Wall clock time and date at job start Mon Mar 30 2020 07:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39675 * 119.86481 * 293.77596 * 3 2 1 5 5 C 1.37825 * 120.19521 * 180.02562 * 4 3 2 6 6 C 1.38438 * 120.62405 * 359.97438 * 5 4 3 7 7 S 1.76197 * 119.75566 * 179.97438 * 6 5 4 8 8 C 1.42761 * 120.49260 * 359.96174 * 6 5 4 9 9 C 1.39543 * 128.43516 * 179.97438 * 8 6 5 10 10 C 1.37043 * 115.05505 * 180.02562 * 9 8 6 11 11 C 1.39873 * 124.86478 * 180.02562 * 10 9 8 12 12 H 1.07992 * 120.00439 * 351.70464 * 11 10 9 13 13 C 1.40078 * 119.99714 * 171.70564 * 11 10 9 14 14 N 1.30844 * 119.99594 * 351.82000 * 13 11 10 15 15 Si 1.86794 * 119.99890 * 171.82560 * 13 11 10 16 16 H 1.48500 * 109.46880 * 265.02241 * 15 13 11 17 17 H 1.48497 * 109.47272 * 25.02330 * 15 13 11 18 18 H 1.48497 * 109.47014 * 145.02551 * 15 13 11 19 19 S 1.75464 * 110.26485 * 0.26158 * 10 9 8 20 20 C 1.40124 * 118.60955 * 0.02562 * 8 6 5 21 21 H 1.08001 * 119.90583 * 0.02562 * 4 3 2 22 22 H 1.08000 * 119.68900 * 179.97438 * 5 4 3 23 23 H 1.41009 * 100.00049 * 269.98171 * 7 6 5 24 24 H 1.07995 * 122.47240 * 0.03751 * 9 8 6 25 25 H 0.97000 * 119.99259 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2638 -0.4874 1.1085 5 6 4.6420 -0.4895 1.1159 6 6 5.3538 -0.0105 0.0295 7 16 7.1154 -0.0233 0.0638 8 6 4.6713 0.4935 -1.1186 9 6 5.2165 1.0118 -2.2939 10 6 4.3005 1.4215 -3.2273 11 6 4.6198 1.9702 -4.4736 12 1 5.6439 2.2213 -4.7068 13 6 3.6110 2.1940 -5.4194 14 7 2.4008 1.7457 -5.2036 15 14 3.9935 3.1322 -6.9887 16 1 3.6495 4.5651 -6.8050 17 1 5.4399 3.0065 -7.3005 18 1 3.1951 2.5710 -8.1080 19 16 2.6700 1.1651 -2.6319 20 6 3.2700 0.4927 -1.1202 21 1 2.7202 -0.8642 1.9622 22 1 5.1717 -0.8684 1.9775 23 1 7.3586 1.2461 0.6274 24 1 6.2818 1.0846 -2.4560 25 1 1.7024 1.9004 -5.8587 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396208230.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:53 Heat of formation + Delta-G solvation = 36.607211 kcal Electronic energy + Delta-G solvation = -13879.036891 eV Core-core repulsion = 11459.694607 eV Total energy + Delta-G solvation = -2419.342283 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.10943 -37.74509 -36.72011 -34.99089 -32.04429 -31.01273 -27.40571 -24.99897 -23.99702 -21.49601 -20.17915 -18.99622 -18.62186 -17.31534 -16.77485 -16.22236 -15.70851 -15.46826 -15.17001 -14.67530 -14.39155 -14.00387 -13.94863 -13.56281 -13.31391 -13.23387 -13.01503 -12.64300 -12.19203 -12.01274 -11.85241 -11.63839 -11.22494 -11.02044 -10.18134 -9.36571 -9.10530 -8.87076 -8.37514 -6.62669 -0.48698 0.38566 0.96276 1.14855 1.25512 1.35122 1.54176 1.54984 1.58754 1.75328 1.85417 2.08900 2.17664 2.80960 2.94638 3.14795 4.21625 4.28069 4.62489 4.73106 4.82973 4.96994 5.25448 5.41078 5.45936 5.54671 5.83495 5.94052 6.04712 6.32807 6.38974 6.45730 7.85003 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.019942 B = 0.007790 C = 0.005633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.734674 B = 3593.638693 C = 4969.214451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C 0.276 3.724 3 C 0.034 3.966 4 C -0.131 4.131 5 C -0.043 4.043 6 C -0.137 4.137 7 S -0.154 6.154 8 C 0.037 3.963 9 C -0.376 4.376 10 C 0.037 3.963 11 C -0.394 4.394 12 H 0.113 0.887 13 C 0.019 3.981 14 N -0.791 5.791 15 Si 1.011 2.989 16 H -0.258 1.258 17 H -0.247 1.247 18 H -0.262 1.262 19 S 0.100 5.900 20 C -0.239 4.239 21 H 0.162 0.838 22 H 0.167 0.833 23 H 0.098 0.902 24 H 0.121 0.879 25 H 0.313 0.687 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.286 -0.089 3.693 5.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.131 5.131 2 C -0.039 4.039 3 C 0.025 3.975 4 C -0.155 4.155 5 C -0.066 4.066 6 C -0.252 4.252 7 S 0.002 5.998 8 C 0.027 3.973 9 C -0.400 4.400 10 C -0.082 4.082 11 C -0.427 4.427 12 H 0.131 0.869 13 C -0.202 4.202 14 N -0.416 5.416 15 Si 0.828 3.172 16 H -0.182 1.182 17 H -0.170 1.170 18 H -0.186 1.186 19 S 0.360 5.640 20 C -0.358 4.358 21 H 0.180 0.820 22 H 0.184 0.816 23 H 0.063 0.937 24 H 0.139 0.861 25 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.842 -0.070 2.911 3.446 hybrid contribution 0.812 0.947 0.073 1.250 sum 2.655 0.877 2.984 4.089 Atomic orbital electron populations 1.81113 1.12624 1.10194 1.09201 1.26042 0.92977 0.92551 0.92281 1.15670 0.82790 1.03774 0.95305 1.20939 0.93960 1.03665 0.96983 1.21310 0.93173 0.95284 0.96819 1.21374 0.94656 1.11785 0.97403 1.86412 1.02066 1.26076 1.85200 1.18143 0.90743 0.94527 0.93867 1.19779 0.98851 1.24666 0.96713 1.21806 0.94028 0.94989 0.97361 1.19797 0.97602 1.29780 0.95496 0.86931 1.27364 0.93528 0.94427 1.04845 1.68922 1.03653 1.31635 1.37353 0.84701 0.80577 0.78053 0.73835 1.18185 1.17036 1.18595 1.84906 1.08455 1.66658 1.03956 1.23650 0.97473 1.12706 1.01969 0.82031 0.81585 0.93743 0.86071 0.87384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -18.39 18.54 19.01 0.35 -18.04 15 2 C 0.28 10.69 15.03 88.33 1.33 12.01 15 3 C 0.03 1.28 5.77 -20.99 -0.12 1.16 15 4 C -0.13 -3.94 9.72 22.52 0.22 -3.72 15 5 C -0.04 -1.28 9.70 22.22 0.22 -1.06 15 6 C -0.14 -5.04 6.21 23.45 0.15 -4.89 15 7 S -0.15 -4.96 25.13 -56.49 -1.42 -6.38 15 8 C 0.04 1.65 5.84 -21.38 -0.12 1.53 15 9 C -0.38 -17.87 9.68 22.30 0.22 -17.66 15 10 C 0.04 1.86 6.07 22.38 0.14 1.99 15 11 C -0.39 -18.43 9.25 23.11 0.21 -18.22 15 12 H 0.11 4.91 7.86 -2.91 -0.02 4.89 15 13 C 0.02 0.81 5.47 85.29 0.47 1.27 15 14 N -0.79 -35.80 10.77 21.86 0.24 -35.57 15 15 Si 1.01 31.83 29.57 68.60 2.03 33.86 15 16 H -0.26 -7.91 7.11 99.48 0.71 -7.20 15 17 H -0.25 -7.48 7.11 99.48 0.71 -6.78 15 18 H -0.26 -7.88 7.11 99.48 0.71 -7.17 15 19 S 0.10 4.83 19.97 -56.49 -1.13 3.70 15 20 C -0.24 -10.63 6.34 23.42 0.15 -10.48 15 21 H 0.16 3.60 8.06 -2.91 -0.02 3.57 15 22 H 0.17 3.60 8.06 -2.91 -0.02 3.58 15 23 H 0.10 2.86 9.55 73.80 0.70 3.57 15 24 H 0.12 5.62 7.76 -2.91 -0.02 5.60 15 25 H 0.31 12.57 8.30 -92.71 -0.77 11.80 15 Total: -1.00 -53.52 263.98 4.87 -48.64 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: 1.96 Total: 11.85 kcal Atomic # 6 Polarization: -40.91 SS G_CDS: 2.84 Total: -38.07 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: 0.59 Total: -53.61 kcal Atomic # 14 Polarization: 31.83 SS G_CDS: 2.03 Total: 33.86 kcal Atomic # 16 Polarization: -0.13 SS G_CDS: -2.55 Total: -2.68 kcal Total: -53.52 4.87 -48.64 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396208230.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.252 kcal (2) G-P(sol) polarization free energy of solvation -53.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds