Wall clock time and date at job start Mon Mar 30 2020 07:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 119.99478 * 2 1 4 4 H 1.48508 * 109.47122 * 269.99998 * 3 2 1 5 5 H 1.48501 * 109.47335 * 30.00164 * 3 2 1 6 6 H 1.48496 * 109.47223 * 150.00327 * 3 2 1 7 7 C 1.37868 * 120.00255 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99977 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00134 * 180.02562 * 7 2 1 10 10 O 1.42901 * 109.47372 * 179.97438 * 9 7 2 11 11 C 1.42895 * 113.99948 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47036 * 179.97438 * 11 10 9 13 13 N 1.46498 * 109.46687 * 65.00210 * 12 11 10 14 14 C 1.40932 * 120.00026 * 180.02562 * 13 12 11 15 15 C 1.38784 * 122.61520 * 359.73520 * 14 13 12 16 16 C 1.33412 * 114.88494 * 179.76301 * 15 14 13 17 17 S 1.75858 * 109.70335 * 0.47789 * 16 15 14 18 18 C 1.33818 * 122.62526 * 180.02562 * 14 13 12 19 19 Cl 1.73599 * 125.19562 * 0.02562 * 18 14 13 20 20 H 0.97000 * 120.00472 * 359.97438 * 1 2 3 21 21 H 1.08995 * 109.46887 * 59.99374 * 9 7 2 22 22 H 1.09003 * 109.46932 * 299.99824 * 9 7 2 23 23 H 1.09001 * 109.46798 * 60.00190 * 11 10 9 24 24 H 1.08993 * 109.47318 * 299.99656 * 11 10 9 25 25 H 1.08992 * 109.47046 * 185.00128 * 12 11 10 26 26 H 1.08997 * 109.47395 * 305.00669 * 12 11 10 27 27 H 0.97004 * 120.00552 * 359.97438 * 13 12 11 28 28 H 1.07995 * 122.55630 * 359.97438 * 15 14 13 29 29 H 1.07997 * 125.14820 * 180.20664 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 8 3.9881 -2.5412 -0.0001 11 6 5.4126 -2.6539 -0.0001 12 6 5.8072 -4.1322 0.0004 13 7 5.3691 -4.7549 -1.2512 14 6 5.6207 -6.1219 -1.4840 15 6 6.2832 -6.9271 -0.5681 16 6 6.4337 -8.1983 -0.9439 17 16 5.7281 -8.4330 -2.5375 18 6 5.2446 -6.7436 -2.6077 19 17 4.4079 -5.9964 -3.9326 20 1 -0.4851 0.8400 0.0004 21 1 3.8746 -0.6806 0.8904 22 1 3.8753 -0.6795 -0.8895 23 1 5.8153 -2.1704 0.8899 24 1 5.8153 -2.1703 -0.8900 25 1 6.8899 -4.2191 0.0899 26 1 5.3314 -4.6350 0.8423 27 1 4.9051 -4.2266 -1.9194 28 1 6.6461 -6.5539 0.3782 29 1 6.9195 -8.9659 -0.3598 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000387395162.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:57 Heat of formation + Delta-G solvation = -38.685000 kcal Electronic energy + Delta-G solvation = -14673.143339 eV Core-core repulsion = 11941.183514 eV Total energy + Delta-G solvation = -2731.959825 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 261.033 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.88519 -38.67615 -37.38046 -35.41630 -34.67087 -31.32773 -29.92532 -28.16609 -24.52553 -24.03752 -23.31500 -20.11037 -19.13832 -18.92209 -17.71359 -17.53333 -16.72157 -16.41570 -15.55368 -15.31183 -14.77106 -14.67471 -14.58141 -14.27493 -14.09450 -13.60279 -13.26819 -12.97858 -12.58539 -12.47463 -12.29996 -11.96053 -11.84889 -11.56070 -11.40318 -10.95851 -10.80849 -10.41355 -9.47015 -8.39394 -8.26139 -6.47972 0.03878 0.41536 0.99069 1.31740 1.35061 1.45732 1.50836 1.84795 2.27287 2.63087 2.93233 3.03322 4.00982 4.08383 4.25879 4.32974 4.49193 4.58164 4.66533 4.80872 4.87153 4.98718 5.03551 5.20647 5.40973 5.89573 6.24768 6.56458 6.63959 6.70802 7.16473 8.77869 Molecular weight = 261.03amu Principal moments of inertia in cm(-1) A = 0.032016 B = 0.004218 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.361280 B = 6636.838633 C = 7106.016951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.010 3.990 3 Si 0.958 3.042 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.241 1.241 7 C -0.547 4.547 8 H 0.026 0.974 9 C 0.180 3.820 10 O -0.406 6.406 11 C 0.036 3.964 12 C 0.138 3.862 13 N -0.738 5.738 14 C 0.203 3.797 15 C -0.176 4.176 16 C -0.156 4.156 17 S 0.143 5.857 18 C -0.292 4.292 19 Cl -0.041 7.041 20 H 0.273 0.727 21 H 0.017 0.983 22 H 0.011 0.989 23 H 0.079 0.921 24 H 0.055 0.945 25 H 0.106 0.894 26 H 0.063 0.937 27 H 0.398 0.602 28 H 0.168 0.832 29 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.938 -14.030 -2.012 23.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.188 4.188 3 Si 0.779 3.221 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.164 1.164 7 C -0.585 4.585 8 H 0.045 0.955 9 C 0.105 3.895 10 O -0.325 6.325 11 C -0.041 4.041 12 C 0.014 3.986 13 N -0.370 5.370 14 C 0.088 3.912 15 C -0.210 4.210 16 C -0.292 4.292 17 S 0.401 5.599 18 C -0.441 4.441 19 Cl -0.013 7.013 20 H 0.082 0.918 21 H 0.035 0.965 22 H 0.029 0.971 23 H 0.097 0.903 24 H 0.073 0.927 25 H 0.124 0.876 26 H 0.082 0.918 27 H 0.233 0.767 28 H 0.185 0.815 29 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 18.522 -15.161 -2.882 24.109 hybrid contribution -0.561 2.451 0.352 2.539 sum 17.960 -12.711 -2.530 22.148 Atomic orbital electron populations 1.70045 1.08363 1.28809 1.51014 1.25894 0.95834 1.03579 0.93445 0.85571 0.79540 0.77273 0.79705 1.18610 1.19892 1.16438 1.21169 0.91178 0.93684 1.52431 0.95546 1.20313 0.93081 0.80900 0.95245 1.87916 1.21019 1.28295 1.95314 1.22925 0.82307 0.97026 1.01848 1.21480 1.00145 0.90716 0.86261 1.44828 1.64974 1.06081 1.21150 1.17110 0.95491 0.86200 0.92358 1.19884 1.05572 0.93506 1.02008 1.25981 1.04124 1.00437 0.98697 1.83989 1.56872 1.02894 1.16143 1.24291 1.22127 1.00009 0.97665 1.98312 1.76904 1.81161 1.44948 0.91810 0.96525 0.97139 0.90309 0.92676 0.87648 0.91830 0.76707 0.81489 0.77342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.79 13.96 21.45 0.30 -59.49 15 2 C 0.01 0.61 5.47 84.65 0.46 1.08 15 3 Si 0.96 43.06 27.47 68.60 1.88 44.94 15 4 H -0.26 -11.20 7.11 99.48 0.71 -10.49 15 5 H -0.27 -11.89 7.11 99.48 0.71 -11.18 15 6 H -0.24 -9.79 6.54 99.48 0.65 -9.14 15 7 C -0.55 -33.38 9.99 25.60 0.26 -33.12 15 8 H 0.03 1.83 8.06 -2.91 -0.02 1.81 15 9 C 0.18 8.83 4.76 71.24 0.34 9.17 15 10 O -0.41 -18.08 10.27 -148.98 -1.53 -19.61 15 11 C 0.04 1.08 6.07 71.98 0.44 1.52 15 12 C 0.14 3.40 5.52 86.38 0.48 3.88 15 13 N -0.74 -21.42 5.73 -342.55 -1.96 -23.38 15 14 C 0.20 5.38 6.61 36.80 0.24 5.63 15 15 C -0.18 -3.43 9.46 21.31 0.20 -3.23 15 16 C -0.16 -2.42 11.22 66.73 0.75 -1.67 15 17 S 0.14 2.86 23.33 -56.49 -1.32 1.54 15 18 C -0.29 -7.95 7.11 66.81 0.47 -7.47 15 19 Cl -0.04 -1.22 28.51 -2.72 -0.08 -1.30 15 20 H 0.27 15.85 8.31 -92.71 -0.77 15.08 15 21 H 0.02 0.78 7.20 -2.39 -0.02 0.77 15 22 H 0.01 0.50 7.57 -2.39 -0.02 0.49 15 23 H 0.08 2.03 8.14 -2.39 -0.02 2.01 15 24 H 0.06 1.56 8.14 -2.39 -0.02 1.54 15 25 H 0.11 1.81 8.13 -2.39 -0.02 1.79 15 26 H 0.06 1.61 8.14 -2.39 -0.02 1.59 15 27 H 0.40 13.19 7.80 -92.71 -0.72 12.47 15 28 H 0.17 2.49 7.39 -2.91 -0.02 2.47 15 29 H 0.21 1.54 8.06 -2.91 -0.02 1.52 15 Total: -1.00 -72.12 283.16 1.32 -70.79 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 0.39 Total: 10.72 kcal Atomic # 6 Polarization: -27.86 SS G_CDS: 3.64 Total: -24.22 kcal Atomic # 7 Polarization: -81.21 SS G_CDS: -1.66 Total: -82.87 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -1.53 Total: -19.61 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 1.88 Total: 44.94 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -1.32 Total: 1.54 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -0.08 Total: -1.30 kcal Total: -72.12 1.32 -70.79 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387395162.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.107 kcal (2) G-P(sol) polarization free energy of solvation -72.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds