Wall clock time and date at job start Mon Mar 30 2020 06:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.50726 * 2 1 4 4 C 1.53034 * 109.50538 * 120.11608 * 2 1 3 5 5 N 1.46844 * 109.52857 * 179.12192 * 4 2 1 6 6 C 1.46849 * 111.19438 * 298.26005 * 5 4 2 7 7 C 1.53042 * 109.52594 * 61.74241 * 6 5 4 8 8 C 1.53117 * 109.50505 * 239.92000 * 2 1 3 9 9 H 1.09000 * 109.52383 * 62.50092 * 8 2 1 10 10 N 1.46495 * 109.52496 * 302.31070 * 8 2 1 11 11 C 1.38860 * 120.00300 * 154.99593 * 10 8 2 12 12 C 1.39557 * 119.84148 * 359.72798 * 11 10 8 13 13 C 1.36345 * 120.16336 * 179.75479 * 12 11 10 14 14 C 1.40890 * 119.82885 * 0.54197 * 13 12 11 15 15 C 1.41139 * 120.15213 * 179.73776 * 14 13 12 16 16 H 1.07995 * 120.00485 * 204.58567 * 15 14 13 17 17 C 1.39872 * 119.99808 * 24.58914 * 15 14 13 18 18 N 1.30895 * 120.00115 * 17.96512 * 17 15 14 19 19 Si 1.86798 * 119.99731 * 197.97009 * 17 15 14 20 20 H 1.48501 * 109.47455 * 59.99613 * 19 17 15 21 21 H 1.48495 * 109.47385 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.46926 * 299.99834 * 19 17 15 23 23 C 1.40876 * 119.69321 * 359.71273 * 14 13 12 24 24 C 1.36339 * 119.83776 * 0.02562 * 23 14 13 25 25 H 1.08995 * 109.47357 * 180.08184 * 1 2 3 26 26 H 1.09006 * 109.47171 * 300.08381 * 1 2 3 27 27 H 1.09009 * 109.47243 * 60.07735 * 1 2 3 28 28 H 1.09000 * 109.46030 * 299.13678 * 4 2 1 29 29 H 1.08999 * 109.46288 * 59.10080 * 4 2 1 30 30 H 1.00896 * 111.00359 * 174.16126 * 5 4 2 31 31 H 1.09003 * 109.46372 * 181.75395 * 6 5 4 32 32 H 1.08999 * 109.46530 * 301.73220 * 6 5 4 33 33 H 1.08993 * 109.50455 * 180.88024 * 7 6 5 34 34 H 1.08998 * 109.50615 * 60.75843 * 7 6 5 35 35 H 0.97003 * 119.99687 * 335.00189 * 10 8 2 36 36 H 1.08001 * 119.92197 * 359.97438 * 12 11 10 37 37 H 1.07998 * 120.08521 * 180.23347 * 13 12 11 38 38 H 0.97005 * 120.00091 * 180.02562 * 18 17 15 39 39 H 1.07999 * 120.08252 * 180.02562 * 23 14 13 40 40 H 1.07996 * 119.92548 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0409 -0.7238 1.2478 5 7 3.5092 -0.7425 1.2377 6 6 4.0229 -1.4730 0.0720 7 6 3.5712 -0.7715 -1.2110 8 6 2.0412 -0.7234 -1.2489 9 1 1.7157 -0.1863 -2.1398 10 7 1.5090 -2.0880 -1.2766 11 6 1.3783 -2.7579 -2.4859 12 6 1.7496 -2.1260 -3.6735 13 6 1.6287 -2.7794 -4.8641 14 6 1.1168 -4.0916 -4.8944 15 6 0.9835 -4.7724 -6.1236 16 1 0.2615 -5.5691 -6.2242 17 6 1.7868 -4.4151 -7.2115 18 7 2.8789 -3.7199 -7.0183 19 14 1.3008 -4.9299 -8.9401 20 1 -0.0284 -4.3570 -9.2721 21 1 2.3103 -4.4302 -9.9077 22 1 1.2338 -6.4116 -9.0149 23 6 0.7390 -4.7213 -3.6922 24 6 0.8704 -4.0577 -2.5085 25 1 -0.3634 -1.0276 0.0015 26 1 -0.3634 0.5152 0.8893 27 1 -0.3634 0.5127 -0.8907 28 1 1.6905 -0.2029 2.1388 29 1 1.6647 -1.7468 1.2539 30 1 3.8718 -1.1299 2.0958 31 1 5.1120 -1.4962 0.1089 32 1 3.6373 -2.4924 0.0834 33 1 3.9394 -1.3227 -2.0762 34 1 3.9677 0.2436 -1.2298 35 1 1.2478 -2.5236 -0.4502 36 1 2.1370 -1.1181 -3.6492 37 1 1.9200 -2.2905 -5.7820 38 1 3.4358 -3.4719 -7.7729 39 1 0.3462 -5.7272 -3.7081 40 1 0.5808 -4.5389 -1.5860 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384051330.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:39 Heat of formation + Delta-G solvation = 15.844328 kcal Electronic energy + Delta-G solvation = -19613.141359 eV Core-core repulsion = 16812.610933 eV Total energy + Delta-G solvation = -2800.530426 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.47724 -37.41816 -34.55385 -33.23793 -32.31410 -30.53108 -29.40234 -28.15159 -26.27229 -24.38975 -23.45159 -21.75941 -20.94089 -20.46440 -18.39321 -17.18996 -16.70443 -16.04316 -15.01008 -14.99381 -14.71272 -14.19530 -13.84718 -13.81016 -13.18244 -12.85145 -12.58547 -12.39242 -12.00526 -11.88164 -11.78799 -11.63501 -11.51139 -11.15230 -10.99481 -10.87858 -10.74617 -10.56839 -10.28866 -10.04656 -9.67995 -9.25186 -9.18978 -8.55564 -8.37059 -7.46725 -6.62066 -6.34934 -4.00718 2.95019 3.12152 3.15348 3.18594 3.38343 4.06929 4.17848 4.40081 4.76741 4.78044 4.98040 5.10949 5.35367 5.42680 5.47101 5.65148 5.69247 5.77145 5.84213 5.97658 6.05629 6.13704 6.18262 6.24926 6.29587 6.38583 6.40984 6.45611 6.95819 6.98579 7.04342 7.22530 7.34250 7.38080 7.59472 7.71388 7.86962 8.17363 8.32556 8.53404 8.73179 8.83095 9.08348 9.17983 10.39541 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.036995 B = 0.004555 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.667742 B = 6146.212675 C = 6337.004782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.095 4.095 3 H 0.081 0.919 4 C 0.065 3.935 5 N -0.692 5.692 6 C 0.063 3.937 7 C -0.134 4.134 8 C 0.166 3.834 9 H 0.073 0.927 10 N -0.752 5.752 11 C 0.097 3.903 12 C -0.164 4.164 13 C -0.123 4.123 14 C 0.074 3.926 15 C -0.469 4.469 16 H 0.071 0.929 17 C 0.075 3.925 18 N -0.808 5.808 19 Si 0.902 3.098 20 H -0.266 1.266 21 H -0.281 1.281 22 H -0.268 1.268 23 C -0.187 4.187 24 C -0.162 4.162 25 H 0.059 0.941 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.029 0.971 30 H 0.337 0.663 31 H 0.067 0.933 32 H 0.036 0.964 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.379 0.621 36 H 0.089 0.911 37 H 0.117 0.883 38 H 0.276 0.724 39 H 0.089 0.911 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.081 6.462 11.862 13.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.114 4.114 3 H 0.100 0.900 4 C -0.065 4.065 5 N -0.322 5.322 6 C -0.066 4.066 7 C -0.173 4.173 8 C 0.059 3.941 9 H 0.091 0.909 10 N -0.387 5.387 11 C 0.000 4.000 12 C -0.186 4.186 13 C -0.143 4.143 14 C 0.071 3.929 15 C -0.500 4.500 16 H 0.089 0.911 17 C -0.140 4.140 18 N -0.436 5.436 19 Si 0.727 3.273 20 H -0.191 1.191 21 H -0.206 1.206 22 H -0.193 1.193 23 C -0.207 4.207 24 C -0.184 4.184 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.047 0.953 30 H 0.154 0.846 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.213 0.787 36 H 0.107 0.893 37 H 0.135 0.865 38 H 0.087 0.913 39 H 0.108 0.892 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.245 7.316 11.327 13.486 hybrid contribution -0.310 -1.392 -0.268 1.451 sum -0.065 5.924 11.059 12.546 Atomic orbital electron populations 1.21734 0.94674 1.02315 1.01269 1.21412 0.95609 0.99981 0.94412 0.90039 1.21917 0.87818 0.98586 0.98170 1.60311 1.07952 1.58593 1.05365 1.21831 0.98908 0.95399 0.90507 1.22081 0.97318 1.00709 0.97214 1.20618 0.91937 0.84578 0.96945 0.90916 1.43980 1.74878 1.14119 1.05707 1.17334 1.04730 0.92622 0.85316 1.20110 1.07552 0.98691 0.92232 1.20939 1.02551 0.94661 0.96183 1.17477 0.91907 0.91513 0.92017 1.19330 1.18507 1.17165 0.94976 0.91070 1.25775 0.93518 0.93834 1.00833 1.69845 1.09626 1.31203 1.32895 0.86480 0.79271 0.79695 0.81832 1.19111 1.20592 1.19300 1.20523 1.09510 0.98476 0.92206 1.19780 1.07615 0.94159 0.96824 0.92239 0.93217 0.92385 0.91245 0.95293 0.84563 0.91489 0.94623 0.90770 0.91607 0.78715 0.89326 0.86478 0.91308 0.89229 0.89923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.01 37.15 0.33 -1.31 16 2 C -0.09 -1.15 2.67 -90.55 -0.24 -1.39 16 3 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 4 C 0.06 0.72 5.67 -3.84 -0.02 0.70 16 5 N -0.69 -7.89 6.85 -113.82 -0.78 -8.67 16 6 C 0.06 0.82 6.40 -3.83 -0.02 0.80 16 7 C -0.13 -1.95 5.71 -26.65 -0.15 -2.11 16 8 C 0.17 2.47 1.96 -67.81 -0.13 2.34 16 9 H 0.07 1.19 6.43 -51.93 -0.33 0.86 16 10 N -0.75 -12.67 3.76 -51.92 -0.20 -12.86 16 11 C 0.10 2.07 6.65 -83.69 -0.56 1.52 16 12 C -0.16 -3.80 8.80 -39.77 -0.35 -4.15 16 13 C -0.12 -3.24 8.64 -39.26 -0.34 -3.58 16 14 C 0.07 2.00 5.57 -106.80 -0.60 1.41 16 15 C -0.47 -12.84 9.03 -37.87 -0.34 -13.18 16 16 H 0.07 1.89 7.91 -52.49 -0.41 1.47 16 17 C 0.08 1.96 5.13 -17.34 -0.09 1.87 16 18 N -0.81 -21.60 10.96 55.54 0.61 -20.99 16 19 Si 0.90 19.39 29.60 -169.99 -5.03 14.36 16 20 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 21 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 23 C -0.19 -4.66 9.74 -39.27 -0.38 -5.04 16 24 C -0.16 -3.63 9.82 -39.77 -0.39 -4.02 16 25 H 0.06 0.75 7.30 -51.93 -0.38 0.37 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.03 0.34 6.64 -51.93 -0.34 -0.01 16 30 H 0.34 3.22 8.90 -39.29 -0.35 2.87 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.04 0.52 7.68 -51.93 -0.40 0.12 16 33 H 0.07 1.26 7.83 -51.93 -0.41 0.85 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.38 5.96 6.66 -40.82 -0.27 5.69 16 36 H 0.09 1.89 6.17 -52.49 -0.32 1.57 16 37 H 0.12 3.20 6.16 -52.49 -0.32 2.88 16 38 H 0.28 6.78 8.30 -40.82 -0.34 6.45 16 39 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 40 H 0.08 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 312.24 15.07 4.71 4.71 Total: -1.00 -27.55 312.24 -10.04 -37.58 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -6.06 Total: 12.02 kcal Atomic # 6 Polarization: -22.85 SS G_CDS: -3.28 Total: -26.14 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: -0.37 Total: -42.52 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.03 Total: 14.36 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.55 -10.04 -37.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384051330.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.428 kcal (2) G-P(sol) polarization free energy of solvation -27.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds