Wall clock time and date at job start Mon Mar 30 2020 07:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43209 * 179.97438 * 2 1 4 4 C 1.39299 * 119.80499 * 178.86100 * 3 2 1 5 5 C 1.40810 * 120.81190 * 180.02562 * 4 3 2 6 6 C 1.45916 * 128.99393 * 180.02562 * 5 4 3 7 7 S 1.76191 * 122.65120 * 359.95345 * 6 5 4 8 8 C 1.32425 * 114.69521 * 179.97438 * 6 5 4 9 9 S 1.75256 * 111.37276 * 359.97438 * 8 6 5 10 10 C 1.39639 * 119.21122 * 359.95119 * 5 4 3 11 11 C 1.42330 * 119.88115 * 0.02573 * 10 5 4 12 12 C 1.40989 * 120.00843 * 179.97438 * 11 10 5 13 13 H 1.08003 * 119.99693 * 334.35440 * 12 11 10 14 14 C 1.39789 * 119.99936 * 154.34736 * 12 11 10 15 15 N 1.30941 * 120.00045 * 342.51111 * 14 12 11 16 16 Si 1.86798 * 119.99572 * 162.51188 * 14 12 11 17 17 H 1.48498 * 109.47459 * 60.00440 * 16 14 12 18 18 H 1.48507 * 109.46848 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47169 * 299.99648 * 16 14 12 20 20 C 1.39343 * 119.80881 * 358.83348 * 3 2 1 21 21 H 1.08003 * 119.59251 * 359.97224 * 4 3 2 22 22 H 1.34502 * 102.99972 * 90.00123 * 7 6 5 23 23 H 1.08003 * 124.30971 * 180.02562 * 8 6 5 24 24 H 0.96999 * 120.00147 * 179.97438 * 15 14 12 25 25 H 1.08006 * 120.13905 * 359.97438 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2599 1.2094 -0.0240 5 6 4.6677 1.2348 -0.0251 6 6 5.5653 2.3850 -0.0475 7 16 4.9804 4.0467 -0.0804 8 6 6.8542 2.0812 -0.0416 9 16 7.1014 0.3465 -0.0071 10 6 5.3711 0.0287 -0.0006 11 6 4.6621 -1.2052 0.0244 12 6 5.3695 -2.4245 0.0486 13 1 6.3697 -2.4766 -0.3556 14 6 4.7764 -3.5659 0.5960 15 7 3.7348 -3.4501 1.3809 16 14 5.4700 -5.2563 0.2074 17 1 6.8805 -5.3301 0.6659 18 1 4.6673 -6.2929 0.9051 19 1 5.4128 -5.4899 -1.2579 20 6 3.2613 -1.2079 0.0246 21 1 2.7096 2.1386 -0.0430 22 1 4.8797 4.3579 1.2242 23 1 7.6515 2.8097 -0.0555 24 1 3.3231 -4.2421 1.7604 25 1 2.7208 -2.1428 0.0441 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396208128.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:41 Heat of formation + Delta-G solvation = 49.591920 kcal Electronic energy + Delta-G solvation = -13988.762232 eV Core-core repulsion = 11569.983008 eV Total energy + Delta-G solvation = -2418.779224 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.06761 -37.63961 -36.60895 -34.87326 -32.14426 -30.15410 -27.48665 -24.97012 -23.58722 -22.50740 -19.82586 -18.40043 -18.20194 -17.99439 -16.84300 -16.45905 -15.93988 -15.24760 -14.93089 -14.81579 -14.47679 -14.16543 -13.81582 -13.48715 -13.40160 -12.93051 -12.86631 -12.63753 -12.25084 -12.09467 -11.87765 -11.42576 -11.28467 -11.10778 -10.12266 -9.26744 -9.03836 -8.81458 -8.60782 -6.43163 -0.04493 0.11451 0.40843 1.02190 1.16694 1.40457 1.44984 1.53438 1.63759 1.69263 1.99746 2.17397 2.19853 2.74467 3.08114 3.47773 3.88420 4.45635 4.60601 4.71103 4.84947 5.06834 5.12650 5.27552 5.48646 5.70129 5.78129 5.98828 6.32344 6.53579 6.69845 6.71879 8.18086 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.018540 B = 0.008232 C = 0.005808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.870226 B = 3400.432521 C = 4819.681207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C 0.291 3.709 3 C -0.005 4.005 4 C -0.164 4.164 5 C -0.035 4.035 6 C -0.132 4.132 7 S -0.094 6.094 8 C -0.128 4.128 9 S 0.120 5.880 10 C -0.227 4.227 11 C 0.124 3.876 12 C -0.469 4.469 13 H 0.090 0.910 14 C 0.042 3.958 15 N -0.809 5.809 16 Si 0.978 3.022 17 H -0.255 1.255 18 H -0.271 1.271 19 H -0.258 1.258 20 C -0.143 4.143 21 H 0.127 0.873 22 H 0.074 0.926 23 H 0.205 0.795 24 H 0.294 0.706 25 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.965 5.173 -1.404 9.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.022 4.022 3 C -0.009 4.009 4 C -0.189 4.189 5 C -0.044 4.044 6 C -0.259 4.259 7 S 0.061 5.939 8 C -0.266 4.266 9 S 0.384 5.616 10 C -0.344 4.344 11 C 0.119 3.881 12 C -0.497 4.497 13 H 0.108 0.892 14 C -0.176 4.176 15 N -0.433 5.433 16 Si 0.798 3.202 17 H -0.179 1.179 18 H -0.195 1.195 19 H -0.182 1.182 20 C -0.169 4.169 21 H 0.145 0.855 22 H 0.038 0.962 23 H 0.222 0.778 24 H 0.105 0.895 25 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 7.086 5.012 -1.463 8.802 hybrid contribution -0.689 -0.833 1.119 1.556 sum 6.397 4.179 -0.344 7.649 Atomic orbital electron populations 1.81066 1.12681 1.09882 1.11598 1.26095 0.92951 0.91439 0.91755 1.15748 0.82964 0.95278 1.06951 1.20247 0.91510 0.95546 1.11549 1.18895 0.93436 0.90645 1.01404 1.20904 0.94524 0.95505 1.14924 1.85492 1.88953 1.07663 1.11814 1.26068 0.99391 1.00420 1.00696 1.83620 1.02973 0.98213 1.76829 1.23079 0.96944 0.96602 1.17773 1.17026 0.91216 0.90638 0.89248 1.19722 1.02383 0.93306 1.34334 0.89202 1.26712 0.94234 1.05038 0.91598 1.69864 1.18779 1.34190 1.20459 0.85274 0.79549 0.75413 0.79914 1.17867 1.19542 1.18180 1.21088 0.93725 0.95189 1.06942 0.85468 0.96173 0.77785 0.89471 0.86445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -20.62 18.54 19.01 0.35 -20.27 15 2 C 0.29 12.43 15.29 88.33 1.35 13.78 15 3 C 0.00 -0.20 5.71 -21.51 -0.12 -0.33 15 4 C -0.16 -6.66 9.54 23.15 0.22 -6.44 15 5 C -0.03 -1.39 6.02 -20.32 -0.12 -1.51 15 6 C -0.13 -4.36 6.21 23.14 0.14 -4.21 15 7 S -0.09 -2.58 25.69 -56.49 -1.45 -4.03 15 8 C -0.13 -3.66 10.83 66.71 0.72 -2.94 15 9 S 0.12 4.05 22.79 -56.49 -1.29 2.76 15 10 C -0.23 -9.68 6.37 23.63 0.15 -9.53 15 11 C 0.12 5.90 5.58 -21.14 -0.12 5.78 15 12 C -0.47 -21.87 8.80 23.32 0.21 -21.67 15 13 H 0.09 3.98 7.74 -2.91 -0.02 3.96 15 14 C 0.04 1.88 5.12 85.20 0.44 2.31 15 15 N -0.81 -38.11 10.99 21.80 0.24 -37.87 15 16 Si 0.98 33.97 29.59 68.60 2.03 36.00 15 17 H -0.25 -8.51 7.11 99.48 0.71 -7.80 15 18 H -0.27 -9.12 7.11 99.48 0.71 -8.42 15 19 H -0.26 -8.81 7.11 99.48 0.71 -8.11 15 20 C -0.14 -6.82 8.35 22.98 0.19 -6.62 15 21 H 0.13 4.68 7.95 -2.91 -0.02 4.65 15 22 H 0.07 1.90 9.07 73.35 0.67 2.56 15 23 H 0.21 4.10 8.06 -2.91 -0.02 4.08 15 24 H 0.29 12.67 8.30 -92.71 -0.77 11.90 15 25 H 0.12 5.87 6.19 -2.91 -0.02 5.86 15 Total: -1.00 -50.98 264.06 4.87 -46.11 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: 1.93 Total: 8.68 kcal Atomic # 6 Polarization: -34.43 SS G_CDS: 3.06 Total: -31.37 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: 0.59 Total: -58.14 kcal Atomic # 14 Polarization: 33.97 SS G_CDS: 2.03 Total: 36.00 kcal Atomic # 16 Polarization: 1.46 SS G_CDS: -2.74 Total: -1.27 kcal Total: -50.98 4.87 -46.11 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396208128.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.699 kcal (2) G-P(sol) polarization free energy of solvation -50.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds