Wall clock time and date at job start Mon Mar 30 2020 06:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 110.45870 * 2 1 4 4 C 1.54373 * 110.41387 * 237.58134 * 2 1 3 5 5 H 1.08999 * 110.40909 * 336.31130 * 4 2 1 6 6 N 1.46901 * 110.32431 * 98.47331 * 4 2 1 7 7 C 1.54258 * 105.06311 * 217.37147 * 4 2 1 8 8 C 1.54377 * 105.06102 * 359.97438 * 7 4 2 9 9 N 1.48564 * 110.40749 * 122.40706 * 2 1 3 10 10 C 1.46903 * 111.00318 * 277.81854 * 9 2 1 11 11 H 1.08998 * 109.47018 * 310.75303 * 10 9 2 12 12 C 1.50699 * 109.47081 * 190.75328 * 10 9 2 13 13 H 1.07998 * 119.99691 * 300.12280 * 12 10 9 14 14 C 1.37879 * 119.99796 * 120.11947 * 12 10 9 15 15 N 1.31513 * 119.99542 * 174.51055 * 14 12 10 16 16 Si 1.86797 * 119.99911 * 354.50936 * 14 12 10 17 17 H 1.48507 * 109.47031 * 85.75305 * 16 14 12 18 18 H 1.48503 * 109.46972 * 205.74805 * 16 14 12 19 19 H 1.48492 * 109.47351 * 325.75284 * 16 14 12 20 20 C 1.50692 * 109.46827 * 70.75181 * 10 9 2 21 21 C 1.38237 * 120.00055 * 46.22459 * 20 10 9 22 22 C 1.38240 * 119.99944 * 179.76528 * 21 20 10 23 23 C 1.38234 * 119.99772 * 0.50241 * 22 21 20 24 24 C 1.38234 * 120.00075 * 359.75015 * 23 22 21 25 25 C 1.38232 * 120.00125 * 226.49500 * 20 10 9 26 26 H 1.08998 * 109.47386 * 189.48623 * 1 2 3 27 27 H 1.09004 * 109.47472 * 309.48825 * 1 2 3 28 28 H 1.08998 * 109.47203 * 69.48865 * 1 2 3 29 29 H 1.00901 * 111.00143 * 177.09686 * 6 4 2 30 30 H 1.00898 * 110.99865 * 301.04577 * 6 4 2 31 31 H 1.09001 * 110.32851 * 118.89677 * 7 4 2 32 32 H 1.09000 * 110.32447 * 241.00587 * 7 4 2 33 33 H 1.08999 * 110.41323 * 142.63209 * 8 7 4 34 34 H 1.09002 * 110.41538 * 264.95813 * 8 7 4 35 35 H 0.97006 * 119.99735 * 179.97438 * 15 14 12 36 36 H 1.08002 * 120.00371 * 359.97438 * 21 20 10 37 37 H 1.07998 * 120.00068 * 180.23082 * 22 21 20 38 38 H 1.08006 * 119.99504 * 179.72563 * 23 22 21 39 39 H 1.08002 * 119.99826 * 179.97438 * 24 23 22 40 40 H 1.07995 * 120.00186 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0684 -0.7756 -1.2213 5 1 1.3243 -1.4880 -1.5774 6 7 2.4366 0.1561 -2.2957 7 6 3.3177 -1.5189 -0.7052 8 6 3.4294 -1.1294 0.7844 9 7 2.0480 -0.7462 1.1755 10 6 2.0568 0.1015 2.3753 11 1 2.5327 1.0543 2.1434 12 6 2.8241 -0.5894 3.4729 13 1 2.4986 -1.5534 3.8350 14 6 3.9417 0.0093 4.0149 15 7 4.5482 -0.5405 5.0442 16 14 4.5942 1.6011 3.2871 17 1 3.8782 2.7525 3.8930 18 1 6.0471 1.7165 3.5717 19 1 4.3760 1.5999 1.8183 20 6 0.6404 0.3447 2.8287 21 6 -0.2513 -0.7088 2.9055 22 6 -1.5492 -0.4865 3.3262 23 6 -1.9583 0.7911 3.6600 24 6 -1.0681 1.8454 3.5781 25 6 0.2313 1.6222 3.1625 26 1 -0.3634 -1.0136 0.1694 27 1 -0.3634 0.6535 0.7931 28 1 -0.3633 0.3601 -0.9625 29 1 2.8341 -0.3367 -3.0813 30 1 1.6436 0.7110 -2.5806 31 1 3.1861 -2.5962 -0.8063 32 1 4.2039 -1.1936 -1.2502 33 1 3.7693 -1.9799 1.3754 34 1 4.1094 -0.2863 0.9070 35 1 5.3347 -0.1196 5.4253 36 1 0.0670 -1.7062 2.6402 37 1 -2.2448 -1.3101 3.3898 38 1 -2.9736 0.9654 3.9843 39 1 -1.3878 2.8436 3.8385 40 1 0.9267 2.4460 3.0987 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383394823.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:21 Heat of formation + Delta-G solvation = 13.684438 kcal Electronic energy + Delta-G solvation = -20505.648388 eV Core-core repulsion = 17705.024303 eV Total energy + Delta-G solvation = -2800.624086 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.85668 -39.29813 -36.00633 -34.24549 -32.83121 -32.00131 -31.52722 -29.99146 -27.85352 -25.60379 -24.54516 -23.34343 -22.07215 -21.16149 -20.69060 -19.06863 -17.68548 -17.00173 -16.71106 -16.29666 -16.07696 -15.84245 -15.24594 -15.06701 -14.75417 -14.69514 -14.39211 -14.07151 -13.72358 -13.40760 -13.07899 -12.95525 -12.73340 -12.64647 -12.54365 -12.03192 -11.96502 -11.81960 -11.78797 -11.57221 -11.45917 -11.23646 -10.83518 -9.61946 -9.60642 -9.26066 -9.13499 -8.37378 -6.38369 0.68074 0.74679 1.20734 1.23983 1.31020 2.21816 2.86484 3.19286 3.30885 3.68807 3.80947 3.86521 4.16165 4.22097 4.29428 4.36159 4.39808 4.45936 4.57075 4.61916 4.69839 4.79395 4.91797 4.93611 4.95984 5.05685 5.12937 5.18741 5.25275 5.32819 5.35983 5.41853 5.47685 5.75499 5.79741 6.00563 6.08005 6.15578 6.32743 6.37959 6.59127 6.68037 6.69585 7.25838 8.79224 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.012741 B = 0.011980 C = 0.007413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.046380 B = 2336.722389 C = 3776.449554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.058 3.942 3 H 0.027 0.973 4 C 0.100 3.900 5 H 0.058 0.942 6 N -0.849 5.849 7 C -0.114 4.114 8 C 0.053 3.947 9 N -0.498 5.498 10 C 0.209 3.791 11 H 0.002 0.998 12 C -0.485 4.485 13 H 0.039 0.961 14 C 0.029 3.971 15 N -0.935 5.935 16 Si 0.921 3.079 17 H -0.267 1.267 18 H -0.282 1.282 19 H -0.259 1.259 20 C -0.045 4.045 21 C -0.102 4.102 22 C -0.126 4.126 23 C -0.137 4.137 24 C -0.121 4.121 25 C -0.157 4.157 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.068 0.932 29 H 0.353 0.647 30 H 0.348 0.652 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.013 0.987 35 H 0.267 0.733 36 H 0.107 0.893 37 H 0.139 0.861 38 H 0.147 0.853 39 H 0.139 0.861 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.248 2.547 -12.369 16.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.051 4.051 3 H 0.045 0.955 4 C -0.012 4.012 5 H 0.076 0.924 6 N -0.382 5.382 7 C -0.152 4.152 8 C -0.075 4.075 9 N -0.223 5.223 10 C 0.102 3.898 11 H 0.020 0.980 12 C -0.524 4.524 13 H 0.058 0.942 14 C -0.170 4.170 15 N -0.575 5.575 16 Si 0.747 3.253 17 H -0.192 1.192 18 H -0.208 1.208 19 H -0.184 1.184 20 C -0.046 4.046 21 C -0.121 4.121 22 C -0.144 4.144 23 C -0.155 4.155 24 C -0.139 4.139 25 C -0.175 4.175 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.167 0.833 30 H 0.162 0.838 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.031 0.969 35 H 0.076 0.924 36 H 0.125 0.875 37 H 0.157 0.843 38 H 0.165 0.835 39 H 0.157 0.843 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.919 2.407 -11.578 15.434 hybrid contribution 0.935 0.809 -0.281 1.268 sum -8.984 3.216 -11.859 15.221 Atomic orbital electron populations 1.21807 0.93029 1.02167 1.01411 1.22705 0.96477 0.95075 0.90868 0.95479 1.21968 0.95516 0.92627 0.91095 0.92393 1.58715 1.37497 1.28231 1.13769 1.22394 0.98335 1.00450 0.94041 1.22687 0.90514 0.98839 0.95470 1.65540 1.17608 1.37210 1.01943 1.18732 0.90741 0.91108 0.89221 0.98002 1.20831 1.09553 1.04821 1.17153 0.94226 1.25691 0.96708 0.99848 0.94735 1.70004 1.21572 1.41823 1.24077 0.86170 0.78024 0.81328 0.79777 1.19200 1.20826 1.18398 1.20028 0.94804 0.93334 0.96412 1.20873 0.93479 0.98311 0.99428 1.21388 0.95634 0.98023 0.99319 1.21308 1.00435 0.92363 1.01399 1.21250 0.92709 1.00240 0.99698 1.21080 0.97197 0.96114 1.03142 0.92177 0.93244 0.91312 0.83304 0.83811 0.90114 0.90394 0.92227 0.96863 0.92353 0.87455 0.84328 0.83500 0.84288 0.88230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.80 7.84 71.98 0.56 -3.24 16 2 C 0.06 2.01 2.53 45.06 0.11 2.12 16 3 H 0.03 1.07 7.72 -2.39 -0.02 1.05 16 4 C 0.10 2.80 3.74 45.81 0.17 2.98 16 5 H 0.06 1.47 7.86 -2.39 -0.02 1.45 16 6 N -0.85 -19.67 9.14 -164.98 -1.51 -21.18 16 7 C -0.11 -3.54 6.78 31.49 0.21 -3.33 16 8 C 0.05 2.23 5.54 86.44 0.48 2.71 16 9 N -0.50 -20.93 4.45 -840.39 -3.74 -24.67 16 10 C 0.21 9.98 1.47 43.42 0.06 10.05 16 11 H 0.00 0.12 4.20 -2.39 -0.01 0.11 16 12 C -0.48 -27.57 7.76 25.60 0.20 -27.37 16 13 H 0.04 2.54 8.06 -2.91 -0.02 2.51 16 14 C 0.03 1.71 5.47 84.66 0.46 2.17 16 15 N -0.94 -58.03 13.96 21.45 0.30 -57.73 16 16 Si 0.92 45.42 26.30 68.60 1.80 47.22 16 17 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 18 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 19 H -0.26 -12.46 5.82 99.48 0.58 -11.88 16 20 C -0.04 -1.92 2.73 -19.87 -0.05 -1.97 16 21 C -0.10 -3.98 7.42 22.27 0.17 -3.81 16 22 C -0.13 -3.94 10.05 22.27 0.22 -3.71 16 23 C -0.14 -3.89 10.05 22.27 0.22 -3.67 16 24 C -0.12 -3.80 10.05 22.27 0.22 -3.57 16 25 C -0.16 -6.12 9.25 22.27 0.21 -5.91 16 26 H 0.06 1.81 7.89 -2.39 -0.02 1.79 16 27 H 0.05 1.63 5.47 -2.39 -0.01 1.62 16 28 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.35 6.39 9.06 -89.69 -0.81 5.58 16 30 H 0.35 6.86 9.04 -89.70 -0.81 6.05 16 31 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.08 2.27 7.95 -2.39 -0.02 2.25 16 33 H 0.06 2.72 7.91 -2.39 -0.02 2.71 16 34 H 0.01 0.61 6.32 -2.39 -0.02 0.59 16 35 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 36 H 0.11 4.42 7.91 -2.91 -0.02 4.40 16 37 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 38 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 39 H 0.14 3.47 8.06 -2.91 -0.02 3.44 16 40 H 0.10 3.93 7.99 -2.91 -0.02 3.90 16 Total: -1.00 -66.48 310.69 -0.60 -67.08 By element: Atomic # 1 Polarization: 26.54 SS G_CDS: -0.71 Total: 25.83 kcal Atomic # 6 Polarization: -39.81 SS G_CDS: 3.25 Total: -36.56 kcal Atomic # 7 Polarization: -98.63 SS G_CDS: -4.95 Total: -103.58 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.80 Total: 47.22 kcal Total: -66.48 -0.60 -67.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383394823.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.767 kcal (2) G-P(sol) polarization free energy of solvation -66.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds