Wall clock time and date at job start Mon Mar 30 2020 07:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39675 * 119.86481 * 293.77596 * 3 2 1 5 5 C 1.37825 * 120.19521 * 180.02562 * 4 3 2 6 6 C 1.38438 * 120.62405 * 359.97438 * 5 4 3 7 7 S 1.76197 * 119.75566 * 179.97438 * 6 5 4 8 8 C 1.42761 * 120.49260 * 359.96174 * 6 5 4 9 9 C 1.39543 * 128.43516 * 179.97438 * 8 6 5 10 10 C 1.37043 * 115.05505 * 180.02562 * 9 8 6 11 11 C 1.39873 * 124.86478 * 180.02562 * 10 9 8 12 12 H 1.07992 * 120.00439 * 351.70464 * 11 10 9 13 13 C 1.40078 * 119.99714 * 171.70564 * 11 10 9 14 14 N 1.30844 * 119.99594 * 351.82000 * 13 11 10 15 15 Si 1.86794 * 119.99890 * 171.82560 * 13 11 10 16 16 H 1.48500 * 109.46880 * 265.02241 * 15 13 11 17 17 H 1.48497 * 109.47272 * 25.02330 * 15 13 11 18 18 H 1.48497 * 109.47014 * 145.02551 * 15 13 11 19 19 S 1.75464 * 110.26485 * 0.26158 * 10 9 8 20 20 C 1.40124 * 118.60955 * 0.02562 * 8 6 5 21 21 H 1.08001 * 119.90583 * 0.02562 * 4 3 2 22 22 H 1.08000 * 119.68900 * 179.97438 * 5 4 3 23 23 H 1.41009 * 100.00049 * 269.98171 * 7 6 5 24 24 H 1.07995 * 122.47240 * 0.03751 * 9 8 6 25 25 H 0.97000 * 119.99259 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2638 -0.4874 1.1085 5 6 4.6420 -0.4895 1.1159 6 6 5.3538 -0.0105 0.0295 7 16 7.1154 -0.0233 0.0638 8 6 4.6713 0.4935 -1.1186 9 6 5.2165 1.0118 -2.2939 10 6 4.3005 1.4215 -3.2273 11 6 4.6198 1.9702 -4.4736 12 1 5.6439 2.2213 -4.7068 13 6 3.6110 2.1940 -5.4194 14 7 2.4008 1.7457 -5.2036 15 14 3.9935 3.1322 -6.9887 16 1 3.6495 4.5651 -6.8050 17 1 5.4399 3.0065 -7.3005 18 1 3.1951 2.5710 -8.1080 19 16 2.6700 1.1651 -2.6319 20 6 3.2700 0.4927 -1.1202 21 1 2.7202 -0.8642 1.9622 22 1 5.1717 -0.8684 1.9775 23 1 7.3586 1.2461 0.6274 24 1 6.2818 1.0846 -2.4560 25 1 1.7024 1.9004 -5.8587 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396208230.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:53 Heat of formation + Delta-G solvation = 47.047592 kcal Electronic energy + Delta-G solvation = -13878.584162 eV Core-core repulsion = 11459.694607 eV Total energy + Delta-G solvation = -2418.889554 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -38.54690 -36.13143 -35.12783 -33.41342 -30.50753 -29.40289 -25.80444 -23.41390 -22.43089 -19.92454 -18.52394 -17.47672 -17.08423 -15.80041 -15.24131 -14.73389 -14.13767 -13.99343 -13.59105 -13.14520 -12.85841 -12.44087 -12.35686 -12.03444 -11.81282 -11.74632 -11.47220 -11.11752 -10.73117 -10.63937 -10.31132 -10.13014 -9.66180 -9.35636 -8.61298 -7.74180 -7.57799 -7.46344 -6.67130 -4.94572 1.04225 1.95634 2.38698 2.60702 2.72133 2.79684 2.87758 3.02340 3.14702 3.26260 3.38838 3.53675 3.74025 4.39148 4.50760 4.77417 5.59520 5.68278 6.14802 6.30062 6.39694 6.51115 6.72623 6.92775 7.03350 7.20087 7.40879 7.58793 7.68425 7.94372 7.99981 8.11641 9.36875 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.019942 B = 0.007790 C = 0.005633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.734674 B = 3593.638693 C = 4969.214451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C 0.266 3.734 3 C 0.046 3.954 4 C -0.161 4.161 5 C -0.051 4.051 6 C -0.133 4.133 7 S -0.164 6.164 8 C 0.059 3.941 9 C -0.355 4.355 10 C 0.060 3.940 11 C -0.362 4.362 12 H 0.108 0.892 13 C 0.052 3.948 14 N -0.759 5.759 15 Si 0.940 3.060 16 H -0.261 1.261 17 H -0.253 1.253 18 H -0.268 1.268 19 S 0.137 5.863 20 C -0.218 4.218 21 H 0.121 0.879 22 H 0.124 0.876 23 H 0.081 0.919 24 H 0.125 0.875 25 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.509 0.344 2.206 4.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.115 5.115 2 C -0.048 4.048 3 C 0.037 3.963 4 C -0.186 4.186 5 C -0.075 4.075 6 C -0.248 4.248 7 S -0.007 6.007 8 C 0.048 3.952 9 C -0.379 4.379 10 C -0.059 4.059 11 C -0.395 4.395 12 H 0.125 0.875 13 C -0.172 4.172 14 N -0.383 5.383 15 Si 0.762 3.238 16 H -0.185 1.185 17 H -0.176 1.176 18 H -0.193 1.193 19 S 0.398 5.602 20 C -0.337 4.337 21 H 0.139 0.861 22 H 0.142 0.858 23 H 0.046 0.954 24 H 0.143 0.857 25 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.067 0.376 1.404 1.803 hybrid contribution 0.992 0.915 0.265 1.375 sum 2.059 1.291 1.669 2.948 Atomic orbital electron populations 1.81108 1.12199 1.09555 1.08671 1.26019 0.93004 0.93052 0.92757 1.15454 0.82889 1.03027 0.94918 1.20383 0.93655 1.07180 0.97365 1.20800 0.93145 0.96981 0.96556 1.20973 0.92997 1.13025 0.97761 1.86463 1.04007 1.25319 1.84901 1.17945 0.90412 0.93697 0.93119 1.19711 0.99132 1.23279 0.95794 1.21547 0.93996 0.93969 0.96413 1.19502 0.96695 1.28291 0.95013 0.87452 1.26475 0.94188 0.94358 1.02218 1.68863 1.02704 1.30653 1.36099 0.85700 0.80617 0.79597 0.77858 1.18534 1.17594 1.19299 1.85051 1.07492 1.65542 1.02105 1.23622 0.97142 1.11140 1.01781 0.86147 0.85816 0.95423 0.85742 0.88113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -9.06 18.54 41.84 0.78 -8.28 15 2 C 0.27 5.30 15.03 -22.47 -0.34 4.97 15 3 C 0.05 0.92 5.77 -106.36 -0.61 0.30 15 4 C -0.16 -2.75 9.72 -39.20 -0.38 -3.13 15 5 C -0.05 -0.87 9.70 -39.66 -0.38 -1.26 15 6 C -0.13 -2.58 6.21 -37.76 -0.23 -2.82 15 7 S -0.16 -2.83 25.13 -107.50 -2.70 -5.53 15 8 C 0.06 1.30 5.84 -106.96 -0.62 0.67 15 9 C -0.36 -8.19 9.68 -39.53 -0.38 -8.57 15 10 C 0.06 1.43 6.07 -39.40 -0.24 1.20 15 11 C -0.36 -8.13 9.25 -38.28 -0.35 -8.49 15 12 H 0.11 2.25 7.86 -52.49 -0.41 1.83 15 13 C 0.05 1.08 5.47 -17.28 -0.09 0.98 15 14 N -0.76 -16.61 10.77 55.56 0.60 -16.01 15 15 Si 0.94 15.51 29.57 -169.99 -5.03 10.48 15 16 H -0.26 -4.28 7.11 56.52 0.40 -3.88 15 17 H -0.25 -4.09 7.11 56.52 0.40 -3.69 15 18 H -0.27 -4.35 7.11 56.52 0.40 -3.95 15 19 S 0.14 3.18 19.97 -107.50 -2.15 1.04 15 20 C -0.22 -4.82 6.34 -37.81 -0.24 -5.06 15 21 H 0.12 1.70 8.06 -52.49 -0.42 1.28 15 22 H 0.12 1.73 8.06 -52.49 -0.42 1.30 15 23 H 0.08 1.30 9.55 96.90 0.93 2.22 15 24 H 0.12 2.79 7.76 -52.49 -0.41 2.38 15 25 H 0.31 5.97 8.30 -40.82 -0.34 5.63 15 LS Contribution 263.98 15.07 3.98 3.98 Total: -1.00 -24.13 263.98 -8.28 -32.41 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: 0.13 Total: 3.12 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -3.89 Total: -21.21 kcal Atomic # 7 Polarization: -25.66 SS G_CDS: 1.37 Total: -24.29 kcal Atomic # 14 Polarization: 15.51 SS G_CDS: -5.03 Total: 10.48 kcal Atomic # 16 Polarization: 0.35 SS G_CDS: -4.85 Total: -4.50 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -24.13 -8.28 -32.41 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396208230.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.458 kcal (2) G-P(sol) polarization free energy of solvation -24.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds