Wall clock time and date at job start Mon Mar 30 2020 06:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.50389 * 2 1 4 4 C 1.53043 * 109.50045 * 239.92343 * 2 1 3 5 5 N 1.46850 * 109.51995 * 180.87930 * 4 2 1 6 6 C 1.46848 * 111.19786 * 61.74391 * 5 4 2 7 7 C 1.53037 * 109.52219 * 298.25291 * 6 5 4 8 8 C 1.53114 * 109.50707 * 120.11814 * 2 1 3 9 9 H 1.08997 * 109.52293 * 297.50188 * 8 2 1 10 10 N 1.46510 * 109.52062 * 57.62449 * 8 2 1 11 11 C 1.38857 * 119.99761 * 205.00408 * 10 8 2 12 12 C 1.39568 * 119.84462 * 359.72252 * 11 10 8 13 13 C 1.36342 * 120.16030 * 179.76796 * 12 11 10 14 14 C 1.40882 * 119.83641 * 0.52752 * 13 12 11 15 15 C 1.41135 * 120.15771 * 179.74450 * 14 13 12 16 16 H 1.08002 * 120.00519 * 204.59198 * 15 14 13 17 17 C 1.39867 * 119.99992 * 24.59563 * 15 14 13 18 18 N 1.30901 * 119.99731 * 17.96544 * 17 15 14 19 19 Si 1.86797 * 119.99990 * 197.97035 * 17 15 14 20 20 H 1.48498 * 109.46968 * 90.00190 * 19 17 15 21 21 H 1.48508 * 109.47046 * 209.99504 * 19 17 15 22 22 H 1.48492 * 109.47495 * 329.99686 * 19 17 15 23 23 C 1.40889 * 119.68877 * 359.73084 * 14 13 12 24 24 C 1.36338 * 119.83866 * 359.97438 * 23 14 13 25 25 H 1.08997 * 109.46870 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46841 * 300.07733 * 1 2 3 27 27 H 1.09002 * 109.47365 * 60.07557 * 1 2 3 28 28 H 1.08999 * 109.45959 * 300.88985 * 4 2 1 29 29 H 1.08995 * 109.46375 * 60.86441 * 4 2 1 30 30 H 1.00897 * 110.99934 * 185.83630 * 5 4 2 31 31 H 1.09007 * 109.46008 * 178.24052 * 6 5 4 32 32 H 1.08998 * 109.45668 * 58.26685 * 6 5 4 33 33 H 1.09004 * 109.50591 * 299.24495 * 7 6 5 34 34 H 1.08997 * 109.53640 * 179.14527 * 7 6 5 35 35 H 0.96991 * 119.99664 * 25.00382 * 10 8 2 36 36 H 1.08002 * 119.91965 * 359.97438 * 12 11 10 37 37 H 1.08001 * 120.08066 * 180.23822 * 13 12 11 38 38 H 0.97000 * 120.00426 * 179.97438 * 18 17 15 39 39 H 1.08001 * 120.08091 * 179.97438 * 23 14 13 40 40 H 1.07994 * 119.92473 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0409 -0.7230 -1.2484 5 7 3.5093 -0.7416 -1.2382 6 6 4.0229 -1.4730 -0.0730 7 6 3.5713 -0.7724 1.2104 8 6 2.0413 -0.7242 1.2484 9 1 1.7158 -0.1878 2.1396 10 7 1.5078 -2.0884 1.2759 11 6 1.3772 -2.7585 2.4851 12 6 1.7605 -2.1315 3.6716 13 6 1.6306 -2.7817 4.8629 14 6 1.1184 -4.0937 4.8932 15 6 0.9861 -4.7751 6.1221 16 1 0.9845 -5.8549 6.1435 17 6 0.8569 -4.0519 7.3123 18 7 0.5081 -2.7908 7.2772 19 14 1.1824 -4.8858 8.9518 20 1 2.6164 -4.7360 9.3073 21 1 0.3435 -4.2556 10.0028 22 1 0.8460 -6.3284 8.8489 23 6 0.7385 -4.7224 3.6909 24 6 0.8683 -4.0580 2.5075 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5150 0.8893 27 1 -0.3634 0.5127 -0.8907 28 1 1.6648 -1.7460 -1.2550 29 1 1.6905 -0.2015 -2.1390 30 1 3.8719 -1.1286 -2.0966 31 1 5.1121 -1.4962 -0.1101 32 1 3.6373 -2.4924 -0.0854 33 1 3.9678 0.2428 1.2298 34 1 3.9397 -1.3236 2.0755 35 1 1.2459 -2.5234 0.4496 36 1 2.1579 -1.1276 3.6463 37 1 1.9241 -2.2938 5.7807 38 1 0.4181 -2.2892 8.1026 39 1 0.3455 -5.7283 3.7067 40 1 0.5772 -4.5384 1.5852 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384051328.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:36 Heat of formation + Delta-G solvation = 15.734924 kcal Electronic energy + Delta-G solvation = -19603.496535 eV Core-core repulsion = 16802.961365 eV Total energy + Delta-G solvation = -2800.535170 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.48256 -37.42044 -34.55895 -33.23978 -32.31505 -30.54365 -29.40299 -28.15435 -26.27099 -24.39420 -23.45681 -21.76848 -20.94397 -20.46615 -18.40019 -17.19110 -16.71170 -16.05158 -15.01001 -14.99912 -14.71683 -14.20910 -13.84744 -13.81167 -13.18727 -12.85122 -12.58321 -12.41292 -11.99836 -11.89396 -11.77623 -11.67782 -11.37997 -11.28501 -11.02601 -10.87700 -10.68577 -10.56684 -10.29938 -10.05393 -9.67268 -9.25271 -9.18066 -8.55213 -8.40590 -7.46824 -6.62088 -6.34854 -4.00984 2.93361 3.12009 3.16373 3.19655 3.37855 4.06975 4.16585 4.39622 4.76804 4.77824 4.98048 5.10264 5.33626 5.41957 5.46446 5.64378 5.69287 5.77543 5.83781 5.97573 6.05524 6.12399 6.17776 6.25353 6.29364 6.37436 6.41140 6.44057 6.95654 6.98287 7.02696 7.22575 7.32787 7.38011 7.59323 7.71333 7.86898 8.17545 8.32419 8.53252 8.73162 8.83136 9.08335 9.17887 10.39482 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.037313 B = 0.004469 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.227975 B = 6264.315377 C = 6282.283332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.095 4.095 3 H 0.081 0.919 4 C 0.065 3.935 5 N -0.692 5.692 6 C 0.063 3.937 7 C -0.133 4.133 8 C 0.166 3.834 9 H 0.073 0.927 10 N -0.751 5.751 11 C 0.097 3.903 12 C -0.164 4.164 13 C -0.123 4.123 14 C 0.073 3.927 15 C -0.468 4.468 16 H 0.072 0.928 17 C 0.075 3.925 18 N -0.808 5.808 19 Si 0.902 3.098 20 H -0.270 1.270 21 H -0.281 1.281 22 H -0.265 1.265 23 C -0.187 4.187 24 C -0.162 4.162 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.029 0.971 29 H 0.069 0.931 30 H 0.337 0.663 31 H 0.066 0.934 32 H 0.035 0.965 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.379 0.621 36 H 0.089 0.911 37 H 0.117 0.883 38 H 0.276 0.724 39 H 0.090 0.910 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.321 5.127 -12.258 13.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.114 4.114 3 H 0.100 0.900 4 C -0.065 4.065 5 N -0.322 5.322 6 C -0.066 4.066 7 C -0.173 4.173 8 C 0.059 3.941 9 H 0.091 0.909 10 N -0.387 5.387 11 C 0.000 4.000 12 C -0.186 4.186 13 C -0.143 4.143 14 C 0.070 3.930 15 C -0.499 4.499 16 H 0.090 0.910 17 C -0.140 4.140 18 N -0.436 5.436 19 Si 0.728 3.272 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.189 1.189 23 C -0.207 4.207 24 C -0.184 4.184 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.047 0.953 29 H 0.088 0.912 30 H 0.154 0.846 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.213 0.787 36 H 0.107 0.893 37 H 0.135 0.865 38 H 0.086 0.914 39 H 0.108 0.892 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.374 6.081 -11.695 13.606 hybrid contribution -0.204 -1.417 0.257 1.455 sum 3.170 4.664 -11.438 12.753 Atomic orbital electron populations 1.21737 0.94632 1.02356 1.01310 1.21414 0.95656 0.99970 0.94366 0.90037 1.21924 0.87755 0.98608 0.98206 1.60311 1.07999 1.58557 1.05352 1.21830 0.98851 0.95395 0.90562 1.22076 0.97364 1.00703 0.97118 1.20621 0.91867 0.84606 0.97038 0.90865 1.43978 1.74783 1.14193 1.05706 1.17338 1.05022 0.92356 0.85277 1.20114 1.07608 0.98712 0.92153 1.20939 1.01100 0.96335 0.95959 1.17483 0.91050 0.92310 0.92115 1.19370 1.45538 0.94247 0.90771 0.91022 1.25778 0.92588 0.94719 1.00902 1.69855 1.34924 1.09263 1.29530 0.86418 0.79085 0.80420 0.81327 1.19563 1.20598 1.18897 1.20527 1.07750 0.99704 0.92700 1.19780 1.07656 0.94118 0.96834 0.92234 0.92322 0.93218 0.95280 0.91225 0.84564 0.91525 0.94634 0.91588 0.90889 0.78717 0.89320 0.86477 0.91366 0.89224 0.89919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.02 37.16 0.34 -1.36 16 2 C -0.09 -1.16 2.67 -90.54 -0.24 -1.40 16 3 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 4 C 0.06 0.72 5.67 -3.83 -0.02 0.69 16 5 N -0.69 -7.73 6.85 -113.81 -0.78 -8.51 16 6 C 0.06 0.80 6.40 -3.83 -0.02 0.77 16 7 C -0.13 -1.89 5.69 -26.65 -0.15 -2.04 16 8 C 0.17 2.46 1.95 -67.81 -0.13 2.33 16 9 H 0.07 1.22 6.46 -51.93 -0.34 0.88 16 10 N -0.75 -12.66 3.77 -51.91 -0.20 -12.86 16 11 C 0.10 2.08 6.65 -83.69 -0.56 1.52 16 12 C -0.16 -3.80 8.76 -39.77 -0.35 -4.15 16 13 C -0.12 -3.24 8.64 -39.26 -0.34 -3.58 16 14 C 0.07 1.99 5.57 -106.79 -0.60 1.40 16 15 C -0.47 -12.83 9.03 -37.87 -0.34 -13.17 16 16 H 0.07 1.91 7.91 -52.49 -0.41 1.49 16 17 C 0.08 1.95 5.13 -17.34 -0.09 1.87 16 18 N -0.81 -21.62 10.96 55.54 0.61 -21.01 16 19 Si 0.90 19.40 29.60 -169.99 -5.03 14.37 16 20 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 21 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 22 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 23 C -0.19 -4.65 9.74 -39.26 -0.38 -5.03 16 24 C -0.16 -3.63 9.82 -39.77 -0.39 -4.02 16 25 H 0.06 0.77 7.30 -51.93 -0.38 0.39 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.03 0.34 6.64 -51.93 -0.34 -0.01 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.34 3.14 8.90 -39.29 -0.35 2.79 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.04 0.50 7.69 -51.93 -0.40 0.10 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 1.17 7.74 -51.93 -0.40 0.77 16 35 H 0.38 5.96 6.66 -40.82 -0.27 5.69 16 36 H 0.09 1.89 6.10 -52.49 -0.32 1.57 16 37 H 0.12 3.20 6.16 -52.49 -0.32 2.88 16 38 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 39 H 0.09 2.13 8.06 -52.49 -0.42 1.70 16 40 H 0.08 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 312.05 15.07 4.70 4.70 Total: -1.00 -27.59 312.05 -10.03 -37.62 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -6.06 Total: 11.85 kcal Atomic # 6 Polarization: -22.89 SS G_CDS: -3.28 Total: -26.17 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: -0.37 Total: -42.38 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.37 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.59 -10.03 -37.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384051328.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.356 kcal (2) G-P(sol) polarization free energy of solvation -27.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds