Wall clock time and date at job start Mon Mar 30 2020 06:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 112.85047 * 2 1 4 4 C 1.53785 * 113.68359 * 228.73444 * 2 1 3 5 5 C 1.53787 * 87.07696 * 220.00737 * 4 2 1 6 6 H 1.09008 * 113.61255 * 139.98492 * 5 4 2 7 7 N 1.46498 * 113.69094 * 270.87096 * 5 4 2 8 8 C 1.39849 * 120.00247 * 254.06650 * 7 5 4 9 9 C 1.39602 * 119.84038 * 0.02562 * 8 7 5 10 10 C 1.38055 * 120.54880 * 179.97438 * 9 8 7 11 11 C 1.38736 * 120.22413 * 0.04167 * 10 9 8 12 12 N 1.38863 * 120.16635 * 179.97438 * 11 10 9 13 13 C 1.41559 * 119.67222 * 359.97438 * 11 10 9 14 14 C 1.41027 * 120.27148 * 179.97438 * 13 11 10 15 15 H 1.08003 * 119.99189 * 25.46585 * 14 13 11 16 16 C 1.39879 * 120.00596 * 205.46686 * 14 13 11 17 17 N 1.30909 * 119.99719 * 15.18510 * 16 14 13 18 18 Si 1.86796 * 120.00262 * 195.18557 * 16 14 13 19 19 H 1.48502 * 109.47397 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47204 * 119.99790 * 18 16 14 21 21 H 1.48499 * 109.47115 * 240.00038 * 18 16 14 22 22 C 1.38014 * 119.83804 * 179.72560 * 8 7 5 23 23 C 1.53775 * 87.08224 * 25.43409 * 5 4 2 24 24 H 1.09000 * 113.61189 * 89.11439 * 23 5 4 25 25 C 1.52996 * 113.61460 * 220.01722 * 23 5 4 26 26 H 1.08999 * 109.46600 * 288.80176 * 1 2 3 27 27 H 1.09000 * 109.47357 * 48.79836 * 1 2 3 28 28 H 1.08995 * 109.47542 * 168.80360 * 1 2 3 29 29 H 1.09005 * 113.61345 * 105.46240 * 4 2 1 30 30 H 1.08999 * 113.61960 * 334.55557 * 4 2 1 31 31 H 0.96997 * 119.99741 * 74.06620 * 7 5 4 32 32 H 1.07996 * 119.72229 * 359.97438 * 9 8 7 33 33 H 1.08004 * 119.88836 * 180.02562 * 10 9 8 34 34 H 0.97001 * 120.00054 * 0.02562 * 12 11 10 35 35 H 0.97000 * 119.99816 * 179.97438 * 12 11 10 36 36 H 0.97002 * 119.99488 * 179.97438 * 17 16 14 37 37 H 1.07997 * 120.11661 * 0.02562 * 22 8 7 38 38 H 1.08997 * 109.47230 * 60.00197 * 25 23 5 39 39 H 1.09000 * 109.46982 * 179.97438 * 25 23 5 40 40 H 1.08999 * 109.46808 * 300.00002 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9533 1.0044 0.0000 4 6 2.1477 -0.9289 -1.0586 5 6 3.1936 -1.3120 0.0018 6 1 3.4466 -2.3723 0.0024 7 7 4.3747 -0.4453 0.0038 8 6 5.5870 -0.9142 -0.5122 9 6 5.6677 -2.2086 -1.0289 10 6 6.8569 -2.6862 -1.5424 11 6 7.9876 -1.8823 -1.5494 12 7 9.1832 -2.3641 -2.0657 13 6 7.9164 -0.5683 -1.0275 14 6 9.0581 0.2596 -1.0279 15 1 9.8425 0.0972 -1.7523 16 6 9.1746 1.2909 -0.0901 17 7 8.3938 1.3115 0.9605 18 14 10.4441 2.6387 -0.3369 19 1 11.1958 2.3870 -1.5926 20 1 9.7595 3.9536 -0.4244 21 1 11.3868 2.6469 0.8105 22 6 6.6961 -0.0929 -0.5139 23 6 2.1460 -0.9282 1.0601 24 1 1.4951 -1.7532 1.3494 25 6 2.7324 -0.1829 2.2608 26 1 -0.3632 0.3312 0.9728 27 1 -0.3634 0.6769 -0.7732 28 1 -0.3634 -1.0080 -0.1995 29 1 2.5670 -0.3985 -1.9136 30 1 1.4973 -1.7541 -1.3485 31 1 4.3159 0.4538 0.3630 32 1 4.7927 -2.8415 -1.0268 33 1 6.9073 -3.6892 -1.9398 34 1 9.2293 -3.2647 -2.4230 35 1 9.9721 -1.7998 -2.0697 36 1 8.4749 2.0265 1.6110 37 1 6.6288 0.9094 -0.1175 38 1 3.2045 0.7389 1.9211 39 1 1.9354 0.0555 2.9650 40 1 3.4751 -0.8120 2.7514 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385595197.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:57 Heat of formation + Delta-G solvation = 18.627145 kcal Electronic energy + Delta-G solvation = -19430.162584 eV Core-core repulsion = 16629.752830 eV Total energy + Delta-G solvation = -2800.409754 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.84680 -39.33946 -35.95961 -35.30190 -32.82871 -31.30149 -31.04183 -29.87274 -27.69759 -26.55724 -24.10715 -23.48465 -22.59466 -21.66955 -19.87491 -18.66130 -17.89403 -17.24069 -16.76526 -16.40173 -15.98037 -15.37721 -15.20059 -14.96167 -14.33118 -14.24032 -14.09795 -13.77143 -13.65112 -13.35235 -13.16718 -12.93764 -12.77686 -12.66356 -12.39732 -12.39194 -12.06388 -11.82112 -11.66617 -11.31910 -11.14077 -10.94258 -10.85190 -10.68912 -9.34740 -9.12806 -8.48707 -7.27355 -5.99513 1.12466 1.40916 1.51311 1.54432 1.66089 2.27309 2.90219 2.96203 3.62983 3.71888 3.78478 3.94588 3.99896 4.14950 4.54322 4.58813 4.61377 4.66593 4.71572 4.81665 4.92524 4.96485 5.02414 5.08707 5.20321 5.24247 5.24982 5.33496 5.37943 5.44576 5.54734 5.61724 5.71450 5.93157 6.08882 6.19550 6.32186 6.58921 6.98715 7.08882 7.16355 7.29530 7.49211 7.68075 8.51845 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.021309 B = 0.005613 C = 0.004738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.672432 B = 4987.644677 C = 5908.409222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.102 4.102 3 H 0.072 0.928 4 C -0.153 4.153 5 C 0.131 3.869 6 H 0.076 0.924 7 N -0.735 5.735 8 C 0.176 3.824 9 C -0.258 4.258 10 C -0.158 4.158 11 C 0.067 3.933 12 N -0.879 5.879 13 C 0.060 3.940 14 C -0.491 4.491 15 H 0.073 0.927 16 C 0.033 3.967 17 N -0.834 5.834 18 Si 0.974 3.026 19 H -0.258 1.258 20 H -0.272 1.272 21 H -0.272 1.272 22 C -0.226 4.226 23 C -0.109 4.109 24 H 0.113 0.887 25 C -0.135 4.135 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.048 0.952 30 H 0.099 0.901 31 H 0.387 0.613 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.390 0.610 35 H 0.389 0.611 36 H 0.278 0.722 37 H 0.097 0.903 38 H 0.041 0.959 39 H 0.070 0.930 40 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.996 -2.249 -0.143 11.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.120 4.120 3 H 0.091 0.909 4 C -0.192 4.192 5 C 0.024 3.976 6 H 0.094 0.906 7 N -0.368 5.368 8 C 0.076 3.924 9 C -0.281 4.281 10 C -0.182 4.182 11 C -0.034 4.034 12 N -0.423 5.423 13 C 0.055 3.945 14 C -0.523 4.523 15 H 0.091 0.909 16 C -0.180 4.180 17 N -0.462 5.462 18 Si 0.797 3.203 19 H -0.182 1.182 20 H -0.197 1.197 21 H -0.197 1.197 22 C -0.251 4.251 23 C -0.128 4.128 24 H 0.131 0.869 25 C -0.192 4.192 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.118 0.882 31 H 0.221 0.779 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.218 0.782 35 H 0.217 0.783 36 H 0.088 0.912 37 H 0.115 0.885 38 H 0.060 0.940 39 H 0.089 0.911 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.199 -2.246 0.074 11.422 hybrid contribution 1.103 0.913 0.054 1.432 sum -10.096 -1.333 0.129 10.184 Atomic orbital electron populations 1.21676 0.93283 1.02297 1.01923 1.22496 0.96484 0.97427 0.95643 0.90927 1.23575 0.98460 1.00124 0.97043 1.21765 0.84791 0.94370 0.96716 0.90600 1.44085 1.06563 1.16128 1.69980 1.17616 0.85852 0.93241 0.95668 1.19969 0.98092 0.95784 1.14289 1.20059 0.92394 0.98702 1.07040 1.18037 0.87823 0.93301 1.04289 1.41676 1.09733 1.17797 1.73130 1.17362 0.93287 0.90412 0.93458 1.19422 1.04500 1.13555 1.14796 0.90856 1.26561 0.98308 0.99858 0.93245 1.69979 1.36937 1.30871 1.08438 0.85275 0.78146 0.77736 0.79164 1.18192 1.19716 1.19684 1.20489 0.91691 0.99578 1.13360 1.23009 0.96729 0.99311 0.93754 0.86915 1.21555 1.00403 0.99527 0.97722 0.91965 0.92633 0.91714 0.93336 0.88215 0.77866 0.87356 0.87179 0.78226 0.78257 0.91155 0.88478 0.93952 0.91117 0.93906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 9.71 71.98 0.70 -1.65 16 2 C -0.10 -2.34 3.80 -10.27 -0.04 -2.38 16 3 H 0.07 1.87 7.96 -2.39 -0.02 1.85 16 4 C -0.15 -4.00 7.44 31.12 0.23 -3.77 16 5 C 0.13 4.02 3.95 45.52 0.18 4.20 16 6 H 0.08 2.43 6.19 -2.38 -0.01 2.42 16 7 N -0.74 -28.61 4.98 -316.48 -1.58 -30.19 16 8 C 0.18 8.40 6.64 38.14 0.25 8.65 16 9 C -0.26 -11.65 9.26 22.56 0.21 -11.44 16 10 C -0.16 -7.18 9.86 22.35 0.22 -6.96 16 11 C 0.07 3.32 6.79 38.97 0.26 3.58 16 12 N -0.88 -36.07 8.98 -50.31 -0.45 -36.52 16 13 C 0.06 3.30 5.58 -21.18 -0.12 3.18 16 14 C -0.49 -26.71 8.50 23.35 0.20 -26.51 16 15 H 0.07 3.78 6.67 -2.91 -0.02 3.76 16 16 C 0.03 1.69 5.18 85.23 0.44 2.13 16 17 N -0.83 -45.32 10.88 21.82 0.24 -45.08 16 18 Si 0.97 39.75 29.59 68.60 2.03 41.78 16 19 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 20 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 21 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 22 C -0.23 -12.29 8.50 22.81 0.19 -12.10 16 23 C -0.11 -2.62 3.88 -10.27 -0.04 -2.66 16 24 H 0.11 2.25 8.10 -2.39 -0.02 2.23 16 25 C -0.13 -3.44 9.09 71.98 0.65 -2.79 16 26 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.06 1.00 7.95 -2.39 -0.02 0.98 16 29 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 30 H 0.10 2.17 7.97 -2.39 -0.02 2.16 16 31 H 0.39 15.00 7.13 -92.71 -0.66 14.34 16 32 H 0.11 4.34 6.05 -2.91 -0.02 4.33 16 33 H 0.11 4.33 8.06 -2.91 -0.02 4.30 16 34 H 0.39 13.20 8.83 -92.71 -0.82 12.38 16 35 H 0.39 15.83 7.04 -92.71 -0.65 15.17 16 36 H 0.28 13.85 8.30 -92.71 -0.77 13.08 16 37 H 0.10 5.58 6.15 -2.91 -0.02 5.56 16 38 H 0.04 1.18 6.60 -2.39 -0.02 1.16 16 39 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -60.97 317.63 2.52 -58.45 By element: Atomic # 1 Polarization: 61.15 SS G_CDS: -1.06 Total: 60.08 kcal Atomic # 6 Polarization: -51.87 SS G_CDS: 3.35 Total: -48.52 kcal Atomic # 7 Polarization: -110.00 SS G_CDS: -1.79 Total: -111.79 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 2.03 Total: 41.78 kcal Total: -60.97 2.52 -58.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385595197.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.074 kcal (2) G-P(sol) polarization free energy of solvation -60.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds