Wall clock time and date at job start Mon Mar 30 2020 06:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47903 * 111.00114 * 2 1 4 4 C 1.53993 * 107.05710 * 145.84396 * 3 2 1 5 5 C 1.54587 * 105.14127 * 358.77614 * 4 3 2 6 6 C 1.49001 * 110.97364 * 117.44268 * 2 1 3 7 7 H 1.08997 * 110.68243 * 318.62486 * 6 2 1 8 8 C 1.53004 * 110.86381 * 81.89540 * 6 2 1 9 9 N 1.46504 * 109.47164 * 177.38104 * 8 6 2 10 10 C 1.38856 * 119.99686 * 184.25922 * 9 8 6 11 11 C 1.39570 * 119.84354 * 359.72609 * 10 9 8 12 12 C 1.36343 * 120.15623 * 179.71931 * 11 10 9 13 13 C 1.40878 * 119.84085 * 0.55077 * 12 11 10 14 14 C 1.41131 * 120.16106 * 179.70099 * 13 12 11 15 15 H 1.08003 * 120.00527 * 205.16087 * 14 13 12 16 16 C 1.39868 * 119.99824 * 25.15287 * 14 13 12 17 17 N 1.30903 * 119.99832 * 15.21528 * 16 14 13 18 18 Si 1.86797 * 120.00264 * 195.21673 * 16 14 13 19 19 H 1.48495 * 109.47060 * 59.99811 * 18 16 14 20 20 H 1.48496 * 109.47287 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47097 * 299.99901 * 18 16 14 22 22 C 1.40891 * 119.68626 * 359.72228 * 13 12 11 23 23 C 1.36337 * 119.83768 * 359.97438 * 22 13 12 24 24 H 1.09006 * 109.46832 * 55.30595 * 1 2 3 25 25 H 1.08997 * 109.46843 * 175.30671 * 1 2 3 26 26 H 1.08994 * 109.46812 * 295.30664 * 1 2 3 27 27 H 1.08998 * 109.91727 * 26.49325 * 3 2 1 28 28 H 1.09001 * 109.91661 * 265.20074 * 3 2 1 29 29 H 1.09001 * 110.30795 * 239.85581 * 4 3 2 30 30 H 1.09001 * 110.30424 * 117.69413 * 4 3 2 31 31 H 1.09007 * 110.72678 * 96.39730 * 5 4 3 32 32 H 1.08993 * 110.72923 * 219.50440 * 5 4 3 33 33 H 1.09001 * 109.47117 * 297.38031 * 8 6 2 34 34 H 1.09000 * 109.47279 * 57.37918 * 8 6 2 35 35 H 0.96992 * 120.00012 * 4.25420 * 9 8 6 36 36 H 1.07997 * 119.92002 * 359.97438 * 11 10 9 37 37 H 1.08004 * 120.07654 * 180.27552 * 12 11 10 38 38 H 0.97002 * 119.99973 * 179.97438 * 17 16 14 39 39 H 1.08004 * 120.07917 * 179.97438 * 22 13 12 40 40 H 1.07999 * 119.92381 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3808 0.0000 4 6 3.2983 1.3659 0.8266 5 6 3.4492 -0.0929 1.3154 6 6 2.0024 -0.6412 1.2347 7 1 1.4257 -0.3349 2.1074 8 6 2.0092 -2.1651 1.0980 9 7 2.5959 -2.7607 2.3011 10 6 2.7908 -4.1337 2.3717 11 6 2.4212 -4.9439 1.2969 12 6 2.6148 -6.2921 1.3571 13 6 3.1788 -6.8684 2.5123 14 6 3.3765 -8.2640 2.5844 15 1 3.4119 -8.7555 3.5454 16 6 3.5264 -9.0105 1.4112 17 7 3.7816 -8.4057 0.2786 18 14 3.3623 -10.8706 1.4603 19 1 2.0076 -11.2353 1.9470 20 1 3.5637 -11.4215 0.0961 21 1 4.3859 -11.4338 2.3770 22 6 3.5442 -6.0450 3.5956 23 6 3.3505 -4.6977 3.5191 24 1 -0.3633 0.5850 -0.8450 25 1 -0.3633 -1.0242 -0.0841 26 1 -0.3633 0.4393 0.9290 27 1 1.2759 2.0561 0.4571 28 1 2.2122 1.6967 -1.0212 29 1 3.2137 2.0429 1.6766 30 1 4.1470 1.6454 0.2023 31 1 4.1116 -0.6541 0.6561 32 1 3.8153 -0.1200 2.3416 33 1 0.9870 -2.5236 0.9766 34 1 2.5997 -2.4491 0.2269 35 1 2.8483 -2.1960 3.0481 36 1 1.9845 -4.5012 0.4139 37 1 2.3325 -6.9173 0.5229 38 1 3.8859 -8.9234 -0.5350 39 1 3.9767 -6.4801 4.4845 40 1 3.6297 -4.0652 4.3488 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000386647390.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:11 Heat of formation + Delta-G solvation = 7.556205 kcal Electronic energy + Delta-G solvation = -18910.416557 eV Core-core repulsion = 16109.526732 eV Total energy + Delta-G solvation = -2800.889826 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.34282 -39.47867 -36.63164 -34.79721 -33.06546 -31.67188 -31.33471 -29.61607 -26.88044 -26.31712 -25.17909 -22.99851 -22.07413 -21.58943 -21.04103 -19.13749 -17.88594 -17.22475 -16.78785 -16.49847 -15.84886 -15.53475 -15.37602 -15.13789 -14.57914 -14.46943 -14.24497 -13.94534 -13.71812 -13.42160 -13.23203 -12.97578 -12.72373 -12.69386 -12.36277 -12.28680 -12.23421 -12.13731 -11.76819 -11.57345 -11.46702 -11.16071 -11.05559 -10.27973 -9.43812 -9.39400 -8.50724 -8.15850 -6.00849 1.12313 1.20439 1.40854 1.52139 1.60830 2.28619 2.59696 2.87059 3.32695 3.64016 3.71485 3.86653 4.02447 4.18809 4.25299 4.45128 4.45529 4.50460 4.51917 4.54063 4.73820 4.79903 4.92141 5.00425 5.01669 5.02560 5.06019 5.15447 5.19139 5.28804 5.29802 5.47099 5.68299 5.81293 5.89817 5.98607 6.06100 6.20263 6.40117 6.67415 6.87315 7.09829 7.15771 7.32879 8.50937 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.039111 B = 0.003740 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.739250 B = 7485.695119 C = 7798.463218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.536 5.536 3 C 0.036 3.964 4 C -0.127 4.127 5 C -0.117 4.117 6 C 0.064 3.936 7 H 0.064 0.936 8 C 0.158 3.842 9 N -0.746 5.746 10 C 0.114 3.886 11 C -0.176 4.176 12 C -0.143 4.143 13 C 0.034 3.966 14 C -0.506 4.506 15 H 0.069 0.931 16 C 0.029 3.971 17 N -0.845 5.845 18 Si 0.979 3.021 19 H -0.263 1.263 20 H -0.271 1.271 21 H -0.262 1.262 22 C -0.194 4.194 23 C -0.164 4.164 24 H 0.081 0.919 25 H 0.061 0.939 26 H 0.035 0.965 27 H 0.056 0.944 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.035 0.965 34 H 0.039 0.961 35 H 0.397 0.603 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.281 0.719 39 H 0.099 0.901 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.770 17.533 -0.042 17.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.260 5.260 3 C -0.091 4.091 4 C -0.165 4.165 5 C -0.155 4.155 6 C -0.045 4.045 7 H 0.082 0.918 8 C 0.033 3.967 9 N -0.382 5.382 10 C 0.014 3.986 11 C -0.198 4.198 12 C -0.163 4.163 13 C 0.031 3.969 14 C -0.537 4.537 15 H 0.087 0.913 16 C -0.182 4.182 17 N -0.473 5.473 18 Si 0.800 3.200 19 H -0.187 1.187 20 H -0.195 1.195 21 H -0.186 1.186 22 C -0.214 4.214 23 C -0.187 4.187 24 H 0.100 0.900 25 H 0.080 0.920 26 H 0.053 0.947 27 H 0.074 0.926 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.231 0.769 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.092 0.908 39 H 0.117 0.883 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.655 17.244 -0.953 17.653 hybrid contribution -0.230 -0.508 0.687 0.885 sum -3.885 16.736 -0.266 17.183 Atomic orbital electron populations 1.22563 0.87014 1.02446 1.01316 1.64637 1.09059 1.16018 1.36333 1.22914 0.96249 0.88639 1.01304 1.22409 0.97788 0.96165 1.00100 1.22482 0.94960 0.96169 1.01936 1.22899 0.96709 0.92890 0.91980 0.91822 1.20757 0.96454 0.91728 0.87770 1.43723 1.72767 1.02883 1.18825 1.17433 1.02436 0.84117 0.94602 1.20242 1.07713 0.93872 0.98019 1.20914 1.01943 0.93874 0.99565 1.17820 0.92650 0.93935 0.92476 1.19599 1.47153 0.93207 0.93776 0.91301 1.26631 0.91760 1.05481 0.94311 1.69911 1.37020 1.39634 1.00773 0.85312 0.79749 0.76633 0.78284 1.18749 1.19526 1.18603 1.20777 1.07177 0.93517 0.99908 1.20099 1.06418 0.94776 0.97364 0.90035 0.91999 0.94655 0.92597 0.89823 0.90009 0.90238 0.92198 0.90117 0.94637 0.94244 0.76858 0.88305 0.88178 0.90842 0.88314 0.86177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.30 127.69 1.19 1.47 16 2 N -0.54 -11.65 5.26 -883.02 -4.65 -16.29 16 3 C 0.04 0.61 6.69 86.45 0.58 1.19 16 4 C -0.13 -1.98 6.93 31.47 0.22 -1.77 16 5 C -0.12 -2.42 6.10 31.80 0.19 -2.22 16 6 C 0.06 1.46 2.43 45.17 0.11 1.57 16 7 H 0.06 1.37 7.90 -2.39 -0.02 1.35 16 8 C 0.16 4.81 4.60 86.38 0.40 5.21 16 9 N -0.75 -24.91 5.49 -338.97 -1.86 -26.77 16 10 C 0.11 4.93 6.67 38.67 0.26 5.19 16 11 C -0.18 -8.61 9.21 22.15 0.20 -8.40 16 12 C -0.14 -7.95 8.63 22.47 0.19 -7.76 16 13 C 0.03 1.93 5.58 -21.27 -0.12 1.81 16 14 C -0.51 -28.91 9.04 23.38 0.21 -28.70 16 15 H 0.07 3.79 7.89 -2.91 -0.02 3.77 16 16 C 0.03 1.58 5.19 85.23 0.44 2.02 16 17 N -0.84 -47.17 10.83 21.82 0.24 -46.93 16 18 Si 0.98 40.79 29.59 68.60 2.03 42.82 16 19 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 20 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 21 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 22 C -0.19 -9.80 9.74 22.48 0.22 -9.58 16 23 C -0.16 -7.26 9.82 22.15 0.22 -7.04 16 24 H 0.08 1.27 8.13 -2.38 -0.02 1.25 16 25 H 0.06 1.28 7.69 -2.39 -0.02 1.27 16 26 H 0.03 0.60 7.96 -2.39 -0.02 0.58 16 27 H 0.06 0.79 7.77 -2.39 -0.02 0.77 16 28 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.06 1.48 8.05 -2.38 -0.02 1.46 16 32 H 0.08 1.50 8.13 -2.39 -0.02 1.48 16 33 H 0.04 1.14 7.63 -2.39 -0.02 1.12 16 34 H 0.04 1.37 7.71 -2.39 -0.02 1.35 16 35 H 0.40 11.18 8.30 -92.71 -0.77 10.41 16 36 H 0.10 4.50 6.68 -2.91 -0.02 4.48 16 37 H 0.10 5.88 6.09 -2.91 -0.02 5.87 16 38 H 0.28 14.36 8.30 -92.71 -0.77 13.59 16 39 H 0.10 4.70 8.06 -2.91 -0.02 4.68 16 40 H 0.12 4.42 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -63.06 321.20 0.32 -62.74 By element: Atomic # 1 Polarization: 31.20 SS G_CDS: 0.25 Total: 31.45 kcal Atomic # 6 Polarization: -51.32 SS G_CDS: 4.31 Total: -47.01 kcal Atomic # 7 Polarization: -83.73 SS G_CDS: -6.27 Total: -90.00 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.82 kcal Total: -63.06 0.32 -62.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386647390.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.298 kcal (2) G-P(sol) polarization free energy of solvation -63.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds