Wall clock time and date at job start Mon Mar 30 2020 06:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 110.46180 * 2 1 4 4 C 1.54378 * 110.41196 * 237.58582 * 2 1 3 5 5 H 1.08993 * 110.41650 * 336.30967 * 4 2 1 6 6 N 1.46902 * 110.32239 * 98.47744 * 4 2 1 7 7 C 1.54268 * 105.05801 * 217.36732 * 4 2 1 8 8 C 1.54374 * 105.05964 * 0.02562 * 7 4 2 9 9 N 1.48556 * 104.59995 * 23.85063 * 8 7 4 10 10 C 1.46900 * 111.00279 * 200.95969 * 9 8 7 11 11 H 1.09001 * 109.46962 * 62.51795 * 10 9 8 12 12 C 1.50700 * 109.47008 * 182.51419 * 10 9 8 13 13 H 1.08004 * 119.99581 * 54.70434 * 12 10 9 14 14 C 1.37873 * 120.00257 * 234.69595 * 12 10 9 15 15 N 1.31521 * 119.99806 * 10.72231 * 14 12 10 16 16 Si 1.86797 * 120.00041 * 190.72035 * 14 12 10 17 17 H 1.48498 * 109.47353 * 269.99829 * 16 14 12 18 18 H 1.48499 * 109.47194 * 30.00385 * 16 14 12 19 19 H 1.48506 * 109.46973 * 150.00349 * 16 14 12 20 20 C 1.50694 * 109.46904 * 302.51641 * 10 9 8 21 21 C 1.38233 * 120.00255 * 313.20063 * 20 10 9 22 22 C 1.38230 * 119.99777 * 179.74515 * 21 20 10 23 23 C 1.38242 * 120.00230 * 0.55195 * 22 21 20 24 24 C 1.38229 * 119.99676 * 359.70529 * 23 22 21 25 25 C 1.38236 * 120.00419 * 0.02562 * 24 23 22 26 26 H 1.08992 * 109.47420 * 297.58393 * 1 2 3 27 27 H 1.09008 * 109.46858 * 57.58810 * 1 2 3 28 28 H 1.09004 * 109.46641 * 177.58279 * 1 2 3 29 29 H 1.00898 * 111.00000 * 177.09265 * 6 4 2 30 30 H 1.00903 * 110.99718 * 301.03967 * 6 4 2 31 31 H 1.09004 * 110.32143 * 241.10136 * 7 4 2 32 32 H 1.08994 * 110.32112 * 118.90104 * 7 4 2 33 33 H 1.09011 * 110.40972 * 265.06851 * 8 7 4 34 34 H 1.09000 * 110.51006 * 142.68742 * 8 7 4 35 35 H 0.96993 * 120.00086 * 356.71852 * 15 14 12 36 36 H 1.07991 * 119.99657 * 359.97438 * 21 20 10 37 37 H 1.08004 * 120.00356 * 180.27338 * 22 21 20 38 38 H 1.08002 * 120.00044 * 179.72279 * 23 22 21 39 39 H 1.08002 * 119.99915 * 179.97438 * 24 23 22 40 40 H 1.07993 * 120.00033 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9111 1.0212 0.0000 4 6 2.0684 -0.7756 -1.2214 5 1 1.3244 -1.4879 -1.5776 6 7 2.4367 0.1563 -2.2957 7 6 3.3179 -1.5188 -0.7053 8 6 3.4287 -1.1303 0.7846 9 7 2.0477 -0.7471 1.1755 10 6 2.0560 0.1002 2.3755 11 1 2.5890 1.0268 2.1623 12 6 0.6384 0.4170 2.7766 13 1 -0.0674 -0.3834 2.9431 14 6 0.2423 1.7286 2.9310 15 7 1.0273 2.7042 2.5289 16 14 -1.4092 2.1199 3.7112 17 1 -2.4513 2.1897 2.6556 18 1 -1.7613 1.0553 4.6849 19 1 -1.3278 3.4258 4.4136 20 6 2.7454 -0.6285 3.5001 21 6 2.4251 -1.9461 3.7688 22 6 3.0613 -2.6161 4.7970 23 6 4.0095 -1.9651 5.5638 24 6 4.3259 -0.6459 5.2985 25 6 3.6938 0.0225 4.2667 26 1 -0.3634 0.4758 0.9108 27 1 -0.3633 0.5509 -0.8677 28 1 -0.3633 -1.0268 -0.0433 29 1 2.8342 -0.3364 -3.0813 30 1 1.6436 0.7112 -2.5806 31 1 4.2043 -1.1922 -1.2492 32 1 3.1862 -2.5960 -0.8065 33 1 4.1069 -0.2858 0.9078 34 1 3.7695 -1.9798 1.3765 35 1 1.9047 2.5031 2.1675 36 1 1.6806 -2.4531 3.1730 37 1 2.8143 -3.6469 5.0042 38 1 4.5033 -2.4872 6.3700 39 1 5.0664 -0.1371 5.8978 40 1 3.9407 1.0532 4.0597 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383394825.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:28 Heat of formation + Delta-G solvation = 31.105319 kcal Electronic energy + Delta-G solvation = -20393.174410 eV Core-core repulsion = 17593.305750 eV Total energy + Delta-G solvation = -2799.868660 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.17642 -37.88816 -34.53117 -32.54996 -30.86231 -30.43322 -30.13333 -28.07401 -25.62381 -24.03717 -22.88808 -21.77577 -20.90128 -19.63483 -19.24067 -16.90386 -16.14504 -15.51161 -15.09564 -14.73412 -14.50678 -13.85351 -13.75738 -13.62205 -13.33508 -12.73754 -12.57405 -12.48802 -12.12707 -11.86361 -11.36028 -11.15738 -10.98223 -10.86688 -10.75529 -10.46712 -10.40227 -10.20476 -10.19757 -9.82431 -9.79930 -8.94734 -8.44122 -8.40756 -8.18108 -7.75602 -7.41625 -6.45107 -4.11723 2.14334 2.19225 3.37327 3.42823 3.57800 4.40386 4.52409 4.73306 5.14872 5.18397 5.23448 5.38512 5.54747 5.55455 5.63362 5.75395 5.87874 6.07020 6.12812 6.22267 6.28978 6.34388 6.38140 6.45051 6.51027 6.51244 6.60544 6.74084 6.80981 6.89869 7.02000 7.17838 7.19795 7.42588 7.49710 7.57327 7.65345 7.69169 7.86654 8.07338 8.24586 8.50685 8.74867 9.50958 10.87875 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.012703 B = 0.010932 C = 0.006696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.607755 B = 2560.700341 C = 4180.889719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.093 3.907 3 H 0.053 0.947 4 C 0.082 3.918 5 H 0.038 0.962 6 N -0.843 5.843 7 C -0.116 4.116 8 C 0.031 3.969 9 N -0.496 5.496 10 C 0.212 3.788 11 H 0.028 0.972 12 C -0.563 4.563 13 H 0.059 0.941 14 C 0.026 3.974 15 N -0.900 5.900 16 Si 1.064 2.936 17 H -0.286 1.286 18 H -0.286 1.286 19 H -0.284 1.284 20 C -0.027 4.027 21 C -0.100 4.100 22 C -0.131 4.131 23 C -0.151 4.151 24 C -0.125 4.125 25 C -0.130 4.130 26 H 0.105 0.895 27 H 0.027 0.973 28 H 0.041 0.959 29 H 0.333 0.667 30 H 0.340 0.660 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.031 0.969 34 H 0.068 0.932 35 H 0.270 0.730 36 H 0.121 0.879 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.338 -7.172 -3.181 8.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.016 4.016 3 H 0.071 0.929 4 C -0.029 4.029 5 H 0.056 0.944 6 N -0.373 5.373 7 C -0.155 4.155 8 C -0.097 4.097 9 N -0.221 5.221 10 C 0.106 3.894 11 H 0.046 0.954 12 C -0.601 4.601 13 H 0.078 0.922 14 C -0.180 4.180 15 N -0.536 5.536 16 Si 0.892 3.108 17 H -0.213 1.213 18 H -0.212 1.212 19 H -0.209 1.209 20 C -0.028 4.028 21 C -0.118 4.118 22 C -0.149 4.149 23 C -0.169 4.169 24 C -0.143 4.143 25 C -0.149 4.149 26 H 0.123 0.877 27 H 0.046 0.954 28 H 0.060 0.940 29 H 0.145 0.855 30 H 0.152 0.848 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.049 0.951 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.139 0.861 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.496 -6.056 -2.102 6.879 hybrid contribution 0.907 -1.056 -1.054 1.746 sum 3.402 -7.112 -3.157 8.492 Atomic orbital electron populations 1.22068 0.94242 1.00587 1.03199 1.22197 0.95909 0.95526 0.87924 0.92945 1.22285 0.95525 0.92838 0.92276 0.94370 1.58830 1.37069 1.28145 1.13278 1.22327 0.97523 0.99033 0.96574 1.22979 0.93049 0.99449 0.94234 1.65709 1.14292 1.39076 1.03016 1.18776 0.96783 0.89400 0.84476 0.95396 1.21612 0.94484 0.94519 1.49507 0.92226 1.25853 1.04914 0.92482 0.94788 1.70842 1.10526 1.34616 1.37659 0.83611 0.74491 0.75975 0.76687 1.21267 1.21158 1.20923 1.20445 0.91567 0.93374 0.97387 1.20961 0.99230 0.94726 0.96908 1.21052 0.97836 0.99239 0.96796 1.20840 1.00162 0.95244 1.00648 1.20930 1.00370 0.94905 0.98130 1.21015 0.97551 0.99518 0.96814 0.87672 0.95388 0.94037 0.85533 0.84788 0.91549 0.92067 0.95089 0.91369 0.91747 0.86101 0.87402 0.87533 0.87394 0.87241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 9.03 37.16 0.34 -2.62 16 2 C 0.09 1.91 2.50 -66.05 -0.16 1.75 16 3 H 0.05 1.25 7.78 -51.93 -0.40 0.84 16 4 C 0.08 1.38 3.74 -66.33 -0.25 1.13 16 5 H 0.04 0.63 7.83 -51.93 -0.41 0.22 16 6 N -0.84 -12.36 9.14 -3.49 -0.03 -12.39 16 7 C -0.12 -1.88 6.78 -25.35 -0.17 -2.05 16 8 C 0.03 0.60 5.57 -2.19 -0.01 0.59 16 9 N -0.50 -10.51 4.48 -216.98 -0.97 -11.48 16 10 C 0.21 5.02 1.76 -70.02 -0.12 4.89 16 11 H 0.03 0.75 5.29 -51.93 -0.27 0.47 16 12 C -0.56 -14.45 5.40 -34.44 -0.19 -14.64 16 13 H 0.06 1.59 7.84 -52.48 -0.41 1.18 16 14 C 0.03 0.68 4.74 -17.82 -0.08 0.60 16 15 N -0.90 -25.35 13.65 55.43 0.76 -24.59 16 16 Si 1.06 24.18 29.92 -169.99 -5.09 19.10 16 17 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 20 C -0.03 -0.58 3.90 -104.63 -0.41 -0.99 16 21 C -0.10 -2.03 8.66 -39.59 -0.34 -2.37 16 22 C -0.13 -2.32 10.05 -39.58 -0.40 -2.72 16 23 C -0.15 -2.55 10.05 -39.58 -0.40 -2.95 16 24 C -0.13 -2.26 10.05 -39.59 -0.40 -2.65 16 25 C -0.13 -2.72 9.67 -39.58 -0.38 -3.10 16 26 H 0.10 2.49 4.70 -51.93 -0.24 2.25 16 27 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 28 H 0.04 0.80 8.09 -51.93 -0.42 0.38 16 29 H 0.33 3.99 9.06 -39.29 -0.36 3.63 16 30 H 0.34 4.72 9.05 -39.29 -0.36 4.36 16 31 H 0.07 1.01 7.95 -51.93 -0.41 0.60 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.03 0.63 8.00 -51.92 -0.42 0.21 16 34 H 0.07 1.27 7.49 -51.93 -0.39 0.88 16 35 H 0.27 7.67 6.30 -40.82 -0.26 7.41 16 36 H 0.12 2.50 7.93 -52.49 -0.42 2.08 16 37 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 38 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 39 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 40 H 0.11 2.31 7.99 -52.49 -0.42 1.89 16 LS Contribution 316.12 15.07 4.76 4.76 Total: -1.00 -27.50 316.12 -9.64 -37.14 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -6.09 Total: 12.60 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: -2.98 Total: -25.13 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: -0.25 Total: -48.47 kcal Atomic # 14 Polarization: 24.18 SS G_CDS: -5.09 Total: 19.10 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.50 -9.64 -37.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383394825.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.246 kcal (2) G-P(sol) polarization free energy of solvation -27.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds