Wall clock time and date at job start Mon Mar 30 2020 06:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50693 * 119.99812 * 2 1 4 4 N 1.46499 * 109.47340 * 124.99896 * 3 2 1 5 5 C 1.39861 * 119.99902 * 89.99698 * 4 3 2 6 6 C 1.39602 * 119.83898 * 5.84274 * 5 4 3 7 7 C 1.38057 * 120.54382 * 180.29937 * 6 5 4 8 8 C 1.38731 * 120.22481 * 359.45245 * 7 6 5 9 9 N 1.38869 * 120.17079 * 180.24814 * 8 7 6 10 10 C 1.41562 * 119.67165 * 0.27470 * 8 7 6 11 11 C 1.41033 * 120.26856 * 180.02562 * 10 8 7 12 12 H 1.08002 * 120.00039 * 28.32473 * 11 10 8 13 13 C 1.39878 * 120.00284 * 208.32022 * 11 10 8 14 14 N 1.30909 * 120.00007 * 10.85822 * 13 11 10 15 15 Si 1.86792 * 120.00344 * 190.85699 * 13 11 10 16 16 H 1.48500 * 109.47231 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47530 * 120.00231 * 15 13 11 18 18 H 1.48504 * 109.47327 * 239.99988 * 15 13 11 19 19 C 1.38005 * 119.83841 * 185.59417 * 5 4 3 20 20 C 1.46501 * 120.00212 * 269.99561 * 4 3 2 21 21 C 1.52996 * 109.47068 * 305.43178 * 20 4 3 22 22 C 1.53002 * 109.46539 * 65.42605 * 20 4 3 23 23 H 1.08005 * 119.99734 * 180.02562 * 1 2 3 24 24 H 1.08002 * 120.00178 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.00178 * 179.97438 * 2 1 3 26 26 H 1.08993 * 109.47587 * 4.99498 * 3 2 1 27 27 H 1.09010 * 109.47079 * 244.99522 * 3 2 1 28 28 H 1.07995 * 119.72537 * 0.05063 * 6 5 4 29 29 H 1.08000 * 119.88616 * 179.72155 * 7 6 5 30 30 H 0.97004 * 119.98959 * 354.92156 * 9 8 7 31 31 H 0.96996 * 120.00763 * 174.91032 * 9 8 7 32 32 H 0.96993 * 120.00124 * 174.98272 * 14 13 11 33 33 H 1.08000 * 120.11514 * 0.02562 * 19 5 4 34 34 H 1.08993 * 109.47117 * 185.42405 * 20 4 3 35 35 H 1.09005 * 109.47635 * 59.99308 * 21 20 4 36 36 H 1.09003 * 109.47102 * 179.97438 * 21 20 4 37 37 H 1.08998 * 109.46935 * 299.99878 * 21 20 4 38 38 H 1.09000 * 109.47011 * 60.00736 * 22 20 4 39 39 H 1.09003 * 109.46582 * 180.02562 * 22 20 4 40 40 H 1.08993 * 109.47715 * 299.99981 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 4.2970 0.8486 0.9768 6 6 4.7468 0.4552 -0.2849 7 6 6.0284 -0.0298 -0.4531 8 6 6.8886 -0.1206 0.6316 9 7 8.1792 -0.6038 0.4602 10 6 6.4441 0.2811 1.9141 11 6 7.3082 0.1946 3.0253 12 1 8.3763 0.2738 2.8863 13 6 6.7820 0.0062 4.3076 14 7 5.5184 -0.3012 4.4579 15 14 7.8822 0.1933 5.8055 16 1 9.2580 0.5422 5.3688 17 1 7.3519 1.2718 6.6777 18 1 7.9113 -1.0848 6.5611 19 6 5.1337 0.7679 2.0712 20 6 2.5588 1.8651 2.4248 21 6 2.0104 3.2807 2.2346 22 6 1.4635 0.9674 3.0041 23 1 -0.5400 -0.9354 0.0004 24 1 -0.5400 0.9353 -0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3586 2.1316 0.0895 27 1 2.6213 1.4025 -0.9314 28 1 4.0854 0.5270 -1.1356 29 1 6.3638 -0.3353 -1.4331 30 1 8.4576 -0.9474 -0.4032 31 1 8.8022 -0.5975 1.2036 32 1 5.1701 -0.5032 5.3403 33 1 4.7835 1.0766 3.0451 34 1 3.4061 1.8926 3.1099 35 1 1.1630 3.2531 1.5494 36 1 1.6864 3.6772 3.1969 37 1 2.7906 3.9201 1.8218 38 1 1.8543 -0.0411 3.1397 39 1 1.1397 1.3644 3.9662 40 1 0.6162 0.9398 2.3191 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384658107.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:17 Heat of formation + Delta-G solvation = 49.928174 kcal Electronic energy + Delta-G solvation = -19935.751643 eV Core-core repulsion = 17136.699203 eV Total energy + Delta-G solvation = -2799.052439 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -38.55138 -36.71483 -33.62905 -33.41250 -32.94910 -30.28662 -29.34125 -27.26601 -26.58751 -24.78080 -24.42867 -21.38745 -20.24305 -19.77381 -18.53817 -17.22936 -16.29696 -15.43012 -15.16804 -14.96056 -14.49511 -14.17412 -13.61842 -13.41389 -12.84111 -12.72929 -12.39885 -12.21822 -11.82654 -11.78046 -11.59423 -11.45037 -11.18401 -11.07490 -11.01395 -10.88634 -10.62854 -10.35772 -10.07786 -9.72303 -9.57882 -9.35768 -9.10414 -8.82806 -7.59123 -7.16097 -6.52145 -5.48367 -4.06238 2.56270 2.91432 3.14888 3.18725 3.31865 3.48128 4.05260 4.21188 4.84422 5.27160 5.38679 5.43544 5.54147 5.67475 5.75505 5.81013 5.90843 6.03072 6.04675 6.16851 6.24130 6.28088 6.36953 6.45193 6.67453 6.71020 6.85638 6.92906 7.00467 7.16665 7.23588 7.37179 7.44329 7.75627 7.93218 7.95647 8.18570 8.49335 8.63348 8.87791 8.96659 9.03330 9.27458 9.35568 10.42879 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.018389 B = 0.007417 C = 0.005831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.250745 B = 3774.189487 C = 4800.960054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.143 4.143 3 C 0.154 3.846 4 N -0.627 5.627 5 C 0.176 3.824 6 C -0.251 4.251 7 C -0.155 4.155 8 C 0.087 3.913 9 N -0.889 5.889 10 C 0.091 3.909 11 C -0.461 4.461 12 H 0.070 0.930 13 C 0.074 3.926 14 N -0.806 5.806 15 Si 0.903 3.097 16 H -0.265 1.265 17 H -0.276 1.276 18 H -0.278 1.278 19 C -0.197 4.197 20 C 0.148 3.852 21 C -0.161 4.161 22 C -0.159 4.159 23 H 0.089 0.911 24 H 0.090 0.910 25 H 0.107 0.893 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.374 0.626 31 H 0.388 0.612 32 H 0.273 0.727 33 H 0.129 0.871 34 H 0.097 0.903 35 H 0.049 0.951 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.048 0.952 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.995 2.759 -3.339 7.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.163 4.163 3 C 0.030 3.970 4 N -0.342 5.342 5 C 0.079 3.921 6 C -0.275 4.275 7 C -0.179 4.179 8 C -0.014 4.014 9 N -0.432 5.432 10 C 0.086 3.914 11 C -0.493 4.493 12 H 0.088 0.912 13 C -0.141 4.141 14 N -0.434 5.434 15 Si 0.729 3.271 16 H -0.189 1.189 17 H -0.201 1.201 18 H -0.204 1.204 19 C -0.221 4.221 20 C 0.044 3.956 21 C -0.219 4.219 22 C -0.218 4.218 23 H 0.108 0.892 24 H 0.108 0.892 25 H 0.125 0.875 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.105 0.895 29 H 0.102 0.898 30 H 0.199 0.801 31 H 0.216 0.784 32 H 0.084 0.916 33 H 0.146 0.854 34 H 0.115 0.885 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.349 2.866 -3.089 7.620 hybrid contribution 0.658 -0.380 0.689 1.025 sum -5.691 2.486 -2.400 6.658 Atomic orbital electron populations 1.23633 0.95851 1.00969 1.04548 1.23699 0.95929 1.00482 0.96155 1.20257 0.91991 0.93504 0.91264 1.46163 1.09448 1.69762 1.08791 1.17564 0.83461 0.97134 0.93894 1.19682 0.96852 1.16581 0.94366 1.19704 0.94666 1.08208 0.95317 1.17907 0.86221 1.02917 0.94308 1.41808 1.12370 1.75235 1.13738 1.17024 0.92754 0.91903 0.89768 1.19157 0.94019 1.45381 0.90750 0.91219 1.25731 0.95066 0.93208 1.00102 1.69849 1.13787 1.35336 1.24384 0.86351 0.81029 0.78375 0.81350 1.18858 1.20120 1.20376 1.20764 0.95044 1.09525 0.96757 1.20797 0.97507 0.90985 0.86322 1.22195 1.00828 0.97784 1.01087 1.22216 0.98908 1.01032 0.99631 0.89217 0.89208 0.87511 0.91820 0.90501 0.89487 0.89831 0.80137 0.78375 0.91619 0.85365 0.88487 0.93219 0.92564 0.92558 0.92158 0.93248 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.79 13.27 29.01 0.39 -2.40 16 2 C -0.14 -2.21 8.62 -36.03 -0.31 -2.53 16 3 C 0.15 2.50 5.29 -5.20 -0.03 2.47 16 4 N -0.63 -12.10 2.53 -165.56 -0.42 -12.52 16 5 C 0.18 4.07 6.53 -83.77 -0.55 3.52 16 6 C -0.25 -5.66 9.25 -39.14 -0.36 -6.02 16 7 C -0.15 -3.54 9.87 -39.47 -0.39 -3.93 16 8 C 0.09 2.11 6.79 -83.23 -0.56 1.55 16 9 N -0.89 -18.23 8.97 32.75 0.29 -17.94 16 10 C 0.09 2.40 5.57 -106.66 -0.59 1.80 16 11 C -0.46 -12.06 8.48 -37.91 -0.32 -12.39 16 12 H 0.07 1.75 6.70 -52.49 -0.35 1.39 16 13 C 0.07 1.86 5.25 -17.33 -0.09 1.76 16 14 N -0.81 -20.89 10.81 55.54 0.60 -20.29 16 15 Si 0.90 19.01 29.58 -169.99 -5.03 13.98 16 16 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 17 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 18 H -0.28 -5.82 7.11 56.52 0.40 -5.41 16 19 C -0.20 -5.06 7.86 -38.75 -0.30 -5.36 16 20 C 0.15 2.67 3.16 -67.93 -0.21 2.45 16 21 C -0.16 -2.38 9.06 37.16 0.34 -2.04 16 22 C -0.16 -2.64 8.79 37.16 0.33 -2.31 16 23 H 0.09 1.09 8.06 -52.48 -0.42 0.66 16 24 H 0.09 1.06 7.84 -52.49 -0.41 0.65 16 25 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 26 H 0.06 0.92 5.81 -51.93 -0.30 0.62 16 27 H 0.08 1.26 5.97 -51.92 -0.31 0.95 16 28 H 0.09 1.78 6.00 -52.49 -0.31 1.46 16 29 H 0.08 1.71 8.06 -52.49 -0.42 1.29 16 30 H 0.37 6.51 8.84 -40.82 -0.36 6.15 16 31 H 0.39 7.81 7.08 -40.82 -0.29 7.52 16 32 H 0.27 6.55 8.30 -40.82 -0.34 6.21 16 33 H 0.13 3.39 3.92 -52.49 -0.21 3.19 16 34 H 0.10 2.02 5.38 -51.93 -0.28 1.74 16 35 H 0.05 0.67 6.51 -51.93 -0.34 0.33 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.05 0.78 6.11 -51.93 -0.32 0.47 16 LS Contribution 316.20 15.07 4.77 4.77 Total: -1.00 -27.40 316.20 -8.04 -35.44 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: -5.57 Total: 19.99 kcal Atomic # 6 Polarization: -20.74 SS G_CDS: -2.68 Total: -23.42 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: 0.48 Total: -50.75 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.40 -8.04 -35.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384658107.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.364 kcal (2) G-P(sol) polarization free energy of solvation -27.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds