Wall clock time and date at job start Mon Mar 30 2020 07:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39148 * 119.57184 * 258.65534 * 3 2 1 5 5 C 1.40179 * 119.79177 * 180.02562 * 4 3 2 6 6 C 1.40833 * 120.18754 * 180.02562 * 5 4 3 7 7 H 1.07997 * 119.99848 * 154.47540 * 6 5 4 8 8 C 1.39697 * 119.99832 * 334.48061 * 6 5 4 9 9 N 1.31037 * 119.99948 * 342.51762 * 8 6 5 10 10 Si 1.86796 * 119.99960 * 162.51815 * 8 6 5 11 11 H 1.48499 * 109.47125 * 89.99966 * 10 8 6 12 12 H 1.48507 * 109.46890 * 209.99684 * 10 8 6 13 13 H 1.48494 * 109.47419 * 329.99599 * 10 8 6 14 14 C 1.46886 * 119.62585 * 359.97438 * 5 4 3 15 15 S 1.75890 * 130.55548 * 179.97438 * 14 5 4 16 16 C 1.75310 * 92.14694 * 179.85798 * 15 14 5 17 17 C 1.31967 * 111.24506 * 0.31106 * 16 15 14 18 18 C 1.39107 * 119.63269 * 0.02562 * 14 5 4 19 19 C 1.40226 * 119.57074 * 78.64981 * 3 2 1 20 20 S 1.76200 * 119.46912 * 0.02562 * 19 3 2 21 21 H 1.07996 * 120.10066 * 0.02562 * 4 3 2 22 22 H 0.96995 * 119.99770 * 180.02562 * 9 8 6 23 23 H 1.08001 * 124.37739 * 180.22562 * 16 15 14 24 24 H 1.08001 * 122.55399 * 179.90260 * 17 16 15 25 25 H 1.40998 * 99.99673 * 269.99665 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2546 0.2390 1.1866 5 6 4.6564 0.2412 1.1917 6 6 5.3598 0.4810 2.3881 7 1 6.3610 0.0957 2.5123 8 6 4.7623 1.2172 3.4140 9 7 3.7176 1.9663 3.1602 10 14 5.4526 1.1336 5.1477 11 1 6.4794 2.1919 5.3233 12 1 4.3561 1.3404 6.1276 13 1 6.0711 -0.1979 5.3707 14 6 5.3875 -0.0091 -0.0574 15 16 7.1158 -0.0714 -0.3781 16 6 6.8549 -0.4178 -2.0767 17 6 5.5675 -0.4712 -2.3617 18 6 4.6812 -0.2451 -1.2323 19 6 3.2601 -0.2391 -1.1958 20 16 2.3538 -0.5362 -2.6773 21 1 2.7092 0.4217 2.1006 22 1 3.3030 2.4777 3.8725 23 1 7.6457 -0.5667 -2.7972 24 1 5.2005 -0.6718 -3.3574 25 1 2.2281 -1.9389 -2.6102 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396208675.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:41 Heat of formation + Delta-G solvation = 61.723827 kcal Electronic energy + Delta-G solvation = -14083.890086 eV Core-core repulsion = 11665.636941 eV Total energy + Delta-G solvation = -2418.253145 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.24016 -35.91557 -35.11182 -33.27973 -30.40616 -28.52444 -26.00764 -23.25964 -22.06836 -20.57039 -17.95401 -17.36968 -16.73455 -16.01759 -15.19837 -15.05842 -14.23527 -13.48471 -13.39000 -13.15790 -12.84864 -12.42099 -12.07328 -11.98934 -11.77530 -11.52625 -11.32110 -11.09460 -10.84745 -10.61733 -10.30162 -10.05341 -9.78950 -9.47032 -8.44877 -7.70871 -7.44433 -7.38430 -7.05950 -4.89716 1.46350 1.75304 2.42044 2.55926 2.68221 2.80918 2.86251 2.93709 3.16793 3.41047 3.50064 3.54493 3.74833 4.29727 4.82544 5.03800 5.39842 5.91602 6.16105 6.26493 6.51445 6.56322 6.64280 6.87107 6.99930 7.19570 7.32409 7.51871 7.88629 8.13096 8.18312 8.30197 9.53125 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.017314 B = 0.009316 C = 0.006173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.817927 B = 3004.944922 C = 4534.545480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C 0.282 3.718 3 C 0.055 3.945 4 C -0.145 4.145 5 C 0.161 3.839 6 C -0.410 4.410 7 H 0.095 0.905 8 C 0.069 3.931 9 N -0.752 5.752 10 Si 0.921 3.079 11 H -0.262 1.262 12 H -0.269 1.269 13 H -0.253 1.253 14 C -0.208 4.208 15 S 0.062 5.938 16 C -0.210 4.210 17 C -0.120 4.120 18 C 0.005 3.995 19 C -0.189 4.189 20 S -0.169 6.169 21 H 0.137 0.863 22 H 0.296 0.704 23 H 0.155 0.845 24 H 0.138 0.862 25 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.813 -2.191 -1.482 6.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.129 5.129 2 C -0.033 4.033 3 C 0.047 3.953 4 C -0.172 4.172 5 C 0.155 3.845 6 C -0.436 4.436 7 H 0.113 0.887 8 C -0.155 4.155 9 N -0.373 5.373 10 Si 0.743 3.257 11 H -0.186 1.186 12 H -0.194 1.194 13 H -0.177 1.177 14 C -0.326 4.326 15 S 0.325 5.675 16 C -0.344 4.344 17 C -0.152 4.152 18 C -0.006 4.006 19 C -0.308 4.308 20 S -0.012 6.012 21 H 0.155 0.845 22 H 0.107 0.893 23 H 0.172 0.828 24 H 0.156 0.844 25 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges 4.744 -1.762 -1.383 5.246 hybrid contribution -0.088 -0.808 0.703 1.075 sum 4.655 -2.570 -0.680 5.361 Atomic orbital electron populations 1.81024 1.12342 1.09763 1.09741 1.25892 0.92971 0.92851 0.91608 1.15956 0.83044 1.01973 0.94316 1.21084 0.93233 1.07311 0.95584 1.17878 0.90729 0.87054 0.88866 1.19772 1.01815 1.25043 0.96953 0.88725 1.26156 0.94201 0.92815 1.02323 1.69867 1.15990 1.15442 1.36010 0.86053 0.79824 0.80705 0.79122 1.18649 1.19363 1.17685 1.23680 0.94394 1.17693 0.96800 1.83571 1.05344 1.76119 1.02434 1.24967 0.99784 1.09607 1.00009 1.20971 0.91867 1.03337 0.99019 1.18719 0.91795 0.98736 0.91355 1.19765 0.91756 1.26253 0.93036 1.86415 1.73190 1.10337 1.31217 0.84532 0.89298 0.82784 0.84404 0.97081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -10.06 18.54 41.84 0.78 -9.28 15 2 C 0.28 6.19 14.10 -22.47 -0.32 5.87 15 3 C 0.05 1.21 5.73 -106.89 -0.61 0.60 15 4 C -0.14 -3.31 8.34 -38.52 -0.32 -3.64 15 5 C 0.16 3.70 5.72 -104.69 -0.60 3.10 15 6 C -0.41 -9.02 8.90 -38.06 -0.34 -9.36 15 7 H 0.09 1.98 7.87 -52.49 -0.41 1.57 15 8 C 0.07 1.44 5.13 -17.35 -0.09 1.35 15 9 N -0.75 -16.42 10.99 55.54 0.61 -15.80 15 10 Si 0.92 15.57 29.59 -169.99 -5.03 10.54 15 11 H -0.26 -4.40 7.11 56.52 0.40 -4.00 15 12 H -0.27 -4.49 7.11 56.52 0.40 -4.09 15 13 H -0.25 -4.26 7.11 56.52 0.40 -3.86 15 14 C -0.21 -4.51 6.54 -35.76 -0.23 -4.74 15 15 S 0.06 1.13 23.03 -107.50 -2.48 -1.35 15 16 C -0.21 -3.39 11.04 28.82 0.32 -3.08 15 17 C -0.12 -2.14 9.93 -38.68 -0.38 -2.52 15 18 C 0.00 0.10 5.99 -105.25 -0.63 -0.53 15 19 C -0.19 -4.07 6.24 -37.33 -0.23 -4.30 15 20 S -0.17 -3.26 24.13 -107.50 -2.59 -5.85 15 21 H 0.14 3.17 6.19 -52.49 -0.33 2.85 15 22 H 0.30 5.80 8.30 -40.82 -0.34 5.46 15 23 H 0.15 1.95 8.06 -52.49 -0.42 1.53 15 24 H 0.14 2.20 7.90 -52.49 -0.41 1.79 15 25 H 0.06 1.17 9.55 96.90 0.93 2.09 15 LS Contribution 263.14 15.07 3.97 3.97 Total: -1.00 -23.72 263.14 -7.97 -31.69 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: 0.22 Total: 3.33 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: -3.44 Total: -17.25 kcal Atomic # 7 Polarization: -26.47 SS G_CDS: 1.39 Total: -25.09 kcal Atomic # 14 Polarization: 15.57 SS G_CDS: -5.03 Total: 10.54 kcal Atomic # 16 Polarization: -2.13 SS G_CDS: -5.07 Total: -7.20 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -23.72 -7.97 -31.69 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396208675.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.418 kcal (2) G-P(sol) polarization free energy of solvation -23.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds