Wall clock time and date at job start Mon Mar 30 2020 06:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.90474 * 2 1 4 4 C 1.53991 * 110.08276 * 238.79328 * 2 1 3 5 5 H 1.09002 * 110.30720 * 120.41439 * 4 2 1 6 6 N 1.46895 * 110.31080 * 358.24721 * 4 2 1 7 7 C 1.54598 * 105.14038 * 239.32760 * 4 2 1 8 8 C 1.54940 * 102.91976 * 338.04533 * 7 4 2 9 9 N 1.47903 * 109.91814 * 121.10160 * 2 1 3 10 10 C 1.46894 * 111.00254 * 265.40011 * 9 2 1 11 11 H 1.08998 * 109.46790 * 312.39465 * 10 9 2 12 12 C 1.50706 * 109.47257 * 192.39636 * 10 9 2 13 13 H 1.07995 * 119.99869 * 305.10192 * 12 10 9 14 14 C 1.37878 * 119.99893 * 125.09952 * 12 10 9 15 15 N 1.31516 * 120.00216 * 354.88015 * 14 12 10 16 16 Si 1.86796 * 119.99863 * 174.88235 * 14 12 10 17 17 H 1.48498 * 109.47339 * 89.99712 * 16 14 12 18 18 H 1.48501 * 109.47188 * 210.00210 * 16 14 12 19 19 H 1.48508 * 109.47017 * 330.00004 * 16 14 12 20 20 C 1.50701 * 109.47487 * 72.39417 * 10 9 2 21 21 C 1.38231 * 119.99697 * 47.07528 * 20 10 9 22 22 C 1.38237 * 119.99884 * 179.81242 * 21 20 10 23 23 C 1.38240 * 119.99835 * 0.39171 * 22 21 20 24 24 C 1.38235 * 119.99970 * 359.86310 * 23 22 21 25 25 C 1.38233 * 120.00041 * 359.95274 * 24 23 22 26 26 H 1.09002 * 109.47461 * 299.30040 * 1 2 3 27 27 H 1.08999 * 109.47178 * 59.29792 * 1 2 3 28 28 H 1.09003 * 109.47011 * 179.29754 * 1 2 3 29 29 H 1.00897 * 111.00122 * 179.97438 * 6 4 2 30 30 H 1.00903 * 110.99911 * 303.95667 * 6 4 2 31 31 H 1.09000 * 110.72495 * 219.68536 * 7 4 2 32 32 H 1.09007 * 110.87371 * 96.47151 * 7 4 2 33 33 H 1.08992 * 110.66810 * 278.97303 * 8 7 4 34 34 H 1.09002 * 110.80669 * 155.91574 * 8 7 4 35 35 H 0.96997 * 120.00305 * 180.02562 * 15 14 12 36 36 H 1.08001 * 120.00086 * 359.97438 * 21 20 10 37 37 H 1.08002 * 120.00196 * 180.23180 * 22 21 20 38 38 H 1.08002 * 119.99728 * 179.83624 * 23 22 21 39 39 H 1.07997 * 119.99535 * 179.97438 * 24 23 22 40 40 H 1.07997 * 119.99870 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9011 1.0249 0.0000 4 6 2.0587 -0.7494 -1.2370 5 1 2.6747 -0.0873 -1.8457 6 7 0.9406 -1.2785 -2.0292 7 6 2.9124 -1.9082 -0.6728 8 6 3.2708 -1.4131 0.7510 9 7 2.0338 -0.7183 1.1907 10 6 2.3166 0.2158 2.2885 11 1 2.8961 1.0574 1.9092 12 6 3.1030 -0.4929 3.3612 13 1 2.7216 -1.4043 3.7972 14 6 4.3094 0.0223 3.7857 15 7 4.8225 1.0746 3.1863 16 14 5.2150 -0.7742 5.2121 17 1 6.1285 -1.8241 4.6940 18 1 6.0039 0.2558 5.9346 19 1 4.2326 -1.3875 6.1416 20 6 1.0191 0.7192 2.8666 21 6 0.0041 -0.1705 3.1649 22 6 -1.1846 0.2908 3.6988 23 6 -1.3613 1.6428 3.9269 24 6 -0.3482 2.5330 3.6237 25 6 0.8419 2.0713 3.0933 26 1 -0.3634 0.5029 0.8962 27 1 -0.3633 0.5247 -0.8836 28 1 -0.3633 -1.0276 -0.0126 29 1 1.2756 -1.7716 -2.8432 30 1 0.3469 -1.8696 -1.4668 31 1 3.8131 -2.0501 -1.2700 32 1 2.3330 -2.8304 -0.6260 33 1 4.1105 -0.7191 0.7169 34 1 3.4943 -2.2535 1.4083 35 1 5.6714 1.4368 3.4847 36 1 0.1408 -1.2263 2.9832 37 1 -1.9763 -0.4047 3.9353 38 1 -2.2911 2.0034 4.3415 39 1 -0.4865 3.5892 3.8015 40 1 1.6335 2.7668 2.8569 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383394824.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:24 Heat of formation + Delta-G solvation = 16.668151 kcal Electronic energy + Delta-G solvation = -20425.194794 eV Core-core repulsion = 17624.700092 eV Total energy + Delta-G solvation = -2800.494702 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.73401 -39.31987 -36.02252 -34.04842 -32.69657 -31.67078 -31.41561 -29.56938 -27.48245 -25.96235 -24.65963 -23.21250 -21.98422 -21.55560 -20.07180 -18.58561 -17.73100 -17.39341 -16.67494 -16.17786 -15.89302 -15.60379 -15.20859 -15.01481 -14.41084 -14.25934 -14.01901 -13.77226 -13.55433 -13.34189 -13.08114 -12.89510 -12.73849 -12.66019 -12.56043 -12.20835 -11.95716 -11.71998 -11.62877 -11.49872 -11.41682 -11.06669 -10.68648 -9.56546 -9.50276 -9.24056 -8.99909 -8.18203 -6.28807 0.74300 0.80727 1.35811 1.37509 1.47627 2.36034 2.99208 3.26891 3.51007 3.68677 3.83104 3.96512 4.25687 4.29582 4.33482 4.43397 4.45577 4.59165 4.66425 4.74769 4.88816 4.89740 4.97227 4.98744 5.16192 5.19751 5.20121 5.29387 5.35340 5.45907 5.47433 5.58493 5.65994 5.80916 5.83532 6.01484 6.12926 6.28627 6.37971 6.43763 6.69222 6.77820 6.91638 7.38126 8.86257 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.013323 B = 0.010524 C = 0.006646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.177996 B = 2659.995978 C = 4211.959231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.062 3.938 3 H 0.009 0.991 4 C 0.096 3.904 5 H 0.075 0.925 6 N -0.831 5.831 7 C -0.146 4.146 8 C 0.066 3.934 9 N -0.504 5.504 10 C 0.225 3.775 11 H 0.008 0.992 12 C -0.501 4.501 13 H 0.051 0.949 14 C 0.021 3.979 15 N -0.921 5.921 16 Si 0.951 3.049 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.269 1.269 20 C -0.041 4.041 21 C -0.104 4.104 22 C -0.128 4.128 23 C -0.142 4.142 24 C -0.126 4.126 25 C -0.153 4.153 26 H 0.038 0.962 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.347 0.653 30 H 0.348 0.652 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.009 0.991 34 H 0.060 0.940 35 H 0.262 0.738 36 H 0.111 0.889 37 H 0.141 0.859 38 H 0.146 0.854 39 H 0.133 0.867 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.944 -3.401 -5.435 11.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.048 4.048 3 H 0.027 0.973 4 C -0.017 4.017 5 H 0.093 0.907 6 N -0.362 5.362 7 C -0.186 4.186 8 C -0.063 4.063 9 N -0.229 5.229 10 C 0.119 3.881 11 H 0.026 0.974 12 C -0.540 4.540 13 H 0.069 0.931 14 C -0.178 4.178 15 N -0.560 5.560 16 Si 0.777 3.223 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.194 1.194 20 C -0.042 4.042 21 C -0.123 4.123 22 C -0.145 4.145 23 C -0.160 4.160 24 C -0.144 4.144 25 C -0.172 4.172 26 H 0.057 0.943 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.161 0.839 30 H 0.163 0.837 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.027 0.973 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.129 0.871 37 H 0.158 0.842 38 H 0.163 0.837 39 H 0.151 0.849 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.399 -2.879 -5.337 11.186 hybrid contribution 2.360 -0.239 0.885 2.532 sum -7.039 -3.119 -4.453 8.894 Atomic orbital electron populations 1.21456 0.92784 1.01653 1.00308 1.22397 0.97487 0.94357 0.90518 0.97301 1.22083 0.91294 0.95174 0.93153 0.90729 1.58948 1.20164 1.45650 1.11447 1.23314 1.00775 0.99016 0.95474 1.22609 0.91531 0.97192 0.94960 1.64914 1.26080 1.26904 1.04985 1.18467 0.89052 0.91082 0.89528 0.97367 1.21075 1.03686 1.09065 1.20154 0.93091 1.25687 0.97974 0.95480 0.98699 1.70027 1.19503 1.24593 1.41915 0.85656 0.78608 0.78258 0.79804 1.19784 1.21008 1.19356 1.20273 0.95221 0.92799 0.95904 1.20883 0.93198 0.99225 0.98951 1.21396 0.97390 0.96365 0.99385 1.21266 0.99558 0.93191 1.01936 1.21226 0.93220 1.00392 0.99547 1.21053 0.97820 0.95443 1.02871 0.94271 0.92093 0.91950 0.83866 0.83710 0.90519 0.90072 0.97284 0.92112 0.92842 0.87099 0.84167 0.83651 0.84927 0.89354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.48 8.00 71.98 0.58 -2.91 16 2 C 0.06 2.35 2.88 45.06 0.13 2.48 16 3 H 0.01 0.39 7.53 -2.39 -0.02 0.38 16 4 C 0.10 2.94 4.11 45.79 0.19 3.13 16 5 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 6 N -0.83 -19.88 8.14 -165.04 -1.34 -21.23 16 7 C -0.15 -4.48 6.76 31.80 0.21 -4.26 16 8 C 0.07 2.76 5.51 86.65 0.48 3.23 16 9 N -0.50 -21.65 4.28 -841.85 -3.61 -25.25 16 10 C 0.23 11.34 1.83 43.43 0.08 11.42 16 11 H 0.01 0.49 6.31 -2.39 -0.02 0.48 16 12 C -0.50 -27.22 7.03 25.60 0.18 -27.04 16 13 H 0.05 2.81 7.82 -2.91 -0.02 2.78 16 14 C 0.02 1.18 5.45 84.65 0.46 1.64 16 15 N -0.92 -53.47 12.62 21.45 0.27 -53.20 16 16 Si 0.95 43.82 29.54 68.60 2.03 45.85 16 17 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 18 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 19 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 20 C -0.04 -1.86 3.25 -19.87 -0.06 -1.92 16 21 C -0.10 -4.15 7.54 22.27 0.17 -3.98 16 22 C -0.13 -4.16 10.05 22.27 0.22 -3.94 16 23 C -0.14 -4.35 10.05 22.27 0.22 -4.13 16 24 C -0.13 -4.40 10.05 22.27 0.22 -4.18 16 25 C -0.15 -6.66 9.67 22.27 0.22 -6.45 16 26 H 0.04 1.44 5.26 -2.39 -0.01 1.42 16 27 H 0.06 1.90 7.94 -2.39 -0.02 1.88 16 28 H 0.06 1.90 6.67 -2.39 -0.02 1.88 16 29 H 0.35 6.60 9.08 -89.70 -0.81 5.78 16 30 H 0.35 8.04 7.13 -89.69 -0.64 7.40 16 31 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.08 2.24 8.02 -2.38 -0.02 2.22 16 33 H 0.01 0.43 8.02 -2.39 -0.02 0.41 16 34 H 0.06 2.66 7.87 -2.39 -0.02 2.64 16 35 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 36 H 0.11 4.52 7.94 -2.91 -0.02 4.49 16 37 H 0.14 3.61 8.06 -2.91 -0.02 3.58 16 38 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 39 H 0.13 3.85 8.06 -2.91 -0.02 3.83 16 40 H 0.09 4.14 7.99 -2.91 -0.02 4.12 16 Total: -1.00 -61.31 314.40 0.22 -61.09 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: -0.42 Total: 29.66 kcal Atomic # 6 Polarization: -40.21 SS G_CDS: 3.30 Total: -36.91 kcal Atomic # 7 Polarization: -95.00 SS G_CDS: -4.68 Total: -99.68 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -61.31 0.22 -61.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383394824.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.754 kcal (2) G-P(sol) polarization free energy of solvation -61.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds