35 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 36 H 0.12 2.48 7.91 -52.49 -0.42 2.06 16 37 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 38 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 39 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 40 H 0.11 2.10 7.99 -52.49 -0.42 1.68 16 LS Contribution 310.69 15.07 4.68 4.68 Total: -1.00 -28.88 310.69 -9.09 -37.97 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -6.16 Total: 9.75 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: -2.91 Total: -21.54 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: -0.22 Total: -47.54 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.47 Total: 16.67 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.88 -9.09 -37.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383394823.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.955 kcal (2) G-P(sol) polarization free energy of solvation -28.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds