Wall clock time and date at job start Mon Mar 30 2020 07:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30726 * 1 3 3 Si 1.86793 * 120.00369 * 2 1 4 4 H 1.48506 * 109.47401 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46996 * 299.99355 * 3 2 1 6 6 H 1.48498 * 109.47755 * 59.99990 * 3 2 1 7 7 C 1.40180 * 119.99380 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99877 * 180.02562 * 7 2 1 9 9 C 1.39877 * 120.00208 * 359.97438 * 7 2 1 10 10 N 1.30933 * 125.27625 * 359.97438 * 9 7 2 11 11 C 1.33031 * 116.58526 * 180.02562 * 10 9 7 12 12 C 1.37541 * 113.51231 * 359.97438 * 11 10 9 13 13 S 1.71165 * 109.83986 * 359.78645 * 12 11 10 14 14 C 1.51396 * 108.23572 * 180.02562 * 12 11 10 15 15 C 1.50729 * 105.83335 * 359.97438 * 14 12 11 16 16 C 1.37905 * 132.42540 * 180.02562 * 15 14 12 17 17 C 1.38375 * 119.95071 * 180.02562 * 16 15 14 18 18 C 1.38599 * 120.17823 * 359.92321 * 17 16 15 19 19 F 1.35102 * 119.90765 * 180.02562 * 18 17 16 20 20 C 1.38190 * 120.19369 * 0.03937 * 18 17 16 21 21 C 1.39025 * 107.27311 * 0.02562 * 15 14 12 22 22 H 0.97003 * 119.99495 * 0.02562 * 1 2 3 23 23 H 1.08996 * 110.17760 * 119.09070 * 14 12 11 24 24 H 1.08997 * 110.17583 * 240.90656 * 14 12 11 25 25 H 1.08000 * 120.03137 * 359.97438 * 16 15 14 26 26 H 1.08003 * 119.91283 * 179.97438 * 17 16 15 27 27 H 1.07991 * 120.13645 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6176 0.0000 4 1 3.7014 1.3462 -0.0006 5 1 1.8827 2.3963 -1.2126 6 1 1.8827 2.3964 1.2124 7 6 2.0080 -1.2141 0.0005 8 1 3.0881 -1.2142 0.0010 9 6 1.3086 -2.4254 0.0016 10 7 0.0048 -2.5457 0.0027 11 6 -0.4788 -3.7850 0.0042 12 6 0.4968 -4.7546 0.0037 13 16 2.0438 -4.0222 -0.0046 14 6 -0.1809 -6.1085 0.0049 15 6 -1.6617 -5.8271 0.0066 16 6 -2.7657 -6.6536 0.0086 17 6 -4.0372 -6.1078 0.0094 18 6 -4.2049 -4.7320 0.0098 19 9 -5.4489 -4.2049 0.0111 20 6 -3.1033 -3.8976 0.0086 21 6 -1.8195 -4.4459 0.0059 22 1 -0.4849 0.8401 -0.0004 23 1 0.0949 -6.6677 -0.8891 24 1 0.0964 -6.6669 0.8989 25 1 -2.6380 -7.7260 0.0087 26 1 -4.9014 -6.7556 0.0106 27 1 -3.2350 -2.8257 0.0085 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393841166.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:59 Heat of formation + Delta-G solvation = 2.009749 kcal Electronic energy + Delta-G solvation = -16046.068637 eV Core-core repulsion = 13194.846013 eV Total energy + Delta-G solvation = -2851.222623 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 261.032 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.92737 -41.25675 -38.71984 -36.04273 -34.45261 -32.20749 -30.22534 -28.87840 -26.62647 -24.12761 -23.68388 -22.24589 -20.83107 -18.75843 -18.38526 -17.75030 -17.01597 -16.66649 -16.50343 -16.34050 -15.67424 -15.06740 -14.85486 -14.51655 -14.36170 -13.96943 -13.76752 -13.07977 -12.89680 -12.85356 -12.73238 -12.64158 -12.15131 -11.97254 -11.55639 -11.36143 -10.38850 -9.83800 -9.64363 -9.51968 -8.96453 -8.58661 -6.65775 -0.18566 0.15765 0.71740 1.08666 1.40786 1.48653 1.56815 1.63148 2.17075 2.25024 2.77539 3.10775 3.29126 3.51029 3.54334 3.95902 4.02444 4.20129 4.44372 4.59466 4.77379 4.84503 4.94743 5.03460 5.08029 5.17615 5.32510 5.46090 5.62183 5.89639 6.01857 6.25787 6.55458 7.88101 8.22793 Molecular weight = 261.03amu Principal moments of inertia in cm(-1) A = 0.024576 B = 0.006380 C = 0.005079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.049257 B = 4387.742493 C = 5511.597131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.754 5.754 2 C 0.025 3.975 3 Si 1.007 2.993 4 H -0.242 1.242 5 H -0.264 1.264 6 H -0.264 1.264 7 C -0.414 4.414 8 H 0.113 0.887 9 C 0.201 3.799 10 N -0.563 5.563 11 C 0.089 3.911 12 C -0.405 4.405 13 S -0.011 6.011 14 C 0.035 3.965 15 C -0.099 4.099 16 C -0.055 4.055 17 C -0.139 4.139 18 C 0.085 3.915 19 F -0.145 7.145 20 C -0.153 4.153 21 C -0.016 4.016 22 H 0.289 0.711 23 H 0.105 0.895 24 H 0.105 0.895 25 H 0.185 0.815 26 H 0.179 0.821 27 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.020 -8.684 0.011 9.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.376 5.376 2 C -0.201 4.201 3 Si 0.824 3.176 4 H -0.165 1.165 5 H -0.189 1.189 6 H -0.188 1.188 7 C -0.458 4.458 8 H 0.131 0.869 9 C -0.053 4.053 10 N -0.283 5.283 11 C -0.047 4.047 12 C -0.530 4.530 13 S 0.250 5.750 14 C -0.004 4.004 15 C -0.102 4.102 16 C -0.073 4.073 17 C -0.157 4.157 18 C 0.066 3.934 19 F -0.124 7.124 20 C -0.173 4.173 21 C -0.019 4.019 22 H 0.100 0.900 23 H 0.122 0.878 24 H 0.122 0.878 25 H 0.202 0.798 26 H 0.196 0.804 27 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.479 -8.509 0.002 8.863 hybrid contribution -0.929 1.275 0.007 1.578 sum -3.408 -7.234 0.008 7.996 Atomic orbital electron populations 1.70143 1.09659 1.30526 1.27303 1.27232 0.95758 1.04878 0.92185 0.84798 0.79572 0.74175 0.79037 1.16456 1.18850 1.18842 1.19547 0.95683 0.88432 1.42098 0.86905 1.24421 0.89022 0.94989 0.96891 1.66971 1.10560 1.19711 1.31029 1.20968 0.94085 0.88498 1.01173 1.25803 0.96251 1.02397 1.28505 1.82390 1.07908 1.05476 1.79268 1.18692 0.87431 0.90916 1.03359 1.20629 0.96746 0.92034 1.00769 1.20634 0.88293 1.01387 0.96958 1.21459 0.99941 0.91637 1.02690 1.17578 0.78233 0.92802 1.04769 1.91462 1.39111 1.87527 1.94252 1.20861 0.91503 1.00074 1.04894 1.18942 0.89112 0.94248 0.99580 0.90027 0.87754 0.87751 0.79816 0.80390 0.87343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.95 11.86 21.87 0.26 -40.69 15 2 C 0.03 1.24 5.50 85.33 0.47 1.71 15 3 Si 1.01 36.00 29.56 68.60 2.03 38.03 15 4 H -0.24 -8.00 7.11 99.48 0.71 -7.30 15 5 H -0.26 -9.13 7.11 99.48 0.71 -8.42 15 6 H -0.26 -9.12 7.11 99.48 0.71 -8.42 15 7 C -0.41 -21.73 9.38 23.14 0.22 -21.52 15 8 H 0.11 5.30 7.85 -2.91 -0.02 5.28 15 9 C 0.20 11.25 7.04 85.22 0.60 11.85 15 10 N -0.56 -33.51 8.73 -181.96 -1.59 -35.10 15 11 C 0.09 4.72 7.73 41.83 0.32 5.04 15 12 C -0.41 -19.02 7.41 25.74 0.19 -18.83 15 13 S -0.01 -0.51 23.14 -56.49 -1.31 -1.82 15 14 C 0.03 1.19 6.74 29.33 0.20 1.39 15 15 C -0.10 -3.38 6.31 -19.75 -0.12 -3.50 15 16 C -0.06 -1.32 10.04 22.22 0.22 -1.10 15 17 C -0.14 -3.38 10.03 22.39 0.22 -3.16 15 18 C 0.09 2.82 7.29 22.34 0.16 2.98 15 19 F -0.14 -4.70 17.26 44.97 0.78 -3.93 15 20 C -0.15 -6.38 10.08 22.59 0.23 -6.15 15 21 C -0.02 -0.72 6.20 -19.73 -0.12 -0.84 15 22 H 0.29 14.03 8.29 -92.71 -0.77 13.26 15 23 H 0.10 3.08 8.14 -2.39 -0.02 3.07 15 24 H 0.10 3.09 8.14 -2.39 -0.02 3.07 15 25 H 0.18 2.56 8.06 -2.91 -0.02 2.53 15 26 H 0.18 2.82 8.06 -2.91 -0.02 2.80 15 27 H 0.11 4.96 8.06 -2.92 -0.02 4.94 15 Total: -1.00 -68.81 262.22 3.98 -64.83 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: 1.22 Total: 10.80 kcal Atomic # 6 Polarization: -34.71 SS G_CDS: 2.59 Total: -32.12 kcal Atomic # 7 Polarization: -74.46 SS G_CDS: -1.33 Total: -75.79 kcal Atomic # 9 Polarization: -4.70 SS G_CDS: 0.78 Total: -3.93 kcal Atomic # 14 Polarization: 36.00 SS G_CDS: 2.03 Total: 38.03 kcal Atomic # 16 Polarization: -0.51 SS G_CDS: -1.31 Total: -1.82 kcal Total: -68.81 3.98 -64.83 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393841166.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.841 kcal (2) G-P(sol) polarization free energy of solvation -68.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds