Wall clock time and date at job start Mon Mar 30 2020 06:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 110.46180 * 2 1 4 4 C 1.54378 * 110.41196 * 237.58582 * 2 1 3 5 5 H 1.08993 * 110.41650 * 336.30967 * 4 2 1 6 6 N 1.46902 * 110.32239 * 98.47744 * 4 2 1 7 7 C 1.54268 * 105.05801 * 217.36732 * 4 2 1 8 8 C 1.54374 * 105.05964 * 0.02562 * 7 4 2 9 9 N 1.48556 * 104.59995 * 23.85063 * 8 7 4 10 10 C 1.46900 * 111.00279 * 200.95969 * 9 8 7 11 11 H 1.09001 * 109.46962 * 62.51795 * 10 9 8 12 12 C 1.50700 * 109.47008 * 182.51419 * 10 9 8 13 13 H 1.08004 * 119.99581 * 54.70434 * 12 10 9 14 14 C 1.37873 * 120.00257 * 234.69595 * 12 10 9 15 15 N 1.31521 * 119.99806 * 10.72231 * 14 12 10 16 16 Si 1.86797 * 120.00041 * 190.72035 * 14 12 10 17 17 H 1.48498 * 109.47353 * 269.99829 * 16 14 12 18 18 H 1.48499 * 109.47194 * 30.00385 * 16 14 12 19 19 H 1.48506 * 109.46973 * 150.00349 * 16 14 12 20 20 C 1.50694 * 109.46904 * 302.51641 * 10 9 8 21 21 C 1.38233 * 120.00255 * 313.20063 * 20 10 9 22 22 C 1.38230 * 119.99777 * 179.74515 * 21 20 10 23 23 C 1.38242 * 120.00230 * 0.55195 * 22 21 20 24 24 C 1.38229 * 119.99676 * 359.70529 * 23 22 21 25 25 C 1.38236 * 120.00419 * 0.02562 * 24 23 22 26 26 H 1.08992 * 109.47420 * 297.58393 * 1 2 3 27 27 H 1.09008 * 109.46858 * 57.58810 * 1 2 3 28 28 H 1.09004 * 109.46641 * 177.58279 * 1 2 3 29 29 H 1.00898 * 111.00000 * 177.09265 * 6 4 2 30 30 H 1.00903 * 110.99718 * 301.03967 * 6 4 2 31 31 H 1.09004 * 110.32143 * 241.10136 * 7 4 2 32 32 H 1.08994 * 110.32112 * 118.90104 * 7 4 2 33 33 H 1.09011 * 110.40972 * 265.06851 * 8 7 4 34 34 H 1.09000 * 110.51006 * 142.68742 * 8 7 4 35 35 H 0.96993 * 120.00086 * 356.71852 * 15 14 12 36 36 H 1.07991 * 119.99657 * 359.97438 * 21 20 10 37 37 H 1.08004 * 120.00356 * 180.27338 * 22 21 20 38 38 H 1.08002 * 120.00044 * 179.72279 * 23 22 21 39 39 H 1.08002 * 119.99915 * 179.97438 * 24 23 22 40 40 H 1.07993 * 120.00033 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9111 1.0212 0.0000 4 6 2.0684 -0.7756 -1.2214 5 1 1.3244 -1.4879 -1.5776 6 7 2.4367 0.1563 -2.2957 7 6 3.3179 -1.5188 -0.7053 8 6 3.4287 -1.1303 0.7846 9 7 2.0477 -0.7471 1.1755 10 6 2.0560 0.1002 2.3755 11 1 2.5890 1.0268 2.1623 12 6 0.6384 0.4170 2.7766 13 1 -0.0674 -0.3834 2.9431 14 6 0.2423 1.7286 2.9310 15 7 1.0273 2.7042 2.5289 16 14 -1.4092 2.1199 3.7112 17 1 -2.4513 2.1897 2.6556 18 1 -1.7613 1.0553 4.6849 19 1 -1.3278 3.4258 4.4136 20 6 2.7454 -0.6285 3.5001 21 6 2.4251 -1.9461 3.7688 22 6 3.0613 -2.6161 4.7970 23 6 4.0095 -1.9651 5.5638 24 6 4.3259 -0.6459 5.2985 25 6 3.6938 0.0225 4.2667 26 1 -0.3634 0.4758 0.9108 27 1 -0.3633 0.5509 -0.8677 28 1 -0.3633 -1.0268 -0.0433 29 1 2.8342 -0.3364 -3.0813 30 1 1.6436 0.7112 -2.5806 31 1 4.2043 -1.1922 -1.2492 32 1 3.1862 -2.5960 -0.8065 33 1 4.1069 -0.2858 0.9078 34 1 3.7695 -1.9798 1.3765 35 1 1.9047 2.5031 2.1675 36 1 1.6806 -2.4531 3.1730 37 1 2.8143 -3.6469 5.0042 38 1 4.5033 -2.4872 6.3700 39 1 5.0664 -0.1371 5.8978 40 1 3.9407 1.0532 4.0597 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383394825.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:28 Heat of formation + Delta-G solvation = 13.264635 kcal Electronic energy + Delta-G solvation = -20393.948040 eV Core-core repulsion = 17593.305750 eV Total energy + Delta-G solvation = -2800.642290 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.78000 -39.38424 -36.19942 -34.26262 -32.39776 -32.06099 -31.63390 -29.59306 -27.47415 -25.58190 -24.67915 -23.29573 -22.44514 -21.28105 -20.75762 -18.81129 -17.62503 -16.90437 -16.68458 -16.16152 -16.02984 -15.68555 -15.43751 -15.15168 -14.89855 -14.33096 -14.18129 -14.09555 -13.72052 -13.42023 -12.95082 -12.82087 -12.60462 -12.52414 -12.36988 -12.06078 -11.98354 -11.89949 -11.76197 -11.55528 -11.41931 -10.78243 -10.42968 -9.68796 -9.65489 -9.36455 -9.21637 -8.53233 -6.20486 0.62351 0.68553 1.51057 1.58837 1.75788 2.52847 2.95505 3.23581 3.33006 3.71260 3.77055 3.88758 4.12637 4.17366 4.24349 4.33517 4.36088 4.44660 4.65591 4.68672 4.73770 4.81529 4.83629 4.89184 4.92887 4.98530 5.11162 5.13676 5.25691 5.30454 5.35478 5.65799 5.70845 5.76697 5.87473 5.97952 6.10309 6.19641 6.29226 6.41830 6.53125 6.62226 6.71420 7.48668 8.77026 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.012703 B = 0.010932 C = 0.006696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.607755 B = 2560.700341 C = 4180.889719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.091 3.909 3 H 0.010 0.990 4 C 0.093 3.907 5 H 0.053 0.947 6 N -0.848 5.848 7 C -0.107 4.107 8 C 0.034 3.966 9 N -0.495 5.495 10 C 0.219 3.781 11 H -0.013 1.013 12 C -0.554 4.554 13 H 0.047 0.953 14 C -0.017 4.017 15 N -0.931 5.931 16 Si 1.102 2.898 17 H -0.271 1.271 18 H -0.273 1.273 19 H -0.287 1.287 20 C -0.053 4.053 21 C -0.113 4.113 22 C -0.123 4.123 23 C -0.139 4.139 24 C -0.122 4.122 25 C -0.156 4.156 26 H 0.070 0.930 27 H 0.045 0.955 28 H 0.052 0.948 29 H 0.352 0.648 30 H 0.345 0.655 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.007 0.993 34 H 0.073 0.927 35 H 0.254 0.746 36 H 0.112 0.888 37 H 0.144 0.856 38 H 0.150 0.850 39 H 0.137 0.863 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.689 -9.867 -2.808 10.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.018 4.018 3 H 0.028 0.972 4 C -0.019 4.019 5 H 0.071 0.929 6 N -0.381 5.381 7 C -0.145 4.145 8 C -0.095 4.095 9 N -0.220 5.220 10 C 0.112 3.888 11 H 0.005 0.995 12 C -0.593 4.593 13 H 0.065 0.935 14 C -0.217 4.217 15 N -0.569 5.569 16 Si 0.925 3.075 17 H -0.197 1.197 18 H -0.199 1.199 19 H -0.213 1.213 20 C -0.054 4.054 21 C -0.131 4.131 22 C -0.141 4.141 23 C -0.157 4.157 24 C -0.140 4.140 25 C -0.175 4.175 26 H 0.089 0.911 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.167 0.833 30 H 0.158 0.842 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.026 0.974 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.130 0.870 37 H 0.161 0.839 38 H 0.168 0.832 39 H 0.154 0.846 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.852 -8.778 -1.753 9.395 hybrid contribution 0.891 -0.299 -1.141 1.478 sum 3.743 -9.077 -2.894 10.236 Atomic orbital electron populations 1.21927 0.94329 1.01029 1.02221 1.22196 0.95915 0.93913 0.89803 0.97207 1.22093 0.95949 0.92621 0.91206 0.92942 1.58725 1.37491 1.28099 1.13774 1.22319 0.97786 1.00378 0.94044 1.22983 0.91233 0.98607 0.96676 1.65618 1.15779 1.37979 1.02626 1.18557 0.95424 0.88561 0.86263 0.99508 1.21671 0.95316 0.93924 1.48352 0.93477 1.26943 1.07107 0.92747 0.94896 1.70941 1.10485 1.35192 1.40285 0.83135 0.71973 0.75820 0.76598 1.19684 1.19859 1.21330 1.20331 0.93112 0.94581 0.97412 1.20946 0.99864 0.94016 0.98272 1.21432 0.96777 1.00686 0.95195 1.21325 0.99043 0.94532 1.00771 1.21259 1.00076 0.95669 0.96967 1.21050 0.98814 0.99057 0.98542 0.91118 0.93653 0.92882 0.83321 0.84229 0.90217 0.89662 0.97434 0.90836 0.93424 0.86985 0.83855 0.83243 0.84554 0.89340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.74 9.03 71.98 0.65 -5.09 16 2 C 0.09 3.83 2.50 45.06 0.11 3.94 16 3 H 0.01 0.50 7.78 -2.39 -0.02 0.48 16 4 C 0.09 3.01 3.74 45.81 0.17 3.18 16 5 H 0.05 1.58 7.83 -2.39 -0.02 1.56 16 6 N -0.85 -23.76 9.14 -164.96 -1.51 -25.27 16 7 C -0.11 -3.27 6.78 31.49 0.21 -3.06 16 8 C 0.03 1.29 5.57 86.45 0.48 1.77 16 9 N -0.50 -21.66 4.48 -840.40 -3.76 -25.43 16 10 C 0.22 10.97 1.76 43.42 0.08 11.05 16 11 H -0.01 -0.73 5.29 -2.39 -0.01 -0.75 16 12 C -0.55 -29.78 5.40 25.60 0.14 -29.64 16 13 H 0.05 2.60 7.84 -2.91 -0.02 2.58 16 14 C -0.02 -0.95 4.74 84.65 0.40 -0.55 16 15 N -0.93 -55.67 13.65 21.45 0.29 -55.38 16 16 Si 1.10 49.98 29.92 68.60 2.05 52.03 16 17 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 18 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 19 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 20 C -0.05 -2.42 3.90 -19.87 -0.08 -2.49 16 21 C -0.11 -4.50 8.66 22.27 0.19 -4.30 16 22 C -0.12 -3.95 10.05 22.27 0.22 -3.73 16 23 C -0.14 -4.15 10.05 22.27 0.22 -3.93 16 24 C -0.12 -4.16 10.05 22.27 0.22 -3.93 16 25 C -0.16 -6.69 9.67 22.27 0.22 -6.47 16 26 H 0.07 3.47 4.70 -2.39 -0.01 3.46 16 27 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 28 H 0.05 2.04 8.09 -2.39 -0.02 2.02 16 29 H 0.35 7.58 9.06 -89.70 -0.81 6.77 16 30 H 0.34 9.22 9.05 -89.69 -0.81 8.41 16 31 H 0.08 2.25 7.95 -2.38 -0.02 2.23 16 32 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.01 0.31 8.00 -2.38 -0.02 0.29 16 34 H 0.07 2.71 7.49 -2.39 -0.02 2.70 16 35 H 0.25 15.70 6.30 -92.71 -0.58 15.12 16 36 H 0.11 4.59 7.93 -2.91 -0.02 4.57 16 37 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 38 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 39 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 40 H 0.09 4.04 7.99 -2.91 -0.02 4.02 16 Total: -1.00 -63.60 316.12 -0.08 -63.68 By element: Atomic # 1 Polarization: 34.04 SS G_CDS: -0.40 Total: 33.64 kcal Atomic # 6 Polarization: -46.52 SS G_CDS: 3.25 Total: -43.27 kcal Atomic # 7 Polarization: -101.10 SS G_CDS: -4.98 Total: -106.08 kcal Atomic # 14 Polarization: 49.98 SS G_CDS: 2.05 Total: 52.03 kcal Total: -63.60 -0.08 -63.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383394825.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.946 kcal (2) G-P(sol) polarization free energy of solvation -63.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds