Wall clock time and date at job start Mon Mar 30 2020 07:28:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13598 * 1
3 3 C 1.43205 * 179.97438 * 2 1
4 4 C 1.39675 * 119.86481 * 293.77596 * 3 2 1
5 5 C 1.37825 * 120.19521 * 180.02562 * 4 3 2
6 6 C 1.38438 * 120.62405 * 359.97438 * 5 4 3
7 7 S 1.76197 * 119.75566 * 179.97438 * 6 5 4
8 8 C 1.42761 * 120.49260 * 359.96174 * 6 5 4
9 9 C 1.39543 * 128.43516 * 179.97438 * 8 6 5
10 10 C 1.37043 * 115.05505 * 180.02562 * 9 8 6
11 11 C 1.39873 * 124.86478 * 180.02562 * 10 9 8
12 12 H 1.07992 * 120.00439 * 351.70464 * 11 10 9
13 13 C 1.40078 * 119.99714 * 171.70564 * 11 10 9
14 14 N 1.30844 * 119.99594 * 351.82000 * 13 11 10
15 15 Si 1.86794 * 119.99890 * 171.82560 * 13 11 10
16 16 H 1.48500 * 109.46880 * 265.02241 * 15 13 11
17 17 H 1.48497 * 109.47272 * 25.02330 * 15 13 11
18 18 H 1.48497 * 109.47014 * 145.02551 * 15 13 11
19 19 S 1.75464 * 110.26485 * 0.26158 * 10 9 8
20 20 C 1.40124 * 118.60955 * 0.02562 * 8 6 5
21 21 H 1.08001 * 119.90583 * 0.02562 * 4 3 2
22 22 H 1.08000 * 119.68900 * 179.97438 * 5 4 3
23 23 H 1.41009 * 100.00049 * 269.98171 * 7 6 5
24 24 H 1.07995 * 122.47240 * 0.03751 * 9 8 6
25 25 H 0.97000 * 119.99259 * 180.02562 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.5680 0.0006 0.0000
4 6 3.2638 -0.4874 1.1085
5 6 4.6420 -0.4895 1.1159
6 6 5.3538 -0.0105 0.0295
7 16 7.1154 -0.0233 0.0638
8 6 4.6713 0.4935 -1.1186
9 6 5.2165 1.0118 -2.2939
10 6 4.3005 1.4215 -3.2273
11 6 4.6198 1.9702 -4.4736
12 1 5.6439 2.2213 -4.7068
13 6 3.6110 2.1940 -5.4194
14 7 2.4008 1.7457 -5.2036
15 14 3.9935 3.1322 -6.9887
16 1 3.6495 4.5651 -6.8050
17 1 5.4399 3.0065 -7.3005
18 1 3.1951 2.5710 -8.1080
19 16 2.6700 1.1651 -2.6319
20 6 3.2700 0.4927 -1.1202
21 1 2.7202 -0.8642 1.9622
22 1 5.1717 -0.8684 1.9775
23 1 7.3586 1.2461 0.6274
24 1 6.2818 1.0846 -2.4560
25 1 1.7024 1.9004 -5.8587
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000396208230.mol2 25
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:28:53
Heat of formation + Delta-G solvation = 47.047592 kcal
Electronic energy + Delta-G solvation = -13878.584162 eV
Core-core repulsion = 11459.694607 eV
Total energy + Delta-G solvation = -2418.889554 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 260.998 amu
Computer time = 1.56 seconds
Orbital eigenvalues (eV)
-38.54690 -36.13143 -35.12783 -33.41342 -30.50753 -29.40289 -25.80444 -23.41390
-22.43089 -19.92454 -18.52394 -17.47672 -17.08423 -15.80041 -15.24131 -14.73389
-14.13767 -13.99343 -13.59105 -13.14520 -12.85841 -12.44087 -12.35686 -12.03444
-11.81282 -11.74632 -11.47220 -11.11752 -10.73117 -10.63937 -10.31132 -10.13014
-9.66180 -9.35636 -8.61298 -7.74180 -7.57799 -7.46344 -6.67130 -4.94572
1.04225 1.95634 2.38698 2.60702 2.72133 2.79684 2.87758 3.02340
3.14702 3.26260 3.38838 3.53675 3.74025 4.39148 4.50760 4.77417
5.59520 5.68278 6.14802 6.30062 6.39694 6.51115 6.72623 6.92775
7.03350 7.20087 7.40879 7.58793 7.68425 7.94372 7.99981 8.11641
9.36875
Molecular weight = 261.00amu
Principal moments of inertia in cm(-1)
A = 0.019942 B = 0.007790 C = 0.005633
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1403.734674 B = 3593.638693 C = 4969.214451
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.439 5.439
2 C 0.266 3.734
3 C 0.046 3.954
4 C -0.161 4.161
5 C -0.051 4.051
6 C -0.133 4.133
7 S -0.164 6.164
8 C 0.059 3.941
9 C -0.355 4.355
10 C 0.060 3.940
11 C -0.362 4.362
12 H 0.108 0.892
13 C 0.052 3.948
14 N -0.759 5.759
15 Si 0.940 3.060
16 H -0.261 1.261
17 H -0.253 1.253
18 H -0.268 1.268
19 S 0.137 5.863
20 C -0.218 4.218
21 H 0.121 0.879
22 H 0.124 0.876
23 H 0.081 0.919
24 H 0.125 0.875
25 H 0.306 0.694
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.509 0.344 2.206 4.159
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.115 5.115
2 C -0.048 4.048
3 C 0.037 3.963
4 C -0.186 4.186
5 C -0.075 4.075
6 C -0.248 4.248
7 S -0.007 6.007
8 C 0.048 3.952
9 C -0.379 4.379
10 C -0.059 4.059
11 C -0.395 4.395
12 H 0.125 0.875
13 C -0.172 4.172
14 N -0.383 5.383
15 Si 0.762 3.238
16 H -0.185 1.185
17 H -0.176 1.176
18 H -0.193 1.193
19 S 0.398 5.602
20 C -0.337 4.337
21 H 0.139 0.861
22 H 0.142 0.858
23 H 0.046 0.954
24 H 0.143 0.857
25 H 0.119 0.881
Dipole moment (debyes) X Y Z Total
from point charges 1.067 0.376 1.404 1.803
hybrid contribution 0.992 0.915 0.265 1.375
sum 2.059 1.291 1.669 2.948
Atomic orbital electron populations
1.81108 1.12199 1.09555 1.08671 1.26019 0.93004 0.93052 0.92757
1.15454 0.82889 1.03027 0.94918 1.20383 0.93655 1.07180 0.97365
1.20800 0.93145 0.96981 0.96556 1.20973 0.92997 1.13025 0.97761
1.86463 1.04007 1.25319 1.84901 1.17945 0.90412 0.93697 0.93119
1.19711 0.99132 1.23279 0.95794 1.21547 0.93996 0.93969 0.96413
1.19502 0.96695 1.28291 0.95013 0.87452 1.26475 0.94188 0.94358
1.02218 1.68863 1.02704 1.30653 1.36099 0.85700 0.80617 0.79597
0.77858 1.18534 1.17594 1.19299 1.85051 1.07492 1.65542 1.02105
1.23622 0.97142 1.11140 1.01781 0.86147 0.85816 0.95423 0.85742
0.88113
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.44 -9.06 18.54 41.84 0.78 -8.28 15
2 C 0.27 5.30 15.03 -22.47 -0.34 4.97 15
3 C 0.05 0.92 5.77 -106.36 -0.61 0.30 15
4 C -0.16 -2.75 9.72 -39.20 -0.38 -3.13 15
5 C -0.05 -0.87 9.70 -39.66 -0.38 -1.26 15
6 C -0.13 -2.58 6.21 -37.76 -0.23 -2.82 15
7 S -0.16 -2.83 25.13 -107.50 -2.70 -5.53 15
8 C 0.06 1.30 5.84 -106.96 -0.62 0.67 15
9 C -0.36 -8.19 9.68 -39.53 -0.38 -8.57 15
10 C 0.06 1.43 6.07 -39.40 -0.24 1.20 15
11 C -0.36 -8.13 9.25 -38.28 -0.35 -8.49 15
12 H 0.11 2.25 7.86 -52.49 -0.41 1.83 15
13 C 0.05 1.08 5.47 -17.28 -0.09 0.98 15
14 N -0.76 -16.61 10.77 55.56 0.60 -16.01 15
15 Si 0.94 15.51 29.57 -169.99 -5.03 10.48 15
16 H -0.26 -4.28 7.11 56.52 0.40 -3.88 15
17 H -0.25 -4.09 7.11 56.52 0.40 -3.69 15
18 H -0.27 -4.35 7.11 56.52 0.40 -3.95 15
19 S 0.14 3.18 19.97 -107.50 -2.15 1.04 15
20 C -0.22 -4.82 6.34 -37.81 -0.24 -5.06 15
21 H 0.12 1.70 8.06 -52.49 -0.42 1.28 15
22 H 0.12 1.73 8.06 -52.49 -0.42 1.30 15
23 H 0.08 1.30 9.55 96.90 0.93 2.22 15
24 H 0.12 2.79 7.76 -52.49 -0.41 2.38 15
25 H 0.31 5.97 8.30 -40.82 -0.34 5.63 15
LS Contribution 263.98 15.07 3.98 3.98
Total: -1.00 -24.13 263.98 -8.28 -32.41
By element:
Atomic # 1 Polarization: 3.00 SS G_CDS: 0.13 Total: 3.12 kcal
Atomic # 6 Polarization: -17.32 SS G_CDS: -3.89 Total: -21.21 kcal
Atomic # 7 Polarization: -25.66 SS G_CDS: 1.37 Total: -24.29 kcal
Atomic # 14 Polarization: 15.51 SS G_CDS: -5.03 Total: 10.48 kcal
Atomic # 16 Polarization: 0.35 SS G_CDS: -4.85 Total: -4.50 kcal
Total LS contribution 3.98 Total: 3.98 kcal
Total: -24.13 -8.28 -32.41 kcal
The number of atoms in the molecule is 25
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000396208230.mol2 25
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 79.458 kcal
(2) G-P(sol) polarization free energy of solvation -24.126 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.332 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.284 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.411 kcal
(6) G-S(sol) free energy of system = (1) + (5) 47.048 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.56 seconds