Wall clock time and date at job start Mon Mar 30 2020 06:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.50726 * 2 1 4 4 C 1.53034 * 109.50538 * 120.11608 * 2 1 3 5 5 N 1.46844 * 109.52857 * 179.12192 * 4 2 1 6 6 C 1.46849 * 111.19438 * 298.26005 * 5 4 2 7 7 C 1.53042 * 109.52594 * 61.74241 * 6 5 4 8 8 C 1.53117 * 109.50505 * 239.92000 * 2 1 3 9 9 H 1.09000 * 109.52383 * 62.50092 * 8 2 1 10 10 N 1.46495 * 109.52496 * 302.31070 * 8 2 1 11 11 C 1.38860 * 120.00300 * 154.99593 * 10 8 2 12 12 C 1.39557 * 119.84148 * 359.72798 * 11 10 8 13 13 C 1.36345 * 120.16336 * 179.75479 * 12 11 10 14 14 C 1.40890 * 119.82885 * 0.54197 * 13 12 11 15 15 C 1.41139 * 120.15213 * 179.73776 * 14 13 12 16 16 H 1.07995 * 120.00485 * 204.58567 * 15 14 13 17 17 C 1.39872 * 119.99808 * 24.58914 * 15 14 13 18 18 N 1.30895 * 120.00115 * 17.96512 * 17 15 14 19 19 Si 1.86798 * 119.99731 * 197.97009 * 17 15 14 20 20 H 1.48501 * 109.47455 * 59.99613 * 19 17 15 21 21 H 1.48495 * 109.47385 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.46926 * 299.99834 * 19 17 15 23 23 C 1.40876 * 119.69321 * 359.71273 * 14 13 12 24 24 C 1.36339 * 119.83776 * 0.02562 * 23 14 13 25 25 H 1.08995 * 109.47357 * 180.08184 * 1 2 3 26 26 H 1.09006 * 109.47171 * 300.08381 * 1 2 3 27 27 H 1.09009 * 109.47243 * 60.07735 * 1 2 3 28 28 H 1.09000 * 109.46030 * 299.13678 * 4 2 1 29 29 H 1.08999 * 109.46288 * 59.10080 * 4 2 1 30 30 H 1.00896 * 111.00359 * 174.16126 * 5 4 2 31 31 H 1.09003 * 109.46372 * 181.75395 * 6 5 4 32 32 H 1.08999 * 109.46530 * 301.73220 * 6 5 4 33 33 H 1.08993 * 109.50455 * 180.88024 * 7 6 5 34 34 H 1.08998 * 109.50615 * 60.75843 * 7 6 5 35 35 H 0.97003 * 119.99687 * 335.00189 * 10 8 2 36 36 H 1.08001 * 119.92197 * 359.97438 * 12 11 10 37 37 H 1.07998 * 120.08521 * 180.23347 * 13 12 11 38 38 H 0.97005 * 120.00091 * 180.02562 * 18 17 15 39 39 H 1.07999 * 120.08252 * 180.02562 * 23 14 13 40 40 H 1.07996 * 119.92548 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0409 -0.7238 1.2478 5 7 3.5092 -0.7425 1.2377 6 6 4.0229 -1.4730 0.0720 7 6 3.5712 -0.7715 -1.2110 8 6 2.0412 -0.7234 -1.2489 9 1 1.7157 -0.1863 -2.1398 10 7 1.5090 -2.0880 -1.2766 11 6 1.3783 -2.7579 -2.4859 12 6 1.7496 -2.1260 -3.6735 13 6 1.6287 -2.7794 -4.8641 14 6 1.1168 -4.0916 -4.8944 15 6 0.9835 -4.7724 -6.1236 16 1 0.2615 -5.5691 -6.2242 17 6 1.7868 -4.4151 -7.2115 18 7 2.8789 -3.7199 -7.0183 19 14 1.3008 -4.9299 -8.9401 20 1 -0.0284 -4.3570 -9.2721 21 1 2.3103 -4.4302 -9.9077 22 1 1.2338 -6.4116 -9.0149 23 6 0.7390 -4.7213 -3.6922 24 6 0.8704 -4.0577 -2.5085 25 1 -0.3634 -1.0276 0.0015 26 1 -0.3634 0.5152 0.8893 27 1 -0.3634 0.5127 -0.8907 28 1 1.6905 -0.2029 2.1388 29 1 1.6647 -1.7468 1.2539 30 1 3.8718 -1.1299 2.0958 31 1 5.1120 -1.4962 0.1089 32 1 3.6373 -2.4924 0.0834 33 1 3.9394 -1.3227 -2.0762 34 1 3.9677 0.2436 -1.2298 35 1 1.2478 -2.5236 -0.4502 36 1 2.1370 -1.1181 -3.6492 37 1 1.9200 -2.2905 -5.7820 38 1 3.4358 -3.4719 -7.7729 39 1 0.3462 -5.7272 -3.7081 40 1 0.5808 -4.5389 -1.5860 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384051330.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:39 Heat of formation + Delta-G solvation = -0.455443 kcal Electronic energy + Delta-G solvation = -19613.848170 eV Core-core repulsion = 16812.610933 eV Total energy + Delta-G solvation = -2801.237237 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.74419 -39.11611 -36.14183 -34.73734 -33.58119 -31.93561 -31.27734 -29.88330 -27.34160 -26.15658 -24.64922 -23.07621 -22.51802 -22.17693 -19.68540 -19.14794 -18.12963 -17.20867 -16.80621 -16.41135 -15.80830 -15.62094 -15.34968 -14.97542 -14.68897 -14.44051 -14.05208 -13.84920 -13.60397 -13.46091 -13.23142 -12.89212 -12.76009 -12.73210 -12.60994 -12.32801 -12.26090 -11.82995 -11.64471 -11.51233 -11.19026 -11.08866 -11.00702 -10.25266 -9.39124 -9.37635 -8.54371 -8.13133 -5.99399 1.12473 1.19735 1.39588 1.50461 1.60446 2.27357 2.84765 2.90541 3.31497 3.73380 3.84433 3.97101 4.05684 4.22704 4.43441 4.44480 4.49335 4.52590 4.59007 4.74365 4.87145 4.91338 4.98150 5.01994 5.04821 5.12010 5.17926 5.24201 5.28494 5.31254 5.43971 5.46741 5.71842 5.82330 5.97602 6.05708 6.19588 6.40630 6.52363 6.68978 6.89743 7.09267 7.15827 7.32894 8.48785 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.036995 B = 0.004555 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.667742 B = 6146.212675 C = 6337.004782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.087 4.087 3 H 0.090 0.910 4 C 0.065 3.935 5 N -0.688 5.688 6 C 0.068 3.932 7 C -0.131 4.131 8 C 0.161 3.839 9 H 0.056 0.944 10 N -0.737 5.737 11 C 0.121 3.879 12 C -0.172 4.172 13 C -0.142 4.142 14 C 0.034 3.966 15 C -0.508 4.508 16 H 0.067 0.933 17 C 0.033 3.967 18 N -0.842 5.842 19 Si 0.975 3.025 20 H -0.263 1.263 21 H -0.270 1.270 22 H -0.262 1.262 23 C -0.196 4.196 24 C -0.169 4.169 25 H 0.048 0.952 26 H 0.073 0.927 27 H 0.048 0.952 28 H 0.093 0.907 29 H 0.026 0.974 30 H 0.352 0.648 31 H 0.075 0.925 32 H 0.020 0.980 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.390 0.610 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.282 0.718 39 H 0.094 0.906 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.307 7.242 13.844 15.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.106 4.106 3 H 0.108 0.892 4 C -0.064 4.064 5 N -0.320 5.320 6 C -0.061 4.061 7 C -0.171 4.171 8 C 0.055 3.945 9 H 0.075 0.925 10 N -0.371 5.371 11 C 0.021 3.979 12 C -0.194 4.194 13 C -0.162 4.162 14 C 0.031 3.969 15 C -0.539 4.539 16 H 0.085 0.915 17 C -0.179 4.179 18 N -0.471 5.471 19 Si 0.797 3.203 20 H -0.188 1.188 21 H -0.194 1.194 22 H -0.186 1.186 23 C -0.216 4.216 24 C -0.191 4.191 25 H 0.067 0.933 26 H 0.092 0.908 27 H 0.067 0.933 28 H 0.111 0.889 29 H 0.044 0.956 30 H 0.171 0.829 31 H 0.094 0.906 32 H 0.039 0.961 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.226 0.774 36 H 0.120 0.880 37 H 0.115 0.885 38 H 0.092 0.908 39 H 0.112 0.888 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.023 8.112 13.371 15.639 hybrid contribution -0.222 -1.541 -0.671 1.695 sum -0.199 6.571 12.701 14.301 Atomic orbital electron populations 1.21704 0.94069 1.01839 1.02055 1.21360 0.96018 1.00008 0.93221 0.89188 1.21956 0.87516 0.98538 0.98390 1.60273 1.08230 1.58162 1.05360 1.21711 0.99491 0.94409 0.90502 1.22009 0.96872 1.01134 0.97060 1.20779 0.92237 0.83328 0.98138 0.92549 1.43968 1.73874 1.14756 1.04510 1.17400 1.01830 0.92261 0.86359 1.20221 1.07773 0.99350 0.92060 1.20860 1.03911 0.94886 0.96572 1.17792 0.93750 0.92287 0.93040 1.19565 1.19648 1.18289 0.96447 0.91526 1.26587 0.92979 0.93681 1.04644 1.69914 1.10518 1.32397 1.34233 0.85368 0.78985 0.79447 0.76527 1.18794 1.19446 1.18650 1.20724 1.09332 0.98928 0.92584 1.20056 1.07335 0.94518 0.97187 0.93283 0.90797 0.93329 0.88868 0.95599 0.82936 0.90613 0.96140 0.93725 0.90470 0.77434 0.87959 0.88511 0.90805 0.88766 0.86886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.01 71.98 0.65 -2.16 16 2 C -0.09 -1.85 2.67 -10.75 -0.03 -1.87 16 3 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 4 C 0.07 1.21 5.67 86.33 0.49 1.70 16 5 N -0.69 -13.39 6.85 -514.01 -3.52 -16.91 16 6 C 0.07 1.65 6.40 86.33 0.55 2.20 16 7 C -0.13 -3.67 5.71 30.65 0.18 -3.49 16 8 C 0.16 4.54 1.96 45.07 0.09 4.63 16 9 H 0.06 1.80 6.43 -2.39 -0.02 1.78 16 10 N -0.74 -23.59 3.76 -318.17 -1.20 -24.79 16 11 C 0.12 5.10 6.65 38.67 0.26 5.36 16 12 C -0.17 -8.10 8.80 22.15 0.19 -7.91 16 13 C -0.14 -7.77 8.64 22.48 0.19 -7.58 16 14 C 0.03 1.93 5.57 -21.27 -0.12 1.81 16 15 C -0.51 -29.01 9.03 23.38 0.21 -28.80 16 16 H 0.07 3.69 7.91 -2.91 -0.02 3.66 16 17 C 0.03 1.76 5.13 85.23 0.44 2.20 16 18 N -0.84 -46.70 10.96 21.82 0.24 -46.46 16 19 Si 0.98 40.67 29.60 68.60 2.03 42.70 16 20 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 21 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 22 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 23 C -0.20 -9.92 9.74 22.47 0.22 -9.70 16 24 C -0.17 -7.43 9.82 22.15 0.22 -7.22 16 25 H 0.05 1.09 7.30 -2.39 -0.02 1.08 16 26 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 27 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 28 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.03 0.51 6.64 -2.39 -0.02 0.49 16 30 H 0.35 5.43 8.90 -89.70 -0.80 4.64 16 31 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.02 0.55 7.68 -2.39 -0.02 0.54 16 33 H 0.04 1.51 7.83 -2.39 -0.02 1.49 16 34 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.39 11.23 6.66 -92.71 -0.62 10.62 16 36 H 0.10 4.44 6.17 -2.91 -0.02 4.42 16 37 H 0.10 5.60 6.16 -2.91 -0.02 5.58 16 38 H 0.28 14.26 8.30 -92.70 -0.77 13.49 16 39 H 0.09 4.55 8.06 -2.91 -0.02 4.53 16 40 H 0.11 4.25 8.06 -2.91 -0.02 4.23 16 Total: -1.00 -61.32 312.24 0.72 -60.60 By element: Atomic # 1 Polarization: 36.07 SS G_CDS: -0.37 Total: 35.70 kcal Atomic # 6 Polarization: -54.37 SS G_CDS: 3.54 Total: -50.83 kcal Atomic # 7 Polarization: -83.68 SS G_CDS: -4.48 Total: -88.16 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Total: -61.32 0.72 -60.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384051330.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.141 kcal (2) G-P(sol) polarization free energy of solvation -61.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds