Wall clock time and date at job start Mon Mar 30 2020 06:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 112.84286 * 2 1 4 4 C 1.53777 * 113.61941 * 228.80447 * 2 1 3 5 5 C 1.53771 * 87.08247 * 219.93180 * 4 2 1 6 6 H 1.09000 * 113.61533 * 270.79659 * 5 4 2 7 7 N 1.46508 * 113.61277 * 139.97849 * 5 4 2 8 8 C 1.39847 * 119.99847 * 104.50515 * 7 5 4 9 9 C 1.39604 * 119.83897 * 359.97438 * 8 7 5 10 10 C 1.38062 * 120.54767 * 179.97438 * 9 8 7 11 11 C 1.38735 * 120.22044 * 0.02562 * 10 9 8 12 12 N 1.38865 * 120.16170 * 179.97438 * 11 10 9 13 13 C 1.41557 * 119.67325 * 0.02562 * 11 10 9 14 14 C 1.41027 * 120.26490 * 179.97438 * 13 11 10 15 15 H 1.08005 * 120.00012 * 25.46216 * 14 13 11 16 16 C 1.39882 * 120.00092 * 205.45614 * 14 13 11 17 17 N 1.30903 * 120.00184 * 15.15887 * 16 14 13 18 18 Si 1.86803 * 120.00367 * 195.16119 * 16 14 13 19 19 H 1.48496 * 109.47378 * 89.99612 * 18 16 14 20 20 H 1.48501 * 109.47348 * 210.00328 * 18 16 14 21 21 H 1.48509 * 109.46634 * 329.99700 * 18 16 14 22 22 C 1.38001 * 119.83873 * 179.72500 * 8 7 5 23 23 C 1.53781 * 113.69245 * 131.26468 * 2 1 3 24 24 H 1.08995 * 113.61589 * 254.54254 * 23 2 1 25 25 C 1.53002 * 113.61131 * 25.44861 * 23 2 1 26 26 H 1.09007 * 109.46849 * 171.69312 * 1 2 3 27 27 H 1.08995 * 109.47318 * 291.68963 * 1 2 3 28 28 H 1.09003 * 109.47414 * 51.69230 * 1 2 3 29 29 H 1.08997 * 113.61393 * 105.38094 * 4 2 1 30 30 H 1.09005 * 113.68675 * 334.49557 * 4 2 1 31 31 H 0.96999 * 119.99755 * 284.50113 * 7 5 4 32 32 H 1.07998 * 119.72545 * 0.02562 * 9 8 7 33 33 H 1.08000 * 119.88408 * 180.02562 * 10 9 8 34 34 H 0.97003 * 119.99756 * 0.02562 * 12 11 10 35 35 H 0.97000 * 119.99864 * 179.97438 * 12 11 10 36 36 H 0.96997 * 120.00565 * 179.97438 * 17 16 14 37 37 H 1.07995 * 120.11850 * 359.97438 * 22 8 7 38 38 H 1.09004 * 109.46557 * 157.49574 * 25 23 2 39 39 H 1.08996 * 109.46748 * 277.49423 * 25 23 2 40 40 H 1.08993 * 109.47442 * 37.49832 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9532 1.0046 0.0000 4 6 2.1461 -0.9280 -1.0602 5 6 3.1937 -1.3117 -0.0020 6 1 4.0724 -0.6668 -0.0035 7 7 3.5339 -2.7368 -0.0028 8 6 4.7478 -3.1655 -0.5491 9 6 5.6326 -2.2328 -1.0932 10 6 6.8351 -2.6398 -1.6359 11 6 7.1770 -3.9843 -1.6463 12 7 8.3866 -4.3924 -2.1929 13 6 6.2863 -4.9382 -1.0980 14 6 6.6211 -6.3082 -1.1026 15 1 7.6576 -6.6107 -1.1256 16 6 5.6106 -7.2751 -1.0772 17 7 4.3747 -6.9376 -1.3461 18 14 6.0247 -9.0481 -0.6595 19 1 5.9125 -9.2503 0.8074 20 1 5.0789 -9.9552 -1.3580 21 1 7.4121 -9.3484 -1.0959 22 6 5.0674 -4.5080 -0.5430 23 6 2.1479 -0.9288 1.0585 24 1 2.5671 -0.3984 1.9135 25 6 1.2350 -2.0872 1.4654 26 1 -0.3633 -1.0170 -0.1485 27 1 -0.3634 0.3798 0.9548 28 1 -0.3634 0.6370 -0.8064 29 1 2.5637 -0.3970 -1.9156 30 1 1.4961 -1.7534 -1.3506 31 1 2.9172 -3.3828 0.3756 32 1 5.3747 -1.1841 -1.0889 33 1 7.5118 -1.9090 -2.0536 34 1 8.9949 -3.7367 -2.5683 35 1 8.6234 -5.3330 -2.1986 36 1 3.6741 -7.6082 -1.3289 37 1 4.3825 -5.2262 -0.1172 38 1 1.8370 -2.8960 1.8795 39 1 0.5236 -1.7427 2.2159 40 1 0.6941 -2.4481 0.5906 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385595199.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:01 Heat of formation + Delta-G solvation = 18.980058 kcal Electronic energy + Delta-G solvation = -19413.010774 eV Core-core repulsion = 16612.616324 eV Total energy + Delta-G solvation = -2800.394450 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.90892 -39.38709 -36.06986 -35.30732 -32.92849 -31.30251 -30.38916 -30.05416 -27.76337 -26.56047 -24.70358 -23.55881 -22.59375 -21.27157 -19.17185 -18.88175 -17.79420 -17.30629 -17.03297 -16.56544 -16.38356 -15.97958 -14.96636 -14.65487 -14.24097 -14.05281 -13.86680 -13.68534 -13.46669 -13.20792 -13.13791 -12.99153 -12.93673 -12.76748 -12.63562 -12.41195 -12.06671 -11.80336 -11.46209 -11.36459 -11.09589 -10.95499 -10.93468 -10.79604 -9.33203 -9.12541 -8.48295 -7.26504 -5.99633 1.13233 1.40996 1.52208 1.52651 1.67042 2.27423 2.92093 3.04459 3.63860 3.67286 3.78366 3.93332 3.96089 4.13912 4.50597 4.58422 4.60420 4.64678 4.70831 4.86624 4.89252 4.94679 4.99863 5.10323 5.12084 5.24037 5.25109 5.32297 5.37917 5.46041 5.54978 5.64487 5.72941 5.92499 6.08479 6.19542 6.32462 6.59009 6.98679 7.09064 7.17136 7.30748 7.49708 7.68027 8.52002 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.022360 B = 0.005472 C = 0.004590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.933781 B = 5115.388894 C = 6099.081556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.096 4.096 3 H 0.101 0.899 4 C -0.154 4.154 5 C 0.131 3.869 6 H 0.092 0.908 7 N -0.745 5.745 8 C 0.174 3.826 9 C -0.259 4.259 10 C -0.158 4.158 11 C 0.067 3.933 12 N -0.879 5.879 13 C 0.061 3.939 14 C -0.492 4.492 15 H 0.074 0.926 16 C 0.033 3.967 17 N -0.834 5.834 18 Si 0.975 3.025 19 H -0.269 1.269 20 H -0.275 1.275 21 H -0.258 1.258 22 C -0.228 4.228 23 C -0.111 4.111 24 H 0.082 0.918 25 C -0.132 4.132 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.388 0.612 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.390 0.610 35 H 0.389 0.611 36 H 0.278 0.722 37 H 0.097 0.903 38 H 0.045 0.955 39 H 0.075 0.925 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.530 9.292 3.354 11.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.115 4.115 3 H 0.119 0.881 4 C -0.193 4.193 5 C 0.025 3.975 6 H 0.109 0.891 7 N -0.378 5.378 8 C 0.073 3.927 9 C -0.283 4.283 10 C -0.182 4.182 11 C -0.035 4.035 12 N -0.423 5.423 13 C 0.055 3.945 14 C -0.524 4.524 15 H 0.092 0.908 16 C -0.180 4.180 17 N -0.462 5.462 18 Si 0.797 3.203 19 H -0.194 1.194 20 H -0.200 1.200 21 H -0.182 1.182 22 C -0.253 4.253 23 C -0.130 4.130 24 H 0.101 0.899 25 C -0.190 4.190 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.223 0.777 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.218 0.782 35 H 0.217 0.783 36 H 0.089 0.911 37 H 0.115 0.885 38 H 0.064 0.936 39 H 0.094 0.906 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.806 9.385 3.324 11.525 hybrid contribution 0.266 -1.327 -0.096 1.357 sum -5.540 8.058 3.228 10.297 Atomic orbital electron populations 1.21685 0.93702 1.01815 1.02207 1.22349 0.96431 0.97843 0.94867 0.88120 1.23591 0.98768 0.99243 0.97736 1.22366 0.95771 0.82654 0.96747 0.89056 1.44487 1.18598 1.06366 1.68326 1.17680 0.87012 0.92429 0.95530 1.19946 0.97086 0.97012 1.14239 1.20057 0.98291 0.93072 1.06766 1.18032 0.90350 0.92894 1.02242 1.41674 1.19271 1.09889 1.71511 1.17365 0.92063 0.92835 0.92201 1.19410 0.94005 0.91216 1.47729 0.90828 1.26569 0.94316 1.04873 0.92217 1.69969 1.02255 1.37124 1.36876 0.85311 0.79227 0.76822 0.78892 1.19390 1.19991 1.18175 1.20504 1.01110 0.92632 1.11031 1.22802 0.95936 0.97151 0.97153 0.89940 1.21514 0.98880 0.97070 1.01503 0.92954 0.91492 0.92162 0.92293 0.91303 0.77667 0.87486 0.87205 0.78236 0.78259 0.91135 0.88459 0.93555 0.90571 0.92629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 8.95 71.98 0.64 -1.78 16 2 C -0.10 -2.02 4.29 -10.27 -0.04 -2.06 16 3 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 4 C -0.15 -4.26 7.08 31.12 0.22 -4.04 16 5 C 0.13 4.06 3.86 45.51 0.18 4.24 16 6 H 0.09 2.91 6.25 -2.39 -0.01 2.89 16 7 N -0.75 -29.23 5.44 -316.49 -1.72 -30.95 16 8 C 0.17 8.34 6.64 38.14 0.25 8.59 16 9 C -0.26 -11.79 9.25 22.56 0.21 -11.58 16 10 C -0.16 -7.21 9.86 22.35 0.22 -6.99 16 11 C 0.07 3.30 6.79 38.97 0.26 3.56 16 12 N -0.88 -36.20 8.98 -50.31 -0.45 -36.66 16 13 C 0.06 3.34 5.58 -21.18 -0.12 3.22 16 14 C -0.49 -26.80 8.50 23.35 0.20 -26.60 16 15 H 0.07 3.79 6.67 -2.91 -0.02 3.78 16 16 C 0.03 1.70 5.18 85.23 0.44 2.14 16 17 N -0.83 -45.43 10.88 21.82 0.24 -45.19 16 18 Si 0.98 39.75 29.59 68.60 2.03 41.78 16 19 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 20 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 21 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 22 C -0.23 -12.44 8.50 22.81 0.19 -12.24 16 23 C -0.11 -2.66 4.44 -10.27 -0.05 -2.70 16 24 H 0.08 1.83 8.14 -2.39 -0.02 1.82 16 25 C -0.13 -3.08 7.56 71.98 0.54 -2.54 16 26 H 0.05 1.00 6.43 -2.38 -0.02 0.98 16 27 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.07 2.07 7.53 -2.38 -0.02 2.06 16 31 H 0.39 15.02 6.58 -92.71 -0.61 14.41 16 32 H 0.11 4.31 6.07 -2.91 -0.02 4.29 16 33 H 0.11 4.34 8.06 -2.91 -0.02 4.32 16 34 H 0.39 13.25 8.83 -92.71 -0.82 12.43 16 35 H 0.39 15.88 7.04 -92.71 -0.65 15.23 16 36 H 0.28 13.92 8.30 -92.71 -0.77 13.15 16 37 H 0.10 5.61 6.15 -2.91 -0.02 5.59 16 38 H 0.05 1.21 7.04 -2.38 -0.02 1.19 16 39 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.05 1.34 6.08 -2.39 -0.01 1.32 16 Total: -1.00 -61.32 312.59 2.25 -59.08 By element: Atomic # 1 Polarization: 61.73 SS G_CDS: -1.00 Total: 60.73 kcal Atomic # 6 Polarization: -51.94 SS G_CDS: 3.16 Total: -48.78 kcal Atomic # 7 Polarization: -110.86 SS G_CDS: -1.94 Total: -112.80 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 2.03 Total: 41.78 kcal Total: -61.32 2.25 -59.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385595199.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.058 kcal (2) G-P(sol) polarization free energy of solvation -61.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds