Wall clock time and date at job start Mon Mar 30 2020 06:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 112.84286 * 2 1 4 4 C 1.53777 * 113.61941 * 228.80447 * 2 1 3 5 5 C 1.53771 * 87.08247 * 219.93180 * 4 2 1 6 6 H 1.09000 * 113.61533 * 270.79659 * 5 4 2 7 7 N 1.46508 * 113.61277 * 139.97849 * 5 4 2 8 8 C 1.39847 * 119.99847 * 104.50515 * 7 5 4 9 9 C 1.39604 * 119.83897 * 359.97438 * 8 7 5 10 10 C 1.38062 * 120.54767 * 179.97438 * 9 8 7 11 11 C 1.38735 * 120.22044 * 0.02562 * 10 9 8 12 12 N 1.38865 * 120.16170 * 179.97438 * 11 10 9 13 13 C 1.41557 * 119.67325 * 0.02562 * 11 10 9 14 14 C 1.41027 * 120.26490 * 179.97438 * 13 11 10 15 15 H 1.08005 * 120.00012 * 25.46216 * 14 13 11 16 16 C 1.39882 * 120.00092 * 205.45614 * 14 13 11 17 17 N 1.30903 * 120.00184 * 15.15887 * 16 14 13 18 18 Si 1.86803 * 120.00367 * 195.16119 * 16 14 13 19 19 H 1.48496 * 109.47378 * 89.99612 * 18 16 14 20 20 H 1.48501 * 109.47348 * 210.00328 * 18 16 14 21 21 H 1.48509 * 109.46634 * 329.99700 * 18 16 14 22 22 C 1.38001 * 119.83873 * 179.72500 * 8 7 5 23 23 C 1.53781 * 113.69245 * 131.26468 * 2 1 3 24 24 H 1.08995 * 113.61589 * 254.54254 * 23 2 1 25 25 C 1.53002 * 113.61131 * 25.44861 * 23 2 1 26 26 H 1.09007 * 109.46849 * 171.69312 * 1 2 3 27 27 H 1.08995 * 109.47318 * 291.68963 * 1 2 3 28 28 H 1.09003 * 109.47414 * 51.69230 * 1 2 3 29 29 H 1.08997 * 113.61393 * 105.38094 * 4 2 1 30 30 H 1.09005 * 113.68675 * 334.49557 * 4 2 1 31 31 H 0.96999 * 119.99755 * 284.50113 * 7 5 4 32 32 H 1.07998 * 119.72545 * 0.02562 * 9 8 7 33 33 H 1.08000 * 119.88408 * 180.02562 * 10 9 8 34 34 H 0.97003 * 119.99756 * 0.02562 * 12 11 10 35 35 H 0.97000 * 119.99864 * 179.97438 * 12 11 10 36 36 H 0.96997 * 120.00565 * 179.97438 * 17 16 14 37 37 H 1.07995 * 120.11850 * 359.97438 * 22 8 7 38 38 H 1.09004 * 109.46557 * 157.49574 * 25 23 2 39 39 H 1.08996 * 109.46748 * 277.49423 * 25 23 2 40 40 H 1.08993 * 109.47442 * 37.49832 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9532 1.0046 0.0000 4 6 2.1461 -0.9280 -1.0602 5 6 3.1937 -1.3117 -0.0020 6 1 4.0724 -0.6668 -0.0035 7 7 3.5339 -2.7368 -0.0028 8 6 4.7478 -3.1655 -0.5491 9 6 5.6326 -2.2328 -1.0932 10 6 6.8351 -2.6398 -1.6359 11 6 7.1770 -3.9843 -1.6463 12 7 8.3866 -4.3924 -2.1929 13 6 6.2863 -4.9382 -1.0980 14 6 6.6211 -6.3082 -1.1026 15 1 7.6576 -6.6107 -1.1256 16 6 5.6106 -7.2751 -1.0772 17 7 4.3747 -6.9376 -1.3461 18 14 6.0247 -9.0481 -0.6595 19 1 5.9125 -9.2503 0.8074 20 1 5.0789 -9.9552 -1.3580 21 1 7.4121 -9.3484 -1.0959 22 6 5.0674 -4.5080 -0.5430 23 6 2.1479 -0.9288 1.0585 24 1 2.5671 -0.3984 1.9135 25 6 1.2350 -2.0872 1.4654 26 1 -0.3633 -1.0170 -0.1485 27 1 -0.3634 0.3798 0.9548 28 1 -0.3634 0.6370 -0.8064 29 1 2.5637 -0.3970 -1.9156 30 1 1.4961 -1.7534 -1.3506 31 1 2.9172 -3.3828 0.3756 32 1 5.3747 -1.1841 -1.0889 33 1 7.5118 -1.9090 -2.0536 34 1 8.9949 -3.7367 -2.5683 35 1 8.6234 -5.3330 -2.1986 36 1 3.6741 -7.6082 -1.3289 37 1 4.3825 -5.2262 -0.1172 38 1 1.8370 -2.8960 1.8795 39 1 0.5236 -1.7427 2.2159 40 1 0.6941 -2.4481 0.5906 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385595199.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:01 Heat of formation + Delta-G solvation = 34.806108 kcal Electronic energy + Delta-G solvation = -19412.324505 eV Core-core repulsion = 16612.616324 eV Total energy + Delta-G solvation = -2799.708181 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.70676 -37.61579 -34.41562 -33.42313 -31.36525 -29.46402 -29.29464 -28.85336 -26.04653 -24.72160 -23.59890 -22.10085 -20.90682 -19.54433 -18.00992 -17.08422 -16.15638 -15.87007 -15.42974 -15.00821 -14.71429 -14.47266 -13.81966 -13.25019 -12.57849 -12.54294 -12.36533 -12.27035 -12.04131 -12.02106 -11.90979 -11.58643 -11.35542 -11.26746 -10.99982 -10.95674 -10.49550 -10.28535 -10.08508 -9.99001 -9.66191 -9.51660 -9.26981 -9.03937 -7.68763 -7.18990 -6.58013 -5.48800 -4.03930 2.93118 3.14816 3.17244 3.33955 3.51178 4.05133 4.50196 4.65929 4.76798 4.84997 5.02995 5.21921 5.44993 5.47834 5.59310 5.61226 5.78302 5.86000 5.89292 5.96303 5.97736 6.05217 6.13049 6.27735 6.36300 6.40784 6.58928 6.65817 6.73791 7.15872 7.20328 7.35993 7.53139 7.75764 7.92325 8.04613 8.17128 8.49752 8.80464 8.95059 8.98801 9.03914 9.29300 9.37870 10.40375 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.022360 B = 0.005472 C = 0.004590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.933781 B = 5115.388894 C = 6099.081556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.113 4.113 3 H 0.085 0.915 4 C -0.153 4.153 5 C 0.149 3.851 6 H 0.096 0.904 7 N -0.748 5.748 8 C 0.177 3.823 9 C -0.255 4.255 10 C -0.153 4.153 11 C 0.083 3.917 12 N -0.889 5.889 13 C 0.095 3.905 14 C -0.464 4.464 15 H 0.070 0.930 16 C 0.076 3.924 17 N -0.801 5.801 18 Si 0.902 3.098 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.266 1.266 22 C -0.201 4.201 23 C -0.119 4.119 24 H 0.072 0.928 25 C -0.134 4.134 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.389 0.611 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.374 0.626 35 H 0.388 0.612 36 H 0.274 0.726 37 H 0.118 0.882 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.172 8.154 2.968 10.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.132 4.132 3 H 0.103 0.897 4 C -0.193 4.193 5 C 0.041 3.959 6 H 0.114 0.886 7 N -0.382 5.382 8 C 0.078 3.922 9 C -0.279 4.279 10 C -0.177 4.177 11 C -0.018 4.018 12 N -0.432 5.432 13 C 0.090 3.910 14 C -0.495 4.495 15 H 0.089 0.911 16 C -0.140 4.140 17 N -0.428 5.428 18 Si 0.728 3.272 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.190 1.190 22 C -0.226 4.226 23 C -0.139 4.139 24 H 0.090 0.910 25 C -0.191 4.191 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.223 0.777 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.198 0.802 35 H 0.216 0.784 36 H 0.085 0.915 37 H 0.136 0.864 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.447 8.207 2.943 10.280 hybrid contribution 0.177 -1.093 0.035 1.107 sum -5.270 7.115 2.977 9.341 Atomic orbital electron populations 1.21696 0.95141 1.01788 1.00959 1.22396 0.95318 0.97997 0.97485 0.89684 1.23645 0.99266 0.98870 0.97509 1.22024 0.94919 0.84914 0.94036 0.88602 1.44388 1.19974 1.04657 1.69152 1.17559 0.85565 0.93115 0.95941 1.19635 0.97280 0.96019 1.14967 1.19706 0.97776 0.92967 1.07239 1.17857 0.89425 0.92570 1.01906 1.41807 1.20086 1.09333 1.71980 1.16971 0.91049 0.91847 0.91179 1.19145 0.93487 0.90577 1.46286 0.91149 1.25741 0.94666 1.00679 0.92871 1.69879 1.01273 1.35593 1.36093 0.86423 0.79208 0.82299 0.79297 1.19647 1.20642 1.18983 1.20532 1.00902 0.91700 1.09447 1.22827 0.97037 0.96794 0.97219 0.91000 1.21525 0.98818 0.97656 1.01144 0.92357 0.92998 0.93102 0.92025 0.90102 0.77661 0.89688 0.89869 0.80152 0.78375 0.91522 0.86379 0.92083 0.92797 0.92158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.95 37.16 0.33 -1.10 16 2 C -0.11 -1.33 4.29 -89.81 -0.39 -1.72 16 3 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 4 C -0.15 -2.21 7.08 -25.93 -0.18 -2.39 16 5 C 0.15 2.38 3.86 -67.12 -0.26 2.12 16 6 H 0.10 1.59 6.25 -51.93 -0.32 1.27 16 7 N -0.75 -14.51 5.44 -51.39 -0.28 -14.79 16 8 C 0.18 4.16 6.64 -83.78 -0.56 3.60 16 9 C -0.26 -5.87 9.25 -39.14 -0.36 -6.23 16 10 C -0.15 -3.55 9.86 -39.46 -0.39 -3.94 16 11 C 0.08 2.05 6.79 -83.23 -0.56 1.48 16 12 N -0.89 -18.51 8.98 32.75 0.29 -18.22 16 13 C 0.09 2.54 5.58 -106.66 -0.60 1.95 16 14 C -0.46 -12.31 8.50 -37.91 -0.32 -12.63 16 15 H 0.07 1.78 6.67 -52.48 -0.35 1.43 16 16 C 0.08 1.94 5.18 -17.33 -0.09 1.85 16 17 N -0.80 -21.13 10.88 55.54 0.60 -20.53 16 18 Si 0.90 19.12 29.59 -169.99 -5.03 14.09 16 19 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 20 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 21 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 22 C -0.20 -5.29 8.50 -38.75 -0.33 -5.62 16 23 C -0.12 -1.54 4.44 -89.81 -0.40 -1.94 16 24 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 25 C -0.13 -1.65 7.56 37.16 0.28 -1.37 16 26 H 0.06 0.62 6.43 -51.92 -0.33 0.29 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.08 1.23 7.53 -51.93 -0.39 0.84 16 31 H 0.39 7.30 6.58 -40.82 -0.27 7.03 16 32 H 0.09 1.77 6.07 -52.49 -0.32 1.46 16 33 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.37 6.59 8.83 -40.82 -0.36 6.23 16 35 H 0.39 7.93 7.04 -40.82 -0.29 7.64 16 36 H 0.27 6.66 8.30 -40.82 -0.34 6.32 16 37 H 0.12 3.22 6.15 -52.49 -0.32 2.90 16 38 H 0.06 0.81 7.04 -51.93 -0.37 0.44 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.75 6.08 -51.93 -0.32 0.44 16 LS Contribution 312.59 15.07 4.71 4.71 Total: -1.00 -28.03 312.59 -9.26 -37.29 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: -5.73 Total: 23.39 kcal Atomic # 6 Polarization: -22.12 SS G_CDS: -3.82 Total: -25.94 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: 0.62 Total: -53.54 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.09 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.03 -9.26 -37.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385595199.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.095 kcal (2) G-P(sol) polarization free energy of solvation -28.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds