Wall clock time and date at job start Mon Mar 30 2020 06:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50693 * 119.99812 * 2 1 4 4 N 1.46499 * 109.47340 * 124.99896 * 3 2 1 5 5 C 1.39861 * 119.99902 * 89.99698 * 4 3 2 6 6 C 1.39602 * 119.83898 * 5.84274 * 5 4 3 7 7 C 1.38057 * 120.54382 * 180.29937 * 6 5 4 8 8 C 1.38731 * 120.22481 * 359.45245 * 7 6 5 9 9 N 1.38869 * 120.17079 * 180.24814 * 8 7 6 10 10 C 1.41562 * 119.67165 * 0.27470 * 8 7 6 11 11 C 1.41033 * 120.26856 * 180.02562 * 10 8 7 12 12 H 1.08002 * 120.00039 * 28.32473 * 11 10 8 13 13 C 1.39878 * 120.00284 * 208.32022 * 11 10 8 14 14 N 1.30909 * 120.00007 * 10.85822 * 13 11 10 15 15 Si 1.86792 * 120.00344 * 190.85699 * 13 11 10 16 16 H 1.48500 * 109.47231 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47530 * 120.00231 * 15 13 11 18 18 H 1.48504 * 109.47327 * 239.99988 * 15 13 11 19 19 C 1.38005 * 119.83841 * 185.59417 * 5 4 3 20 20 C 1.46501 * 120.00212 * 269.99561 * 4 3 2 21 21 C 1.52996 * 109.47068 * 305.43178 * 20 4 3 22 22 C 1.53002 * 109.46539 * 65.42605 * 20 4 3 23 23 H 1.08005 * 119.99734 * 180.02562 * 1 2 3 24 24 H 1.08002 * 120.00178 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.00178 * 179.97438 * 2 1 3 26 26 H 1.08993 * 109.47587 * 4.99498 * 3 2 1 27 27 H 1.09010 * 109.47079 * 244.99522 * 3 2 1 28 28 H 1.07995 * 119.72537 * 0.05063 * 6 5 4 29 29 H 1.08000 * 119.88616 * 179.72155 * 7 6 5 30 30 H 0.97004 * 119.98959 * 354.92156 * 9 8 7 31 31 H 0.96996 * 120.00763 * 174.91032 * 9 8 7 32 32 H 0.96993 * 120.00124 * 174.98272 * 14 13 11 33 33 H 1.08000 * 120.11514 * 0.02562 * 19 5 4 34 34 H 1.08993 * 109.47117 * 185.42405 * 20 4 3 35 35 H 1.09005 * 109.47635 * 59.99308 * 21 20 4 36 36 H 1.09003 * 109.47102 * 179.97438 * 21 20 4 37 37 H 1.08998 * 109.46935 * 299.99878 * 21 20 4 38 38 H 1.09000 * 109.47011 * 60.00736 * 22 20 4 39 39 H 1.09003 * 109.46582 * 180.02562 * 22 20 4 40 40 H 1.08993 * 109.47715 * 299.99981 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 4.2970 0.8486 0.9768 6 6 4.7468 0.4552 -0.2849 7 6 6.0284 -0.0298 -0.4531 8 6 6.8886 -0.1206 0.6316 9 7 8.1792 -0.6038 0.4602 10 6 6.4441 0.2811 1.9141 11 6 7.3082 0.1946 3.0253 12 1 8.3763 0.2738 2.8863 13 6 6.7820 0.0062 4.3076 14 7 5.5184 -0.3012 4.4579 15 14 7.8822 0.1933 5.8055 16 1 9.2580 0.5422 5.3688 17 1 7.3519 1.2718 6.6777 18 1 7.9113 -1.0848 6.5611 19 6 5.1337 0.7679 2.0712 20 6 2.5588 1.8651 2.4248 21 6 2.0104 3.2807 2.2346 22 6 1.4635 0.9674 3.0041 23 1 -0.5400 -0.9354 0.0004 24 1 -0.5400 0.9353 -0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3586 2.1316 0.0895 27 1 2.6213 1.4025 -0.9314 28 1 4.0854 0.5270 -1.1356 29 1 6.3638 -0.3353 -1.4331 30 1 8.4576 -0.9474 -0.4032 31 1 8.8022 -0.5975 1.2036 32 1 5.1701 -0.5032 5.3403 33 1 4.7835 1.0766 3.0451 34 1 3.4061 1.8926 3.1099 35 1 1.1630 3.2531 1.5494 36 1 1.6864 3.6772 3.1969 37 1 2.7906 3.9201 1.8218 38 1 1.8543 -0.0411 3.1397 39 1 1.1397 1.3644 3.9662 40 1 0.6162 0.9398 2.3191 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384658107.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:16 Heat of formation + Delta-G solvation = 35.308992 kcal Electronic energy + Delta-G solvation = -19936.385578 eV Core-core repulsion = 17136.699203 eV Total energy + Delta-G solvation = -2799.686375 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.18100 -38.33072 -35.36523 -34.80961 -34.56321 -31.81266 -31.18149 -28.84389 -27.90435 -26.61168 -25.89878 -23.11903 -21.94407 -21.05615 -20.04761 -18.98283 -17.99638 -17.15188 -16.78312 -16.55532 -16.08806 -15.51204 -15.10685 -14.78404 -14.51530 -14.08962 -13.98854 -13.87560 -13.59069 -13.18743 -13.06880 -12.95321 -12.77018 -12.57960 -12.52514 -12.37226 -12.08288 -11.90517 -11.59068 -11.46547 -11.22199 -11.10493 -10.89716 -10.10377 -9.21974 -9.04012 -8.39805 -7.20708 -5.99032 1.14366 1.40247 1.41390 1.52850 1.54078 1.67512 2.28519 2.76274 2.96522 3.78240 3.96544 4.02444 4.16284 4.29154 4.42266 4.45274 4.56346 4.66464 4.75071 4.81821 4.83901 4.97827 5.02280 5.11255 5.15652 5.26113 5.32604 5.47252 5.50860 5.51383 5.66257 5.78935 5.88601 5.96525 6.14050 6.20398 6.35459 6.61810 6.95273 7.09576 7.14216 7.22884 7.50116 7.68137 8.56722 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.018389 B = 0.007417 C = 0.005831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.250745 B = 3774.189487 C = 4800.960054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.172 4.172 3 C 0.155 3.845 4 N -0.628 5.628 5 C 0.172 3.828 6 C -0.254 4.254 7 C -0.161 4.161 8 C 0.070 3.930 9 N -0.880 5.880 10 C 0.054 3.946 11 C -0.488 4.488 12 H 0.071 0.929 13 C 0.031 3.969 14 N -0.837 5.837 15 Si 0.974 3.026 16 H -0.260 1.260 17 H -0.272 1.272 18 H -0.273 1.273 19 C -0.221 4.221 20 C 0.142 3.858 21 C -0.149 4.149 22 C -0.147 4.147 23 H 0.102 0.898 24 H 0.113 0.887 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.389 0.611 31 H 0.389 0.611 32 H 0.276 0.724 33 H 0.113 0.887 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.045 0.955 38 H 0.025 0.975 39 H 0.066 0.934 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.489 3.455 -3.888 9.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.192 4.192 3 C 0.032 3.968 4 N -0.342 5.342 5 C 0.073 3.927 6 C -0.278 4.278 7 C -0.185 4.185 8 C -0.032 4.032 9 N -0.423 5.423 10 C 0.049 3.951 11 C -0.520 4.520 12 H 0.089 0.911 13 C -0.181 4.181 14 N -0.465 5.465 15 Si 0.797 3.203 16 H -0.183 1.183 17 H -0.198 1.198 18 H -0.198 1.198 19 C -0.245 4.245 20 C 0.038 3.962 21 C -0.208 4.208 22 C -0.205 4.205 23 H 0.120 0.880 24 H 0.131 0.869 25 H 0.098 0.902 26 H 0.108 0.892 27 H 0.091 0.909 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.217 0.783 31 H 0.217 0.783 32 H 0.086 0.914 33 H 0.131 0.869 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.064 0.936 38 H 0.045 0.955 39 H 0.085 0.915 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.858 3.561 -3.668 9.375 hybrid contribution 0.989 -0.603 0.759 1.385 sum -6.869 2.958 -2.909 8.025 Atomic orbital electron populations 1.23880 0.94826 1.02671 1.00364 1.23423 0.96752 0.98975 1.00016 1.20414 0.91787 0.94843 0.89788 1.46335 1.08640 1.69073 1.10188 1.17694 0.84981 0.96530 0.93471 1.19997 0.97199 1.15733 0.94826 1.20046 0.94684 1.07692 0.96100 1.18081 0.87706 1.03351 0.94038 1.41677 1.11187 1.74831 1.14652 1.17431 0.93540 0.93082 0.91077 1.19382 0.94146 1.46779 0.91714 0.91107 1.26523 0.96420 0.92523 1.02626 1.69954 1.15335 1.36119 1.25085 0.85271 0.79173 0.78330 0.77509 1.18337 1.19767 1.19828 1.20791 0.95757 1.10893 0.97055 1.20861 0.96663 0.93364 0.85295 1.22083 1.01001 0.94989 1.02679 1.22089 0.98692 0.98768 1.00966 0.87996 0.86855 0.90220 0.89207 0.90911 0.87313 0.87344 0.78296 0.78280 0.91366 0.86948 0.92335 0.91029 0.90700 0.93568 0.95550 0.91474 0.91153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.10 13.27 67.78 0.90 -3.20 16 2 C -0.17 -5.05 8.62 25.64 0.22 -4.83 16 3 C 0.15 4.73 5.29 85.63 0.45 5.19 16 4 N -0.63 -24.18 2.53 -677.70 -1.71 -25.89 16 5 C 0.17 8.13 6.53 38.13 0.25 8.38 16 6 C -0.25 -11.43 9.25 22.56 0.21 -11.22 16 7 C -0.16 -7.33 9.87 22.34 0.22 -7.11 16 8 C 0.07 3.45 6.79 38.97 0.26 3.72 16 9 N -0.88 -36.19 8.97 -50.31 -0.45 -36.64 16 10 C 0.05 2.95 5.57 -21.18 -0.12 2.84 16 11 C -0.49 -26.47 8.48 23.35 0.20 -26.27 16 12 H 0.07 3.66 6.70 -2.91 -0.02 3.64 16 13 C 0.03 1.59 5.25 85.23 0.45 2.04 16 14 N -0.84 -45.21 10.81 21.82 0.24 -44.97 16 15 Si 0.97 39.89 29.58 68.60 2.03 41.92 16 16 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 17 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 18 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 19 C -0.22 -11.87 7.86 22.81 0.18 -11.69 16 20 C 0.14 5.10 3.16 44.99 0.14 5.24 16 21 C -0.15 -4.12 9.06 71.98 0.65 -3.46 16 22 C -0.15 -4.74 8.79 71.98 0.63 -4.11 16 23 H 0.10 2.11 8.06 -2.91 -0.02 2.09 16 24 H 0.11 2.10 7.84 -2.91 -0.02 2.08 16 25 H 0.08 2.77 8.06 -2.91 -0.02 2.75 16 26 H 0.09 2.26 5.81 -2.39 -0.01 2.25 16 27 H 0.07 2.27 5.97 -2.38 -0.01 2.25 16 28 H 0.11 4.33 6.00 -2.91 -0.02 4.31 16 29 H 0.11 4.29 8.06 -2.91 -0.02 4.26 16 30 H 0.39 13.28 8.84 -92.71 -0.82 12.46 16 31 H 0.39 15.85 7.08 -92.71 -0.66 15.20 16 32 H 0.28 13.77 8.30 -92.71 -0.77 13.00 16 33 H 0.11 6.33 3.92 -2.91 -0.01 6.32 16 34 H 0.06 2.56 5.38 -2.39 -0.01 2.55 16 35 H 0.07 1.65 6.51 -2.38 -0.02 1.64 16 36 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.07 1.97 6.11 -2.39 -0.01 1.95 16 Total: -1.00 -61.62 316.20 4.34 -57.28 By element: Atomic # 1 Polarization: 53.22 SS G_CDS: -0.41 Total: 52.80 kcal Atomic # 6 Polarization: -49.15 SS G_CDS: 4.65 Total: -44.50 kcal Atomic # 7 Polarization: -105.58 SS G_CDS: -1.93 Total: -107.50 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.92 kcal Total: -61.62 4.34 -57.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384658107.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.590 kcal (2) G-P(sol) polarization free energy of solvation -61.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds