Wall clock time and date at job start Mon Mar 30 2020 07:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39148 * 119.57184 * 258.65534 * 3 2 1 5 5 C 1.40179 * 119.79177 * 180.02562 * 4 3 2 6 6 C 1.40833 * 120.18754 * 180.02562 * 5 4 3 7 7 H 1.07997 * 119.99848 * 154.47540 * 6 5 4 8 8 C 1.39697 * 119.99832 * 334.48061 * 6 5 4 9 9 N 1.31037 * 119.99948 * 342.51762 * 8 6 5 10 10 Si 1.86796 * 119.99960 * 162.51815 * 8 6 5 11 11 H 1.48499 * 109.47125 * 89.99966 * 10 8 6 12 12 H 1.48507 * 109.46890 * 209.99684 * 10 8 6 13 13 H 1.48494 * 109.47419 * 329.99599 * 10 8 6 14 14 C 1.46886 * 119.62585 * 359.97438 * 5 4 3 15 15 S 1.75890 * 130.55548 * 179.97438 * 14 5 4 16 16 C 1.75310 * 92.14694 * 179.85798 * 15 14 5 17 17 C 1.31967 * 111.24506 * 0.31106 * 16 15 14 18 18 C 1.39107 * 119.63269 * 0.02562 * 14 5 4 19 19 C 1.40226 * 119.57074 * 78.64981 * 3 2 1 20 20 S 1.76200 * 119.46912 * 0.02562 * 19 3 2 21 21 H 1.07996 * 120.10066 * 0.02562 * 4 3 2 22 22 H 0.96995 * 119.99770 * 180.02562 * 9 8 6 23 23 H 1.08001 * 124.37739 * 180.22562 * 16 15 14 24 24 H 1.08001 * 122.55399 * 179.90260 * 17 16 15 25 25 H 1.40998 * 99.99673 * 269.99665 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2546 0.2390 1.1866 5 6 4.6564 0.2412 1.1917 6 6 5.3598 0.4810 2.3881 7 1 6.3610 0.0957 2.5123 8 6 4.7623 1.2172 3.4140 9 7 3.7176 1.9663 3.1602 10 14 5.4526 1.1336 5.1477 11 1 6.4794 2.1919 5.3233 12 1 4.3561 1.3404 6.1276 13 1 6.0711 -0.1979 5.3707 14 6 5.3875 -0.0091 -0.0574 15 16 7.1158 -0.0714 -0.3781 16 6 6.8549 -0.4178 -2.0767 17 6 5.5675 -0.4712 -2.3617 18 6 4.6812 -0.2451 -1.2323 19 6 3.2601 -0.2391 -1.1958 20 16 2.3538 -0.5362 -2.6773 21 1 2.7092 0.4217 2.1006 22 1 3.3030 2.4777 3.8725 23 1 7.6457 -0.5667 -2.7972 24 1 5.2005 -0.6718 -3.3574 25 1 2.2281 -1.9389 -2.6102 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396208675.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:41 Heat of formation + Delta-G solvation = 51.750282 kcal Electronic energy + Delta-G solvation = -14084.322572 eV Core-core repulsion = 11665.636941 eV Total energy + Delta-G solvation = -2418.685631 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.84116 -37.61462 -36.68109 -34.86955 -32.06043 -30.06145 -27.64713 -24.88404 -23.62097 -22.10306 -19.51221 -18.93059 -18.37452 -17.55670 -16.70407 -16.56385 -15.81838 -15.06867 -14.98900 -14.64941 -14.43204 -14.04163 -13.76319 -13.51570 -13.34960 -12.96803 -12.83713 -12.61666 -12.37217 -12.06763 -11.84265 -11.55838 -11.31925 -11.04533 -10.02576 -9.28954 -8.99037 -8.93942 -8.58300 -6.55997 -0.14131 0.17198 0.98332 1.01999 1.26999 1.40996 1.45724 1.55789 1.67866 1.73649 1.87515 2.10526 2.12788 2.65647 3.11094 3.36079 4.04043 4.47364 4.61609 4.81033 4.92595 4.95402 5.18849 5.29208 5.44119 5.56530 5.72500 5.88053 6.21388 6.48233 6.52265 6.56368 7.99116 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.017314 B = 0.009316 C = 0.006173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.817927 B = 3004.944922 C = 4534.545480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.287 3.713 3 C 0.044 3.956 4 C -0.164 4.164 5 C 0.140 3.860 6 C -0.430 4.430 7 H 0.100 0.900 8 C 0.037 3.963 9 N -0.784 5.784 10 Si 0.988 3.012 11 H -0.256 1.256 12 H -0.265 1.265 13 H -0.251 1.251 14 C -0.238 4.238 15 S 0.077 5.923 16 C -0.184 4.184 17 C -0.137 4.137 18 C -0.006 4.006 19 C -0.203 4.203 20 S -0.156 6.156 21 H 0.124 0.876 22 H 0.303 0.697 23 H 0.199 0.801 24 H 0.159 0.841 25 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.394 -2.595 -2.113 8.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.027 4.027 3 C 0.037 3.963 4 C -0.192 4.192 5 C 0.133 3.867 6 C -0.456 4.456 7 H 0.118 0.882 8 C -0.184 4.184 9 N -0.406 5.406 10 Si 0.807 3.193 11 H -0.180 1.180 12 H -0.190 1.190 13 H -0.174 1.174 14 C -0.356 4.356 15 S 0.340 5.660 16 C -0.318 4.318 17 C -0.168 4.168 18 C -0.018 4.018 19 C -0.322 4.322 20 S 0.002 5.998 21 H 0.142 0.858 22 H 0.114 0.886 23 H 0.216 0.784 24 H 0.176 0.824 25 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 6.321 -2.166 -2.030 6.983 hybrid contribution -0.535 -0.701 0.794 1.187 sum 5.786 -2.867 -1.236 6.574 Atomic orbital electron populations 1.81007 1.12419 1.10202 1.10110 1.25923 0.92952 0.92555 0.91298 1.16063 0.83017 1.02500 0.94744 1.20988 0.93648 1.09077 0.95447 1.18164 0.91003 0.87485 0.90001 1.20017 1.02266 1.25736 0.97536 0.88236 1.26962 0.94125 0.91813 1.05544 1.69906 1.17090 1.16119 1.37447 0.85073 0.79173 0.80727 0.74373 1.18017 1.18960 1.17396 1.24000 0.96772 1.18108 0.96700 1.83462 1.02640 1.75773 1.04085 1.25453 1.00325 1.06606 0.99368 1.21098 0.91963 1.04736 0.99005 1.19142 0.91960 0.98233 0.92468 1.20019 0.92620 1.25945 0.93591 1.86250 1.72835 1.11174 1.29569 0.85837 0.88579 0.78391 0.82368 0.95801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -20.60 18.54 19.00 0.35 -20.25 15 2 C 0.29 12.80 14.10 88.33 1.25 14.05 15 3 C 0.04 2.01 5.73 -21.33 -0.12 1.89 15 4 C -0.16 -7.81 8.34 22.96 0.19 -7.61 15 5 C 0.14 6.56 5.72 -19.91 -0.11 6.45 15 6 C -0.43 -19.21 8.90 23.26 0.21 -19.00 15 7 H 0.10 4.19 7.87 -2.91 -0.02 4.17 15 8 C 0.04 1.55 5.13 85.16 0.44 1.99 15 9 N -0.78 -35.02 10.99 21.79 0.24 -34.78 15 10 Si 0.99 31.53 29.59 68.60 2.03 33.56 15 11 H -0.26 -7.89 7.11 99.48 0.71 -7.18 15 12 H -0.27 -8.23 7.11 99.48 0.71 -7.52 15 13 H -0.25 -7.82 7.11 99.48 0.71 -7.11 15 14 C -0.24 -10.29 6.54 24.74 0.16 -10.13 15 15 S 0.08 2.67 23.03 -56.49 -1.30 1.37 15 16 C -0.18 -5.30 11.04 66.93 0.74 -4.56 15 17 C -0.14 -4.54 9.93 23.21 0.23 -4.31 15 18 C -0.01 -0.26 5.99 -20.27 -0.12 -0.38 15 19 C -0.20 -8.71 6.24 23.73 0.15 -8.56 15 20 S -0.16 -5.80 24.13 -56.49 -1.36 -7.16 15 21 H 0.12 6.04 6.19 -2.91 -0.02 6.02 15 22 H 0.30 12.11 8.30 -92.71 -0.77 11.34 15 23 H 0.20 3.93 8.06 -2.91 -0.02 3.90 15 24 H 0.16 4.55 7.90 -2.91 -0.02 4.53 15 25 H 0.08 2.67 9.55 73.80 0.70 3.38 15 Total: -1.00 -50.85 263.14 4.93 -45.92 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: 1.97 Total: 11.53 kcal Atomic # 6 Polarization: -33.19 SS G_CDS: 3.00 Total: -30.18 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: 0.59 Total: -55.03 kcal Atomic # 14 Polarization: 31.53 SS G_CDS: 2.03 Total: 33.56 kcal Atomic # 16 Polarization: -3.13 SS G_CDS: -2.66 Total: -5.79 kcal Total: -50.85 4.93 -45.92 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396208675.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.670 kcal (2) G-P(sol) polarization free energy of solvation -50.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds