Wall clock time and date at job start Mon Mar 30 2020 06:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50699 * 120.00253 * 2 1 4 4 C 1.50706 * 120.00125 * 179.97438 * 2 1 3 5 5 N 1.46506 * 109.46694 * 95.00317 * 4 2 1 6 6 C 1.46501 * 119.99878 * 270.00301 * 5 4 2 7 7 C 1.53002 * 109.46841 * 270.00149 * 6 5 4 8 8 C 1.39848 * 119.99610 * 90.00385 * 5 4 2 9 9 C 1.39605 * 119.84475 * 0.25113 * 8 5 4 10 10 C 1.38058 * 120.54745 * 180.30511 * 9 8 5 11 11 C 1.38730 * 120.22346 * 359.44029 * 10 9 8 12 12 N 1.38868 * 120.16583 * 180.25451 * 11 10 9 13 13 C 1.41559 * 119.67387 * 0.28068 * 11 10 9 14 14 C 1.41027 * 120.27119 * 180.02562 * 13 11 10 15 15 H 1.08007 * 119.99697 * 330.45131 * 14 13 11 16 16 C 1.39888 * 120.00293 * 150.44473 * 14 13 11 17 17 N 1.30896 * 119.99747 * 162.54662 * 16 14 13 18 18 Si 1.86797 * 119.99938 * 342.54689 * 16 14 13 19 19 H 1.48504 * 109.46823 * 90.67777 * 18 16 14 20 20 H 1.48494 * 109.46999 * 210.67306 * 18 16 14 21 21 H 1.48494 * 109.47064 * 330.67766 * 18 16 14 22 22 C 1.38010 * 119.83884 * 179.97438 * 8 5 4 23 23 H 1.07998 * 119.99413 * 0.02562 * 1 2 3 24 24 H 1.07996 * 119.99912 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47232 * 239.99406 * 3 2 1 26 26 H 1.09001 * 109.47151 * 359.97438 * 3 2 1 27 27 H 1.09003 * 109.47520 * 119.99674 * 3 2 1 28 28 H 1.08998 * 109.46725 * 335.01192 * 4 2 1 29 29 H 1.08999 * 109.47647 * 215.00250 * 4 2 1 30 30 H 1.08998 * 109.47046 * 30.00502 * 6 5 4 31 31 H 1.08996 * 109.46779 * 150.00323 * 6 5 4 32 32 H 1.09001 * 109.46903 * 180.02562 * 7 6 5 33 33 H 1.08996 * 109.47017 * 299.99533 * 7 6 5 34 34 H 1.08996 * 109.47292 * 60.00488 * 7 6 5 35 35 H 1.08000 * 119.72027 * 0.03961 * 9 8 5 36 36 H 1.08005 * 119.88312 * 179.71896 * 10 9 8 37 37 H 0.97005 * 119.99393 * 353.99751 * 12 11 10 38 38 H 0.96999 * 120.00055 * 173.99089 * 12 11 10 39 39 H 0.97003 * 120.00170 * 180.02562 * 17 16 14 40 40 H 1.08008 * 120.11326 * 0.02562 * 22 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 7 2.4120 -1.6683 -1.3753 6 6 1.4916 -2.4819 -2.1736 7 6 1.8149 -3.9637 -1.9720 8 6 3.6232 -1.2384 -1.9265 9 6 4.5001 -0.4677 -1.1610 10 6 5.6968 -0.0302 -1.6927 11 6 6.0462 -0.3629 -2.9934 12 7 7.2526 0.0734 -3.5252 13 6 5.1667 -1.1488 -3.7761 14 6 5.5095 -1.4949 -5.0996 15 1 6.1357 -0.8375 -5.6846 16 6 5.0385 -2.6894 -5.6546 17 7 5.0555 -2.8595 -6.9524 18 14 4.3854 -4.0418 -4.5438 19 1 2.9240 -3.8616 -4.3514 20 1 4.6430 -5.3637 -5.1693 21 1 5.0699 -3.9750 -3.2277 22 6 3.9484 -1.5829 -3.2228 23 1 -0.5399 0.9353 -0.0004 24 1 -0.5400 -0.9353 0.0004 25 1 2.6903 1.3627 -0.8900 26 1 1.3552 2.1336 -0.0005 27 1 2.6902 1.3629 0.8900 28 1 1.4385 -2.0853 0.4351 29 1 2.9742 -1.1987 0.5900 30 1 0.4669 -2.2872 -1.8573 31 1 1.6014 -2.2262 -3.2274 32 1 1.1304 -4.5691 -2.5663 33 1 2.8396 -4.1583 -2.2884 34 1 1.7052 -4.2195 -0.9181 35 1 4.2383 -0.2080 -0.1460 36 1 6.3652 0.5693 -1.0924 37 1 7.8130 0.6830 -3.0200 38 1 7.5347 -0.2316 -4.4017 39 1 4.7286 -3.6877 -7.3373 40 1 3.2694 -2.1827 -3.8107 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384614820.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:58 Heat of formation + Delta-G solvation = 44.628669 kcal Electronic energy + Delta-G solvation = -20085.082741 eV Core-core repulsion = 17285.800498 eV Total energy + Delta-G solvation = -2799.282243 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -38.76870 -36.82268 -34.59166 -33.41725 -32.54554 -30.61818 -29.66827 -27.61394 -26.92377 -24.93000 -24.59554 -22.27434 -21.04255 -19.40622 -18.22971 -17.17873 -16.57346 -15.86835 -15.11061 -14.87297 -14.78840 -14.52434 -13.95519 -13.56662 -13.03546 -12.82948 -12.74881 -12.43229 -12.18276 -12.01557 -11.71492 -11.60974 -11.47737 -11.21155 -11.08340 -10.91766 -10.78302 -10.47196 -10.29413 -9.87722 -9.66315 -9.46456 -8.96245 -8.87754 -7.77334 -7.49028 -6.78732 -5.76075 -4.18420 2.37334 2.77915 3.03798 3.20051 3.37695 3.43398 4.03827 4.11478 4.69228 5.06234 5.11756 5.29982 5.39318 5.57076 5.58956 5.72202 5.76621 5.83281 5.92434 5.95324 6.06914 6.08796 6.11779 6.31828 6.33901 6.45015 6.56786 6.77822 6.79597 6.86074 7.02680 7.14950 7.31750 7.44864 7.55735 7.72881 7.99444 8.31155 8.34845 8.60775 8.62456 8.91264 9.09422 9.15891 10.23769 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.018817 B = 0.008612 C = 0.006494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.683411 B = 3250.330222 C = 4310.968135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.125 4.125 3 C -0.119 4.119 4 C 0.164 3.836 5 N -0.631 5.631 6 C 0.127 3.873 7 C -0.175 4.175 8 C 0.201 3.799 9 C -0.255 4.255 10 C -0.143 4.143 11 C 0.096 3.904 12 N -0.886 5.886 13 C 0.080 3.920 14 C -0.450 4.450 15 H 0.086 0.914 16 C 0.082 3.918 17 N -0.823 5.823 18 Si 0.914 3.086 19 H -0.263 1.263 20 H -0.302 1.302 21 H -0.250 1.250 22 C -0.276 4.276 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.081 0.919 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.050 0.950 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.376 0.624 38 H 0.392 0.608 39 H 0.281 0.719 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.603 1.548 10.560 12.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.127 4.127 3 C -0.176 4.176 4 C 0.040 3.960 5 N -0.346 5.346 6 C 0.003 3.997 7 C -0.233 4.233 8 C 0.104 3.896 9 C -0.279 4.279 10 C -0.168 4.168 11 C -0.005 4.005 12 N -0.429 5.429 13 C 0.074 3.926 14 C -0.480 4.480 15 H 0.104 0.896 16 C -0.134 4.134 17 N -0.449 5.449 18 Si 0.743 3.257 19 H -0.189 1.189 20 H -0.230 1.230 21 H -0.173 1.173 22 C -0.300 4.300 23 H 0.110 0.890 24 H 0.109 0.891 25 H 0.100 0.900 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.113 0.887 36 H 0.108 0.892 37 H 0.201 0.799 38 H 0.221 0.779 39 H 0.091 0.909 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.795 1.331 10.350 11.937 hybrid contribution -0.087 -0.541 0.133 0.564 sum -5.883 0.790 10.483 12.047 Atomic orbital electron populations 1.23575 0.95200 1.01107 1.04357 1.22432 0.95642 0.97209 0.97381 1.20934 1.00071 0.93648 1.02950 1.20185 0.98740 0.92168 0.84906 1.46256 1.18777 1.57580 1.11989 1.21156 0.92177 0.89683 0.96697 1.22387 1.02449 0.97511 1.00986 1.17357 0.84848 0.95145 0.92288 1.19696 0.97474 1.11681 0.99024 1.19791 0.97733 1.05271 0.93964 1.17756 0.87848 1.02665 0.92261 1.41863 1.21960 1.56051 1.22990 1.17172 0.90044 0.92873 0.92513 1.19101 1.28234 1.04823 0.95856 0.89627 1.26090 0.92289 0.99961 0.95067 1.69735 1.36679 1.26494 1.11965 0.86427 0.80181 0.77878 0.81261 1.18929 1.22999 1.17324 1.20403 0.99427 1.14738 0.95432 0.89045 0.89094 0.90031 0.93015 0.92011 0.91719 0.90485 0.92241 0.90802 0.92642 0.92202 0.93109 0.88732 0.89235 0.79865 0.77898 0.90925 0.87613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.59 13.90 29.02 0.40 -2.18 16 2 C -0.12 -1.76 5.63 -101.06 -0.57 -2.33 16 3 C -0.12 -1.64 9.02 36.01 0.32 -1.32 16 4 C 0.16 2.47 5.37 -5.19 -0.03 2.45 16 5 N -0.63 -11.57 2.59 -173.12 -0.45 -12.02 16 6 C 0.13 2.18 5.87 -4.04 -0.02 2.15 16 7 C -0.17 -2.85 9.44 37.16 0.35 -2.50 16 8 C 0.20 4.35 6.55 -83.77 -0.55 3.81 16 9 C -0.26 -5.27 7.76 -39.14 -0.30 -5.57 16 10 C -0.14 -3.03 9.87 -39.47 -0.39 -3.42 16 11 C 0.10 2.22 6.79 -83.23 -0.56 1.66 16 12 N -0.89 -17.59 8.97 32.75 0.29 -17.29 16 13 C 0.08 2.03 5.13 -106.66 -0.55 1.48 16 14 C -0.45 -12.15 8.89 -37.91 -0.34 -12.49 16 15 H 0.09 2.39 7.08 -52.48 -0.37 2.01 16 16 C 0.08 2.20 5.41 -17.33 -0.09 2.10 16 17 N -0.82 -22.42 13.93 55.55 0.77 -21.65 16 18 Si 0.91 21.51 22.31 -169.99 -3.79 17.72 16 19 H -0.26 -5.80 5.34 56.52 0.30 -5.50 16 20 H -0.30 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.25 -6.14 7.01 56.52 0.40 -5.75 16 22 C -0.28 -6.69 6.39 -38.75 -0.25 -6.94 16 23 H 0.09 1.06 7.83 -52.49 -0.41 0.65 16 24 H 0.09 1.07 7.99 -52.49 -0.42 0.65 16 25 H 0.08 1.33 6.92 -51.93 -0.36 0.98 16 26 H 0.05 0.63 7.78 -51.93 -0.40 0.23 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.86 7.92 -51.93 -0.41 0.45 16 29 H 0.08 1.17 6.17 -51.93 -0.32 0.85 16 30 H 0.06 0.87 8.07 -51.93 -0.42 0.45 16 31 H 0.07 1.42 6.13 -51.93 -0.32 1.10 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 1.14 5.33 -51.93 -0.28 0.86 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.09 1.74 5.24 -52.49 -0.27 1.46 16 36 H 0.09 1.67 8.06 -52.48 -0.42 1.25 16 37 H 0.38 6.21 8.84 -40.82 -0.36 5.85 16 38 H 0.39 7.90 7.18 -40.82 -0.29 7.61 16 39 H 0.28 7.02 8.30 -40.82 -0.34 6.68 16 40 H 0.11 2.59 2.54 -52.48 -0.13 2.45 16 LS Contribution 309.09 15.07 4.66 4.66 Total: -1.00 -28.13 309.09 -6.80 -34.92 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: -5.70 Total: 16.76 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: -2.57 Total: -23.10 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: 0.62 Total: -50.96 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -3.79 Total: 17.72 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.13 -6.80 -34.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384614820.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.549 kcal (2) G-P(sol) polarization free energy of solvation -28.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds