Wall clock time and date at job start Mon Mar 30 2020 06:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.50389 * 2 1 4 4 C 1.53043 * 109.50045 * 239.92343 * 2 1 3 5 5 N 1.46850 * 109.51995 * 180.87930 * 4 2 1 6 6 C 1.46848 * 111.19786 * 61.74391 * 5 4 2 7 7 C 1.53037 * 109.52219 * 298.25291 * 6 5 4 8 8 C 1.53114 * 109.50707 * 120.11814 * 2 1 3 9 9 H 1.08997 * 109.52293 * 297.50188 * 8 2 1 10 10 N 1.46510 * 109.52062 * 57.62449 * 8 2 1 11 11 C 1.38857 * 119.99761 * 205.00408 * 10 8 2 12 12 C 1.39568 * 119.84462 * 359.72252 * 11 10 8 13 13 C 1.36342 * 120.16030 * 179.76796 * 12 11 10 14 14 C 1.40882 * 119.83641 * 0.52752 * 13 12 11 15 15 C 1.41135 * 120.15771 * 179.74450 * 14 13 12 16 16 H 1.08002 * 120.00519 * 204.59198 * 15 14 13 17 17 C 1.39867 * 119.99992 * 24.59563 * 15 14 13 18 18 N 1.30901 * 119.99731 * 17.96544 * 17 15 14 19 19 Si 1.86797 * 119.99990 * 197.97035 * 17 15 14 20 20 H 1.48498 * 109.46968 * 90.00190 * 19 17 15 21 21 H 1.48508 * 109.47046 * 209.99504 * 19 17 15 22 22 H 1.48492 * 109.47495 * 329.99686 * 19 17 15 23 23 C 1.40889 * 119.68877 * 359.73084 * 14 13 12 24 24 C 1.36338 * 119.83866 * 359.97438 * 23 14 13 25 25 H 1.08997 * 109.46870 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46841 * 300.07733 * 1 2 3 27 27 H 1.09002 * 109.47365 * 60.07557 * 1 2 3 28 28 H 1.08999 * 109.45959 * 300.88985 * 4 2 1 29 29 H 1.08995 * 109.46375 * 60.86441 * 4 2 1 30 30 H 1.00897 * 110.99934 * 185.83630 * 5 4 2 31 31 H 1.09007 * 109.46008 * 178.24052 * 6 5 4 32 32 H 1.08998 * 109.45668 * 58.26685 * 6 5 4 33 33 H 1.09004 * 109.50591 * 299.24495 * 7 6 5 34 34 H 1.08997 * 109.53640 * 179.14527 * 7 6 5 35 35 H 0.96991 * 119.99664 * 25.00382 * 10 8 2 36 36 H 1.08002 * 119.91965 * 359.97438 * 12 11 10 37 37 H 1.08001 * 120.08066 * 180.23822 * 13 12 11 38 38 H 0.97000 * 120.00426 * 179.97438 * 18 17 15 39 39 H 1.08001 * 120.08091 * 179.97438 * 23 14 13 40 40 H 1.07994 * 119.92473 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0409 -0.7230 -1.2484 5 7 3.5093 -0.7416 -1.2382 6 6 4.0229 -1.4730 -0.0730 7 6 3.5713 -0.7724 1.2104 8 6 2.0413 -0.7242 1.2484 9 1 1.7158 -0.1878 2.1396 10 7 1.5078 -2.0884 1.2759 11 6 1.3772 -2.7585 2.4851 12 6 1.7605 -2.1315 3.6716 13 6 1.6306 -2.7817 4.8629 14 6 1.1184 -4.0937 4.8932 15 6 0.9861 -4.7751 6.1221 16 1 0.9845 -5.8549 6.1435 17 6 0.8569 -4.0519 7.3123 18 7 0.5081 -2.7908 7.2772 19 14 1.1824 -4.8858 8.9518 20 1 2.6164 -4.7360 9.3073 21 1 0.3435 -4.2556 10.0028 22 1 0.8460 -6.3284 8.8489 23 6 0.7385 -4.7224 3.6909 24 6 0.8683 -4.0580 2.5075 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5150 0.8893 27 1 -0.3634 0.5127 -0.8907 28 1 1.6648 -1.7460 -1.2550 29 1 1.6905 -0.2015 -2.1390 30 1 3.8719 -1.1286 -2.0966 31 1 5.1121 -1.4962 -0.1101 32 1 3.6373 -2.4924 -0.0854 33 1 3.9678 0.2428 1.2298 34 1 3.9397 -1.3236 2.0755 35 1 1.2459 -2.5234 0.4496 36 1 2.1579 -1.1276 3.6463 37 1 1.9241 -2.2938 5.7807 38 1 0.4181 -2.2892 8.1026 39 1 0.3455 -5.7283 3.7067 40 1 0.5772 -4.5384 1.5852 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384051328.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:35 Heat of formation + Delta-G solvation = -0.599272 kcal Electronic energy + Delta-G solvation = -19604.204839 eV Core-core repulsion = 16802.961365 eV Total energy + Delta-G solvation = -2801.243474 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.74248 -39.11534 -36.14135 -34.73620 -33.58313 -31.93446 -31.27620 -29.88449 -27.34700 -26.15918 -24.64454 -23.07848 -22.51226 -22.17957 -19.68675 -19.14991 -18.13101 -17.20306 -16.80810 -16.40914 -15.79920 -15.62359 -15.35004 -14.97592 -14.68942 -14.43750 -14.06311 -13.85429 -13.66311 -13.36360 -13.24144 -12.89953 -12.78435 -12.74850 -12.64327 -12.30075 -12.24412 -11.81283 -11.61998 -11.55031 -11.18395 -11.10213 -10.98519 -10.26709 -9.39204 -9.37014 -8.54511 -8.12925 -5.99724 1.11592 1.19372 1.39608 1.52095 1.59443 2.27309 2.84789 2.90154 3.32115 3.73329 3.84237 3.97265 4.05354 4.23344 4.43496 4.44580 4.49550 4.52713 4.59488 4.73504 4.86785 4.91332 4.98319 5.02033 5.04807 5.12210 5.17876 5.23855 5.28773 5.31028 5.43048 5.46715 5.71753 5.82228 5.97560 6.06370 6.19666 6.40514 6.53175 6.68945 6.89696 7.09217 7.15717 7.32835 8.48797 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.037313 B = 0.004469 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.227975 B = 6264.315377 C = 6282.283332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.087 4.087 3 H 0.090 0.910 4 C 0.066 3.934 5 N -0.689 5.689 6 C 0.068 3.932 7 C -0.130 4.130 8 C 0.161 3.839 9 H 0.054 0.946 10 N -0.736 5.736 11 C 0.121 3.879 12 C -0.172 4.172 13 C -0.142 4.142 14 C 0.034 3.966 15 C -0.507 4.507 16 H 0.066 0.934 17 C 0.033 3.967 18 N -0.843 5.843 19 Si 0.976 3.024 20 H -0.265 1.265 21 H -0.270 1.270 22 H -0.261 1.261 23 C -0.195 4.195 24 C -0.169 4.169 25 H 0.047 0.953 26 H 0.045 0.955 27 H 0.073 0.927 28 H 0.026 0.974 29 H 0.092 0.908 30 H 0.352 0.648 31 H 0.077 0.923 32 H 0.022 0.978 33 H 0.076 0.924 34 H 0.048 0.952 35 H 0.390 0.610 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.282 0.718 39 H 0.094 0.906 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.620 5.700 -14.284 15.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.106 4.106 3 H 0.108 0.892 4 C -0.063 4.063 5 N -0.321 5.321 6 C -0.061 4.061 7 C -0.170 4.170 8 C 0.054 3.946 9 H 0.072 0.928 10 N -0.371 5.371 11 C 0.022 3.978 12 C -0.194 4.194 13 C -0.162 4.162 14 C 0.031 3.969 15 C -0.539 4.539 16 H 0.084 0.916 17 C -0.179 4.179 18 N -0.471 5.471 19 Si 0.797 3.203 20 H -0.190 1.190 21 H -0.195 1.195 22 H -0.185 1.185 23 C -0.215 4.215 24 C -0.191 4.191 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.092 0.908 28 H 0.044 0.956 29 H 0.111 0.889 30 H 0.171 0.829 31 H 0.096 0.904 32 H 0.040 0.960 33 H 0.095 0.905 34 H 0.067 0.933 35 H 0.226 0.774 36 H 0.120 0.880 37 H 0.115 0.885 38 H 0.092 0.908 39 H 0.112 0.888 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.681 6.670 -13.784 15.749 hybrid contribution -0.288 -1.497 0.675 1.667 sum 3.393 5.173 -13.109 14.495 Atomic orbital electron populations 1.21708 0.94289 1.01781 1.01967 1.21361 0.95853 1.00054 0.93375 0.89213 1.21943 0.87609 0.98512 0.98265 1.60274 1.08120 1.58219 1.05464 1.21722 0.99561 0.94427 0.90403 1.22005 0.96528 1.01218 0.97228 1.20779 0.92493 0.83297 0.97986 0.92839 1.43967 1.73809 1.14813 1.04509 1.17403 1.02100 0.92009 0.86318 1.20225 1.07874 0.99335 0.91978 1.20858 1.02438 0.96590 0.96330 1.17796 0.92786 0.93198 0.93125 1.19589 1.47923 0.94206 0.92139 0.91569 1.26588 0.91751 0.95317 1.04251 1.69921 1.35776 1.10643 1.30753 0.85307 0.79085 0.79290 0.76580 1.18974 1.19521 1.18501 1.20728 1.07600 1.00121 0.93076 1.20055 1.07380 0.94458 0.97206 0.93347 0.93552 0.90774 0.95582 0.88948 0.82912 0.90414 0.96018 0.90497 0.93325 0.77434 0.87956 0.88521 0.90814 0.88770 0.86879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.02 71.98 0.65 -2.32 16 2 C -0.09 -1.88 2.67 -10.74 -0.03 -1.91 16 3 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 4 C 0.07 1.22 5.67 86.33 0.49 1.71 16 5 N -0.69 -13.02 6.85 -513.99 -3.52 -16.53 16 6 C 0.07 1.57 6.40 86.33 0.55 2.12 16 7 C -0.13 -3.50 5.69 30.65 0.17 -3.33 16 8 C 0.16 4.53 1.95 45.07 0.09 4.61 16 9 H 0.05 1.74 6.46 -2.39 -0.02 1.73 16 10 N -0.74 -23.59 3.77 -318.15 -1.20 -24.79 16 11 C 0.12 5.11 6.65 38.67 0.26 5.37 16 12 C -0.17 -8.10 8.76 22.15 0.19 -7.91 16 13 C -0.14 -7.76 8.64 22.47 0.19 -7.57 16 14 C 0.03 1.91 5.57 -21.27 -0.12 1.79 16 15 C -0.51 -28.96 9.03 23.38 0.21 -28.75 16 16 H 0.07 3.68 7.91 -2.91 -0.02 3.66 16 17 C 0.03 1.75 5.13 85.23 0.44 2.18 16 18 N -0.84 -46.71 10.96 21.82 0.24 -46.47 16 19 Si 0.98 40.72 29.60 68.60 2.03 42.75 16 20 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 21 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 22 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 23 C -0.20 -9.89 9.74 22.48 0.22 -9.67 16 24 C -0.17 -7.43 9.82 22.15 0.22 -7.21 16 25 H 0.05 1.13 7.30 -2.39 -0.02 1.11 16 26 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.03 0.51 6.64 -2.39 -0.02 0.49 16 29 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.35 5.22 8.90 -89.70 -0.80 4.43 16 31 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.02 0.56 7.69 -2.39 -0.02 0.54 16 33 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.05 1.54 7.74 -2.39 -0.02 1.52 16 35 H 0.39 11.23 6.66 -92.71 -0.62 10.62 16 36 H 0.10 4.44 6.10 -2.91 -0.02 4.42 16 37 H 0.10 5.59 6.16 -2.91 -0.02 5.57 16 38 H 0.28 14.21 8.30 -92.71 -0.77 13.44 16 39 H 0.09 4.55 8.06 -2.91 -0.02 4.53 16 40 H 0.11 4.25 8.06 -2.91 -0.02 4.23 16 Total: -1.00 -61.32 312.05 0.72 -60.60 By element: Atomic # 1 Polarization: 35.70 SS G_CDS: -0.37 Total: 35.33 kcal Atomic # 6 Polarization: -54.43 SS G_CDS: 3.54 Total: -50.89 kcal Atomic # 7 Polarization: -83.31 SS G_CDS: -4.48 Total: -87.79 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.75 kcal Total: -61.32 0.72 -60.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384051328.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.004 kcal (2) G-P(sol) polarization free energy of solvation -61.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds