Wall clock time and date at job start Mon Mar 30 2020 06:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 112.85047 * 2 1 4 4 C 1.53785 * 113.68359 * 228.73444 * 2 1 3 5 5 C 1.53787 * 87.07696 * 220.00737 * 4 2 1 6 6 H 1.09008 * 113.61255 * 139.98492 * 5 4 2 7 7 N 1.46498 * 113.69094 * 270.87096 * 5 4 2 8 8 C 1.39849 * 120.00247 * 254.06650 * 7 5 4 9 9 C 1.39602 * 119.84038 * 0.02562 * 8 7 5 10 10 C 1.38055 * 120.54880 * 179.97438 * 9 8 7 11 11 C 1.38736 * 120.22413 * 0.04167 * 10 9 8 12 12 N 1.38863 * 120.16635 * 179.97438 * 11 10 9 13 13 C 1.41559 * 119.67222 * 359.97438 * 11 10 9 14 14 C 1.41027 * 120.27148 * 179.97438 * 13 11 10 15 15 H 1.08003 * 119.99189 * 25.46585 * 14 13 11 16 16 C 1.39879 * 120.00596 * 205.46686 * 14 13 11 17 17 N 1.30909 * 119.99719 * 15.18510 * 16 14 13 18 18 Si 1.86796 * 120.00262 * 195.18557 * 16 14 13 19 19 H 1.48502 * 109.47397 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47204 * 119.99790 * 18 16 14 21 21 H 1.48499 * 109.47115 * 240.00038 * 18 16 14 22 22 C 1.38014 * 119.83804 * 179.72560 * 8 7 5 23 23 C 1.53775 * 87.08224 * 25.43409 * 5 4 2 24 24 H 1.09000 * 113.61189 * 89.11439 * 23 5 4 25 25 C 1.52996 * 113.61460 * 220.01722 * 23 5 4 26 26 H 1.08999 * 109.46600 * 288.80176 * 1 2 3 27 27 H 1.09000 * 109.47357 * 48.79836 * 1 2 3 28 28 H 1.08995 * 109.47542 * 168.80360 * 1 2 3 29 29 H 1.09005 * 113.61345 * 105.46240 * 4 2 1 30 30 H 1.08999 * 113.61960 * 334.55557 * 4 2 1 31 31 H 0.96997 * 119.99741 * 74.06620 * 7 5 4 32 32 H 1.07996 * 119.72229 * 359.97438 * 9 8 7 33 33 H 1.08004 * 119.88836 * 180.02562 * 10 9 8 34 34 H 0.97001 * 120.00054 * 0.02562 * 12 11 10 35 35 H 0.97000 * 119.99816 * 179.97438 * 12 11 10 36 36 H 0.97002 * 119.99488 * 179.97438 * 17 16 14 37 37 H 1.07997 * 120.11661 * 0.02562 * 22 8 7 38 38 H 1.08997 * 109.47230 * 60.00197 * 25 23 5 39 39 H 1.09000 * 109.46982 * 179.97438 * 25 23 5 40 40 H 1.08999 * 109.46808 * 300.00002 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9533 1.0044 0.0000 4 6 2.1477 -0.9289 -1.0586 5 6 3.1936 -1.3120 0.0018 6 1 3.4466 -2.3723 0.0024 7 7 4.3747 -0.4453 0.0038 8 6 5.5870 -0.9142 -0.5122 9 6 5.6677 -2.2086 -1.0289 10 6 6.8569 -2.6862 -1.5424 11 6 7.9876 -1.8823 -1.5494 12 7 9.1832 -2.3641 -2.0657 13 6 7.9164 -0.5683 -1.0275 14 6 9.0581 0.2596 -1.0279 15 1 9.8425 0.0972 -1.7523 16 6 9.1746 1.2909 -0.0901 17 7 8.3938 1.3115 0.9605 18 14 10.4441 2.6387 -0.3369 19 1 11.1958 2.3870 -1.5926 20 1 9.7595 3.9536 -0.4244 21 1 11.3868 2.6469 0.8105 22 6 6.6961 -0.0929 -0.5139 23 6 2.1460 -0.9282 1.0601 24 1 1.4951 -1.7532 1.3494 25 6 2.7324 -0.1829 2.2608 26 1 -0.3632 0.3312 0.9728 27 1 -0.3634 0.6769 -0.7732 28 1 -0.3634 -1.0080 -0.1995 29 1 2.5670 -0.3985 -1.9136 30 1 1.4973 -1.7541 -1.3485 31 1 4.3159 0.4538 0.3630 32 1 4.7927 -2.8415 -1.0268 33 1 6.9073 -3.6892 -1.9398 34 1 9.2293 -3.2647 -2.4230 35 1 9.9721 -1.7998 -2.0697 36 1 8.4749 2.0265 1.6110 37 1 6.6288 0.9094 -0.1175 38 1 3.2045 0.7389 1.9211 39 1 1.9354 0.0555 2.9650 40 1 3.4751 -0.8120 2.7514 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385595197.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:58 Heat of formation + Delta-G solvation = 34.000679 kcal Electronic energy + Delta-G solvation = -19429.495938 eV Core-core repulsion = 16629.752830 eV Total energy + Delta-G solvation = -2799.743107 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.60699 -37.58366 -34.30418 -33.42696 -31.30079 -29.94006 -29.40240 -28.66756 -25.97505 -24.72686 -22.88787 -22.23717 -20.93604 -19.97534 -18.48099 -16.93243 -16.16227 -15.47410 -15.16525 -14.72161 -14.61908 -14.19293 -13.87892 -13.73874 -13.06711 -12.66129 -12.40822 -12.30856 -12.10136 -11.91570 -11.77844 -11.37009 -11.31570 -11.18278 -11.02164 -10.94237 -10.64780 -10.32677 -10.00826 -9.90245 -9.61297 -9.52571 -9.23835 -9.04427 -7.71230 -7.19786 -6.58881 -5.50437 -4.04389 2.91390 3.14773 3.19077 3.32864 3.49845 4.04840 4.39550 4.71583 4.79563 4.84148 5.06241 5.24700 5.44767 5.53115 5.59692 5.67830 5.79637 5.85633 5.94038 5.95185 6.05403 6.08586 6.21335 6.31458 6.38855 6.43639 6.62297 6.65506 6.70085 7.15265 7.19933 7.35495 7.51787 7.75094 7.91688 8.03699 8.16073 8.48994 8.79310 8.93888 8.97406 9.02918 9.28515 9.36939 10.39603 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.021309 B = 0.005613 C = 0.004738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.672432 B = 4987.644677 C = 5908.409222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.110 4.110 3 H 0.085 0.915 4 C -0.160 4.160 5 C 0.150 3.850 6 H 0.083 0.917 7 N -0.739 5.739 8 C 0.178 3.822 9 C -0.254 4.254 10 C -0.153 4.153 11 C 0.084 3.916 12 N -0.889 5.889 13 C 0.094 3.906 14 C -0.463 4.463 15 H 0.071 0.929 16 C 0.076 3.924 17 N -0.801 5.801 18 Si 0.901 3.099 19 H -0.264 1.264 20 H -0.275 1.275 21 H -0.278 1.278 22 C -0.200 4.200 23 C -0.122 4.122 24 H 0.090 0.910 25 C -0.136 4.136 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.388 0.612 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.374 0.626 35 H 0.388 0.612 36 H 0.273 0.727 37 H 0.119 0.881 38 H 0.055 0.945 39 H 0.047 0.953 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.710 -1.717 -0.032 9.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.128 4.128 3 H 0.104 0.896 4 C -0.199 4.199 5 C 0.042 3.958 6 H 0.101 0.899 7 N -0.372 5.372 8 C 0.080 3.920 9 C -0.278 4.278 10 C -0.177 4.177 11 C -0.017 4.017 12 N -0.432 5.432 13 C 0.089 3.911 14 C -0.494 4.494 15 H 0.089 0.911 16 C -0.140 4.140 17 N -0.428 5.428 18 Si 0.727 3.273 19 H -0.187 1.187 20 H -0.201 1.201 21 H -0.204 1.204 22 C -0.225 4.225 23 C -0.141 4.141 24 H 0.108 0.892 25 C -0.193 4.193 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.222 0.778 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.199 0.801 35 H 0.216 0.784 36 H 0.084 0.916 37 H 0.136 0.864 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.886 -1.686 0.194 10.031 hybrid contribution 0.793 0.830 0.014 1.148 sum -9.094 -0.856 0.209 9.136 Atomic orbital electron populations 1.21710 0.95515 1.01349 1.01092 1.22584 0.94749 0.98513 0.96957 0.89649 1.23610 0.98980 0.99274 0.98072 1.21463 0.85162 0.95365 0.93839 0.89894 1.44047 1.06658 1.15725 1.70780 1.17515 0.85079 0.93215 0.96200 1.19656 0.97241 0.95848 1.15028 1.19709 0.92767 0.97667 1.07570 1.17863 0.86214 0.93624 1.03992 1.41808 1.10788 1.16985 1.73608 1.16971 0.92810 0.89007 0.92303 1.19165 1.04076 1.12168 1.14013 0.91122 1.25741 0.96273 0.98040 0.93914 1.69893 1.35285 1.29992 1.07666 0.86386 0.80805 0.81041 0.79105 1.18750 1.20062 1.20356 1.20525 0.90387 0.99813 1.11748 1.23027 0.97866 0.98657 0.94585 0.89226 1.21577 1.00132 1.00457 0.97167 0.92977 0.93071 0.92868 0.91249 0.90471 0.77778 0.89555 0.89846 0.80140 0.78371 0.91576 0.86363 0.92610 0.93433 0.92221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.71 37.16 0.36 -1.08 16 2 C -0.11 -1.37 3.80 -89.80 -0.34 -1.71 16 3 H 0.09 1.13 7.96 -51.93 -0.41 0.72 16 4 C -0.16 -2.23 7.44 -25.91 -0.19 -2.42 16 5 C 0.15 2.39 3.95 -67.12 -0.26 2.12 16 6 H 0.08 1.39 6.19 -51.92 -0.32 1.07 16 7 N -0.74 -14.17 4.98 -51.38 -0.26 -14.42 16 8 C 0.18 4.15 6.64 -83.77 -0.56 3.60 16 9 C -0.25 -5.81 9.26 -39.14 -0.36 -6.17 16 10 C -0.15 -3.54 9.86 -39.46 -0.39 -3.93 16 11 C 0.08 2.05 6.79 -83.23 -0.56 1.49 16 12 N -0.89 -18.42 8.98 32.75 0.29 -18.12 16 13 C 0.09 2.52 5.58 -106.66 -0.60 1.92 16 14 C -0.46 -12.24 8.50 -37.91 -0.32 -12.57 16 15 H 0.07 1.78 6.67 -52.48 -0.35 1.43 16 16 C 0.08 1.93 5.18 -17.33 -0.09 1.84 16 17 N -0.80 -21.05 10.88 55.54 0.60 -20.45 16 18 Si 0.90 19.07 29.59 -169.99 -5.03 14.04 16 19 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 20 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 21 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 22 C -0.20 -5.23 8.50 -38.74 -0.33 -5.55 16 23 C -0.12 -1.59 3.88 -89.81 -0.35 -1.94 16 24 H 0.09 1.06 8.10 -51.93 -0.42 0.64 16 25 C -0.14 -1.81 9.09 37.16 0.34 -1.48 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.52 7.95 -51.93 -0.41 0.10 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.08 0.96 7.97 -51.93 -0.41 0.54 16 31 H 0.39 7.26 7.13 -40.82 -0.29 6.97 16 32 H 0.09 1.80 6.05 -52.49 -0.32 1.48 16 33 H 0.08 1.73 8.06 -52.48 -0.42 1.30 16 34 H 0.37 6.56 8.83 -40.82 -0.36 6.20 16 35 H 0.39 7.89 7.04 -40.82 -0.29 7.60 16 36 H 0.27 6.61 8.30 -40.82 -0.34 6.27 16 37 H 0.12 3.21 6.15 -52.49 -0.32 2.89 16 38 H 0.05 0.78 6.60 -51.93 -0.34 0.44 16 39 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 317.63 15.07 4.79 4.79 Total: -1.00 -27.72 317.63 -9.18 -36.91 By element: Atomic # 1 Polarization: 29.06 SS G_CDS: -5.92 Total: 23.14 kcal Atomic # 6 Polarization: -22.22 SS G_CDS: -3.66 Total: -25.87 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: 0.64 Total: -52.99 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.72 -9.18 -36.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385595197.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.907 kcal (2) G-P(sol) polarization free energy of solvation -27.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds