Wall clock time and date at job start Mon Mar 30 2020 06:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50699 * 120.00253 * 2 1 4 4 C 1.50706 * 120.00125 * 179.97438 * 2 1 3 5 5 N 1.46506 * 109.46694 * 95.00317 * 4 2 1 6 6 C 1.46501 * 119.99878 * 270.00301 * 5 4 2 7 7 C 1.53002 * 109.46841 * 270.00149 * 6 5 4 8 8 C 1.39848 * 119.99610 * 90.00385 * 5 4 2 9 9 C 1.39605 * 119.84475 * 0.25113 * 8 5 4 10 10 C 1.38058 * 120.54745 * 180.30511 * 9 8 5 11 11 C 1.38730 * 120.22346 * 359.44029 * 10 9 8 12 12 N 1.38868 * 120.16583 * 180.25451 * 11 10 9 13 13 C 1.41559 * 119.67387 * 0.28068 * 11 10 9 14 14 C 1.41027 * 120.27119 * 180.02562 * 13 11 10 15 15 H 1.08007 * 119.99697 * 330.45131 * 14 13 11 16 16 C 1.39888 * 120.00293 * 150.44473 * 14 13 11 17 17 N 1.30896 * 119.99747 * 162.54662 * 16 14 13 18 18 Si 1.86797 * 119.99938 * 342.54689 * 16 14 13 19 19 H 1.48504 * 109.46823 * 90.67777 * 18 16 14 20 20 H 1.48494 * 109.46999 * 210.67306 * 18 16 14 21 21 H 1.48494 * 109.47064 * 330.67766 * 18 16 14 22 22 C 1.38010 * 119.83884 * 179.97438 * 8 5 4 23 23 H 1.07998 * 119.99413 * 0.02562 * 1 2 3 24 24 H 1.07996 * 119.99912 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47232 * 239.99406 * 3 2 1 26 26 H 1.09001 * 109.47151 * 359.97438 * 3 2 1 27 27 H 1.09003 * 109.47520 * 119.99674 * 3 2 1 28 28 H 1.08998 * 109.46725 * 335.01192 * 4 2 1 29 29 H 1.08999 * 109.47647 * 215.00250 * 4 2 1 30 30 H 1.08998 * 109.47046 * 30.00502 * 6 5 4 31 31 H 1.08996 * 109.46779 * 150.00323 * 6 5 4 32 32 H 1.09001 * 109.46903 * 180.02562 * 7 6 5 33 33 H 1.08996 * 109.47017 * 299.99533 * 7 6 5 34 34 H 1.08996 * 109.47292 * 60.00488 * 7 6 5 35 35 H 1.08000 * 119.72027 * 0.03961 * 9 8 5 36 36 H 1.08005 * 119.88312 * 179.71896 * 10 9 8 37 37 H 0.97005 * 119.99393 * 353.99751 * 12 11 10 38 38 H 0.96999 * 120.00055 * 173.99089 * 12 11 10 39 39 H 0.97003 * 120.00170 * 180.02562 * 17 16 14 40 40 H 1.08008 * 120.11326 * 0.02562 * 22 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 7 2.4120 -1.6683 -1.3753 6 6 1.4916 -2.4819 -2.1736 7 6 1.8149 -3.9637 -1.9720 8 6 3.6232 -1.2384 -1.9265 9 6 4.5001 -0.4677 -1.1610 10 6 5.6968 -0.0302 -1.6927 11 6 6.0462 -0.3629 -2.9934 12 7 7.2526 0.0734 -3.5252 13 6 5.1667 -1.1488 -3.7761 14 6 5.5095 -1.4949 -5.0996 15 1 6.1357 -0.8375 -5.6846 16 6 5.0385 -2.6894 -5.6546 17 7 5.0555 -2.8595 -6.9524 18 14 4.3854 -4.0418 -4.5438 19 1 2.9240 -3.8616 -4.3514 20 1 4.6430 -5.3637 -5.1693 21 1 5.0699 -3.9750 -3.2277 22 6 3.9484 -1.5829 -3.2228 23 1 -0.5399 0.9353 -0.0004 24 1 -0.5400 -0.9353 0.0004 25 1 2.6903 1.3627 -0.8900 26 1 1.3552 2.1336 -0.0005 27 1 2.6902 1.3629 0.8900 28 1 1.4385 -2.0853 0.4351 29 1 2.9742 -1.1987 0.5900 30 1 0.4669 -2.2872 -1.8573 31 1 1.6014 -2.2262 -3.2274 32 1 1.1304 -4.5691 -2.5663 33 1 2.8396 -4.1583 -2.2884 34 1 1.7052 -4.2195 -0.9181 35 1 4.2383 -0.2080 -0.1460 36 1 6.3652 0.5693 -1.0924 37 1 7.8130 0.6830 -3.0200 38 1 7.5347 -0.2316 -4.4017 39 1 4.7286 -3.6877 -7.3373 40 1 3.2694 -2.1827 -3.8107 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384614820.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:58 Heat of formation + Delta-G solvation = 27.482170 kcal Electronic energy + Delta-G solvation = -20085.826269 eV Core-core repulsion = 17285.800498 eV Total energy + Delta-G solvation = -2800.025771 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.35375 -38.30955 -35.81721 -35.33235 -34.11676 -32.32838 -31.15806 -29.10369 -28.06596 -26.50549 -26.17448 -23.82771 -22.72033 -20.96336 -19.61175 -18.78538 -18.27225 -17.49643 -16.69390 -16.43687 -16.17739 -15.90278 -15.56415 -14.73382 -14.71910 -14.31655 -14.03650 -13.90319 -13.84083 -13.64534 -13.32060 -13.01827 -12.87245 -12.63180 -12.53060 -12.33873 -12.25470 -12.01044 -11.78522 -11.68716 -11.34786 -11.24597 -10.75583 -9.96537 -9.33985 -9.29005 -8.75912 -7.42772 -6.13396 0.94995 1.21099 1.28736 1.33794 1.52829 1.56084 2.19784 2.67630 2.79119 3.69794 3.74450 4.00207 4.05256 4.10211 4.39604 4.43894 4.50603 4.55773 4.68932 4.76987 4.83798 4.85572 4.93176 4.97443 5.03716 5.07808 5.15426 5.23920 5.30152 5.37637 5.50712 5.71467 5.77519 5.83699 5.97084 6.06765 6.23449 6.37162 6.66028 6.86706 6.95288 7.02526 7.32755 7.59647 8.31908 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.018817 B = 0.008612 C = 0.006494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.683411 B = 3250.330222 C = 4310.968135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.148 4.148 3 C -0.116 4.116 4 C 0.161 3.839 5 N -0.632 5.632 6 C 0.123 3.877 7 C -0.173 4.173 8 C 0.193 3.807 9 C -0.237 4.237 10 C -0.143 4.143 11 C 0.080 3.920 12 N -0.879 5.879 13 C 0.046 3.954 14 C -0.475 4.475 15 H 0.059 0.941 16 C 0.044 3.956 17 N -0.867 5.867 18 Si 0.967 3.033 19 H -0.245 1.245 20 H -0.297 1.297 21 H -0.268 1.268 22 C -0.283 4.283 23 H 0.102 0.898 24 H 0.104 0.896 25 H 0.051 0.949 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.028 0.972 34 H 0.071 0.929 35 H 0.124 0.876 36 H 0.120 0.880 37 H 0.393 0.607 38 H 0.389 0.611 39 H 0.285 0.715 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.431 1.756 13.898 15.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.149 4.149 3 C -0.173 4.173 4 C 0.039 3.961 5 N -0.346 5.346 6 C -0.001 4.001 7 C -0.231 4.231 8 C 0.094 3.906 9 C -0.261 4.261 10 C -0.167 4.167 11 C -0.022 4.022 12 N -0.422 5.422 13 C 0.041 3.959 14 C -0.506 4.506 15 H 0.077 0.923 16 C -0.167 4.167 17 N -0.495 5.495 18 Si 0.793 3.207 19 H -0.170 1.170 20 H -0.225 1.225 21 H -0.193 1.193 22 C -0.307 4.307 23 H 0.121 0.879 24 H 0.122 0.878 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.106 0.894 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.048 0.952 34 H 0.090 0.910 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.221 0.779 38 H 0.217 0.783 39 H 0.095 0.905 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.641 1.558 13.721 15.782 hybrid contribution 0.397 -0.444 -0.656 0.886 sum -7.244 1.114 13.064 14.980 Atomic orbital electron populations 1.23807 0.94767 1.02332 1.01530 1.22366 0.96169 0.96653 0.99730 1.20883 1.00168 0.94259 1.01988 1.20385 0.99371 0.93523 0.82847 1.46440 1.17626 1.57234 1.13305 1.21255 0.93514 0.90082 0.95240 1.22359 1.00933 0.97137 1.02682 1.17470 0.86524 0.94994 0.91616 1.20111 0.96554 1.09392 0.99999 1.20192 0.98362 1.04809 0.93371 1.17981 0.88560 1.02663 0.93016 1.41783 1.21379 1.56135 1.22952 1.17361 0.91385 0.94746 0.92436 1.19091 1.29324 1.05263 0.96910 0.92319 1.26672 0.92762 1.01353 0.95958 1.69776 1.39367 1.27432 1.12969 0.85648 0.80500 0.75907 0.78623 1.17032 1.22518 1.19300 1.20501 0.98990 1.14537 0.96640 0.87943 0.87803 0.93007 0.91795 0.90873 0.89359 0.90554 0.89152 0.93576 0.90857 0.95245 0.90955 0.85856 0.86171 0.77868 0.78324 0.90467 0.88424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.89 13.90 67.78 0.94 -2.95 16 2 C -0.15 -3.59 5.63 -16.48 -0.09 -3.68 16 3 C -0.12 -2.84 9.02 71.24 0.64 -2.19 16 4 C 0.16 4.22 5.37 85.63 0.46 4.68 16 5 N -0.63 -21.43 2.59 -701.62 -1.82 -23.25 16 6 C 0.12 3.89 5.87 86.38 0.51 4.40 16 7 C -0.17 -5.15 9.44 71.98 0.68 -4.47 16 8 C 0.19 8.07 6.55 38.14 0.25 8.32 16 9 C -0.24 -9.17 7.76 22.56 0.18 -9.00 16 10 C -0.14 -5.75 9.87 22.34 0.22 -5.52 16 11 C 0.08 3.69 6.79 38.96 0.26 3.96 16 12 N -0.88 -34.97 8.97 -50.31 -0.45 -35.42 16 13 C 0.05 2.40 5.13 -21.18 -0.11 2.30 16 14 C -0.47 -26.94 8.89 23.35 0.21 -26.73 16 15 H 0.06 3.51 7.08 -2.91 -0.02 3.49 16 16 C 0.04 2.45 5.41 85.23 0.46 2.91 16 17 N -0.87 -49.56 13.93 21.82 0.30 -49.25 16 18 Si 0.97 45.88 22.31 68.60 1.53 47.41 16 19 H -0.25 -10.70 5.34 99.48 0.53 -10.17 16 20 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 21 H -0.27 -13.35 7.01 99.48 0.70 -12.65 16 22 C -0.28 -13.74 6.39 22.81 0.15 -13.60 16 23 H 0.10 1.93 7.83 -2.91 -0.02 1.91 16 24 H 0.10 1.91 7.99 -2.91 -0.02 1.88 16 25 H 0.05 1.57 6.92 -2.38 -0.02 1.55 16 26 H 0.06 1.37 7.78 -2.39 -0.02 1.35 16 27 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.09 1.91 7.92 -2.39 -0.02 1.89 16 29 H 0.08 2.00 6.17 -2.39 -0.01 1.98 16 30 H 0.09 2.29 8.07 -2.39 -0.02 2.27 16 31 H 0.05 1.72 6.13 -2.39 -0.01 1.71 16 32 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.03 1.05 5.33 -2.39 -0.01 1.04 16 34 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.12 4.05 5.24 -2.91 -0.02 4.03 16 36 H 0.12 4.06 8.06 -2.91 -0.02 4.03 16 37 H 0.39 12.58 8.84 -92.70 -0.82 11.76 16 38 H 0.39 16.23 7.18 -92.71 -0.67 15.56 16 39 H 0.29 14.93 8.30 -92.71 -0.77 14.16 16 40 H 0.10 4.84 2.54 -2.91 -0.01 4.83 16 Total: -1.00 -62.84 309.09 3.71 -59.12 By element: Atomic # 1 Polarization: 43.57 SS G_CDS: -0.60 Total: 42.97 kcal Atomic # 6 Polarization: -46.34 SS G_CDS: 4.75 Total: -41.58 kcal Atomic # 7 Polarization: -105.95 SS G_CDS: -1.97 Total: -107.92 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.53 Total: 47.41 kcal Total: -62.84 3.71 -59.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384614820.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.605 kcal (2) G-P(sol) polarization free energy of solvation -62.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds