Wall clock time and date at job start Mon Mar 30 2020 06:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.90474 * 2 1 4 4 C 1.53991 * 110.08276 * 238.79328 * 2 1 3 5 5 H 1.09002 * 110.30720 * 120.41439 * 4 2 1 6 6 N 1.46895 * 110.31080 * 358.24721 * 4 2 1 7 7 C 1.54598 * 105.14038 * 239.32760 * 4 2 1 8 8 C 1.54940 * 102.91976 * 338.04533 * 7 4 2 9 9 N 1.47903 * 109.91814 * 121.10160 * 2 1 3 10 10 C 1.46894 * 111.00254 * 265.40011 * 9 2 1 11 11 H 1.08998 * 109.46790 * 312.39465 * 10 9 2 12 12 C 1.50706 * 109.47257 * 192.39636 * 10 9 2 13 13 H 1.07995 * 119.99869 * 305.10192 * 12 10 9 14 14 C 1.37878 * 119.99893 * 125.09952 * 12 10 9 15 15 N 1.31516 * 120.00216 * 354.88015 * 14 12 10 16 16 Si 1.86796 * 119.99863 * 174.88235 * 14 12 10 17 17 H 1.48498 * 109.47339 * 89.99712 * 16 14 12 18 18 H 1.48501 * 109.47188 * 210.00210 * 16 14 12 19 19 H 1.48508 * 109.47017 * 330.00004 * 16 14 12 20 20 C 1.50701 * 109.47487 * 72.39417 * 10 9 2 21 21 C 1.38231 * 119.99697 * 47.07528 * 20 10 9 22 22 C 1.38237 * 119.99884 * 179.81242 * 21 20 10 23 23 C 1.38240 * 119.99835 * 0.39171 * 22 21 20 24 24 C 1.38235 * 119.99970 * 359.86310 * 23 22 21 25 25 C 1.38233 * 120.00041 * 359.95274 * 24 23 22 26 26 H 1.09002 * 109.47461 * 299.30040 * 1 2 3 27 27 H 1.08999 * 109.47178 * 59.29792 * 1 2 3 28 28 H 1.09003 * 109.47011 * 179.29754 * 1 2 3 29 29 H 1.00897 * 111.00122 * 179.97438 * 6 4 2 30 30 H 1.00903 * 110.99911 * 303.95667 * 6 4 2 31 31 H 1.09000 * 110.72495 * 219.68536 * 7 4 2 32 32 H 1.09007 * 110.87371 * 96.47151 * 7 4 2 33 33 H 1.08992 * 110.66810 * 278.97303 * 8 7 4 34 34 H 1.09002 * 110.80669 * 155.91574 * 8 7 4 35 35 H 0.96997 * 120.00305 * 180.02562 * 15 14 12 36 36 H 1.08001 * 120.00086 * 359.97438 * 21 20 10 37 37 H 1.08002 * 120.00196 * 180.23180 * 22 21 20 38 38 H 1.08002 * 119.99728 * 179.83624 * 23 22 21 39 39 H 1.07997 * 119.99535 * 179.97438 * 24 23 22 40 40 H 1.07997 * 119.99870 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9011 1.0249 0.0000 4 6 2.0587 -0.7494 -1.2370 5 1 2.6747 -0.0873 -1.8457 6 7 0.9406 -1.2785 -2.0292 7 6 2.9124 -1.9082 -0.6728 8 6 3.2708 -1.4131 0.7510 9 7 2.0338 -0.7183 1.1907 10 6 2.3166 0.2158 2.2885 11 1 2.8961 1.0574 1.9092 12 6 3.1030 -0.4929 3.3612 13 1 2.7216 -1.4043 3.7972 14 6 4.3094 0.0223 3.7857 15 7 4.8225 1.0746 3.1863 16 14 5.2150 -0.7742 5.2121 17 1 6.1285 -1.8241 4.6940 18 1 6.0039 0.2558 5.9346 19 1 4.2326 -1.3875 6.1416 20 6 1.0191 0.7192 2.8666 21 6 0.0041 -0.1705 3.1649 22 6 -1.1846 0.2908 3.6988 23 6 -1.3613 1.6428 3.9269 24 6 -0.3482 2.5330 3.6237 25 6 0.8419 2.0713 3.0933 26 1 -0.3634 0.5029 0.8962 27 1 -0.3633 0.5247 -0.8836 28 1 -0.3633 -1.0276 -0.0126 29 1 1.2756 -1.7716 -2.8432 30 1 0.3469 -1.8696 -1.4668 31 1 3.8131 -2.0501 -1.2700 32 1 2.3330 -2.8304 -0.6260 33 1 4.1105 -0.7191 0.7169 34 1 3.4943 -2.2535 1.4083 35 1 5.6714 1.4368 3.4847 36 1 0.1408 -1.2263 2.9832 37 1 -1.9763 -0.4047 3.9353 38 1 -2.2911 2.0034 4.3415 39 1 -0.4865 3.5892 3.8015 40 1 1.6335 2.7668 2.8569 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383394824.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:25 Heat of formation + Delta-G solvation = 33.198034 kcal Electronic energy + Delta-G solvation = -20424.478004 eV Core-core repulsion = 17624.700092 eV Total energy + Delta-G solvation = -2799.777913 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.16793 -37.83970 -34.38060 -32.26461 -31.18101 -30.15565 -29.91036 -28.05600 -25.65449 -24.51136 -22.96120 -21.68881 -20.46306 -19.92674 -18.56146 -16.80719 -16.19026 -15.81100 -15.02539 -14.55505 -14.41843 -14.06530 -13.61913 -13.49522 -12.90479 -12.62011 -12.53242 -12.19351 -11.98685 -11.81616 -11.59773 -11.13542 -11.06590 -11.02839 -10.95891 -10.51742 -10.30611 -10.15230 -10.13976 -10.03370 -9.61722 -9.28786 -8.66698 -8.34041 -8.04724 -7.65367 -7.23422 -6.17025 -4.20810 2.27367 2.32076 3.22593 3.30120 3.34945 4.30460 4.66741 4.86338 5.03917 5.20510 5.32284 5.38243 5.63991 5.65419 5.75535 5.85397 5.91663 6.10800 6.16873 6.22117 6.25686 6.36466 6.43356 6.49948 6.64587 6.69397 6.81291 6.86326 6.95356 6.99965 7.02730 7.28582 7.30782 7.39672 7.47209 7.69691 7.71507 7.76059 7.76493 8.00199 8.23317 8.51951 8.93699 9.43285 10.88672 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.013323 B = 0.010524 C = 0.006646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.177996 B = 2659.995978 C = 4211.959231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.065 3.935 3 H 0.042 0.958 4 C 0.086 3.914 5 H 0.075 0.925 6 N -0.839 5.839 7 C -0.163 4.163 8 C 0.069 3.931 9 N -0.510 5.510 10 C 0.217 3.783 11 H 0.055 0.945 12 C -0.496 4.496 13 H 0.061 0.939 14 C 0.068 3.932 15 N -0.889 5.889 16 Si 0.895 3.105 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.272 1.272 20 C -0.018 4.018 21 C -0.095 4.095 22 C -0.135 4.135 23 C -0.152 4.152 24 C -0.129 4.129 25 C -0.127 4.127 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.048 0.952 29 H 0.330 0.670 30 H 0.343 0.657 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.047 0.953 34 H 0.074 0.926 35 H 0.264 0.736 36 H 0.119 0.881 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.485 -2.270 -5.323 8.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.045 4.045 3 H 0.060 0.940 4 C -0.027 4.027 5 H 0.093 0.907 6 N -0.368 5.368 7 C -0.203 4.203 8 C -0.059 4.059 9 N -0.236 5.236 10 C 0.111 3.889 11 H 0.072 0.928 12 C -0.535 4.535 13 H 0.079 0.921 14 C -0.135 4.135 15 N -0.526 5.526 16 Si 0.722 3.278 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.196 1.196 20 C -0.019 4.019 21 C -0.114 4.114 22 C -0.153 4.153 23 C -0.170 4.170 24 C -0.147 4.147 25 C -0.146 4.146 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.141 0.859 30 H 0.158 0.842 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.137 0.863 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.927 -1.729 -5.207 8.837 hybrid contribution 1.690 -0.625 0.877 2.004 sum -5.237 -2.354 -4.331 7.192 Atomic orbital electron populations 1.21593 0.94446 1.00957 1.00667 1.22352 0.96290 0.95870 0.89942 0.93959 1.22297 0.90687 0.95493 0.94190 0.90680 1.59054 1.21383 1.45043 1.11314 1.23391 0.99718 0.98552 0.98638 1.22649 0.92697 0.98507 0.92087 1.64951 1.26386 1.27633 1.04601 1.18754 0.88459 0.92469 0.89239 0.92757 1.20909 1.03294 1.09430 1.19824 0.92090 1.25003 0.97103 0.94916 0.96498 1.69886 1.19166 1.23120 1.40453 0.86541 0.79683 0.79028 0.82530 1.20547 1.21126 1.19622 1.20423 0.95245 0.91938 0.94325 1.20927 0.92475 1.00000 0.97962 1.21025 0.97855 0.95207 1.01209 1.20808 0.98684 0.93780 1.03752 1.20926 0.94322 0.98549 1.00873 1.21054 0.96711 0.95928 1.00889 0.92633 0.93142 0.93304 0.85872 0.84244 0.92353 0.91879 0.93510 0.90784 0.92608 0.86334 0.87633 0.87770 0.87605 0.86989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.04 8.00 37.16 0.30 -1.74 16 2 C 0.06 1.21 2.88 -66.65 -0.19 1.01 16 3 H 0.04 0.88 7.53 -51.93 -0.39 0.49 16 4 C 0.09 1.36 4.11 -66.36 -0.27 1.08 16 5 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 6 N -0.84 -11.16 8.14 -3.52 -0.03 -11.19 16 7 C -0.16 -2.59 6.76 -24.87 -0.17 -2.76 16 8 C 0.07 1.39 5.51 -1.90 -0.01 1.38 16 9 N -0.51 -10.55 4.28 -217.44 -0.93 -11.48 16 10 C 0.22 5.13 1.83 -70.02 -0.13 5.00 16 11 H 0.05 1.46 6.31 -51.93 -0.33 1.14 16 12 C -0.50 -12.85 7.03 -34.44 -0.24 -13.09 16 13 H 0.06 1.62 7.82 -52.49 -0.41 1.21 16 14 C 0.07 1.80 5.45 -17.82 -0.10 1.71 16 15 N -0.89 -24.34 12.62 55.43 0.70 -23.65 16 16 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 17 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 20 C -0.02 -0.40 3.25 -104.62 -0.34 -0.74 16 21 C -0.10 -1.92 7.54 -39.58 -0.30 -2.22 16 22 C -0.13 -2.40 10.05 -39.58 -0.40 -2.80 16 23 C -0.15 -2.61 10.05 -39.58 -0.40 -3.01 16 24 C -0.13 -2.35 10.05 -39.58 -0.40 -2.75 16 25 C -0.13 -2.68 9.67 -39.58 -0.38 -3.06 16 26 H 0.05 1.04 5.26 -51.93 -0.27 0.76 16 27 H 0.05 0.82 7.94 -51.93 -0.41 0.41 16 28 H 0.05 0.79 6.67 -51.93 -0.35 0.45 16 29 H 0.33 3.69 9.08 -39.29 -0.36 3.34 16 30 H 0.34 4.51 7.13 -39.29 -0.28 4.23 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.95 8.02 -51.93 -0.42 0.53 16 33 H 0.05 1.06 8.02 -51.93 -0.42 0.65 16 34 H 0.07 1.56 7.87 -51.93 -0.41 1.15 16 35 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 36 H 0.12 2.43 7.94 -52.49 -0.42 2.01 16 37 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.10 1.50 8.06 -52.49 -0.42 1.07 16 39 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 40 H 0.11 2.42 7.99 -52.49 -0.42 2.00 16 LS Contribution 314.40 15.07 4.74 4.74 Total: -1.00 -26.61 314.40 -9.70 -36.30 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -6.12 Total: 11.53 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: -3.03 Total: -21.99 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: -0.26 Total: -46.31 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -26.61 -9.70 -36.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383394824.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.502 kcal (2) G-P(sol) polarization free energy of solvation -26.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds