Wall clock time and date at job start Mon Mar 30 2020 07:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39243 * 119.71016 * 225.53000 * 3 2 1 5 5 C 1.39452 * 121.53575 * 179.97438 * 4 3 2 6 6 S 1.76145 * 130.28612 * 180.02562 * 5 4 3 7 7 C 1.75496 * 91.51913 * 179.97438 * 6 5 4 8 8 C 1.32685 * 110.67639 * 359.97438 * 7 6 5 9 9 C 1.39796 * 120.41861 * 359.97438 * 5 4 3 10 10 C 1.47862 * 118.45301 * 359.76433 * 9 5 4 11 11 C 1.40297 * 120.33795 * 180.24671 * 10 9 5 12 12 H 1.07997 * 119.99896 * 220.11801 * 11 10 9 13 13 C 1.39944 * 119.99945 * 40.11541 * 11 10 9 14 14 N 1.30921 * 120.00016 * 19.71045 * 13 11 10 15 15 Si 1.86804 * 119.99878 * 199.71098 * 13 11 10 16 16 H 1.48502 * 109.47071 * 60.00242 * 15 13 11 17 17 H 1.48498 * 109.46933 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47116 * 299.99863 * 15 13 11 19 19 C 1.40314 * 119.71903 * 45.50801 * 3 2 1 20 20 S 1.76200 * 120.15288 * 359.97438 * 19 3 2 21 21 H 1.07998 * 119.23674 * 359.97438 * 4 3 2 22 22 H 1.07995 * 124.66155 * 179.97438 * 7 6 5 23 23 H 1.08006 * 122.07754 * 180.02562 * 8 7 6 24 24 H 0.97001 * 119.99834 * 183.37432 * 14 13 11 25 25 H 1.41000 * 99.99669 * 89.99899 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2577 0.8482 0.8630 5 6 4.6515 0.8795 0.8951 6 16 5.7467 1.8457 1.8799 7 6 7.1496 1.1067 1.1280 8 6 6.7784 0.2140 0.2193 9 6 5.3977 0.0508 0.0521 10 6 4.6745 -0.8570 -0.8639 11 6 5.3840 -1.7094 -1.7232 12 1 5.0402 -1.8640 -2.7353 13 6 6.5371 -2.3592 -1.2689 14 7 6.7484 -2.4959 0.0159 15 14 7.7750 -3.0316 -2.4958 16 1 8.2953 -1.9211 -3.3331 17 1 8.8992 -3.6701 -1.7652 18 1 7.1141 -4.0388 -3.3642 19 6 3.2640 -0.8530 -0.8693 20 16 2.3801 -1.9219 -1.9559 21 1 2.7003 1.4964 1.5230 22 1 8.1743 1.3457 1.3714 23 1 7.4966 -0.3517 -0.3559 24 1 7.5705 -2.9025 0.3316 25 1 2.2563 -1.0801 -3.0802 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396208698.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:25 Heat of formation + Delta-G solvation = 59.371955 kcal Electronic energy + Delta-G solvation = -14305.137606 eV Core-core repulsion = 11886.782476 eV Total energy + Delta-G solvation = -2418.355130 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.04930 -37.78782 -35.71756 -35.57216 -32.07261 -30.39723 -27.28366 -25.02908 -23.51021 -21.58374 -20.67432 -18.18556 -18.06810 -17.63961 -17.00285 -16.41301 -15.96702 -15.01490 -14.86540 -14.65617 -14.38327 -14.07920 -13.67727 -13.62016 -13.31188 -13.15405 -12.92947 -12.60272 -12.24429 -12.11055 -11.85372 -11.51687 -11.17073 -10.88957 -10.06115 -9.13542 -8.93119 -8.74905 -8.36168 -6.51312 -0.37229 0.50534 0.83041 1.10298 1.27524 1.30689 1.45829 1.53316 1.56731 1.74226 1.99739 2.20827 2.31338 2.68755 3.07369 3.37914 4.21671 4.32992 4.68919 4.77157 4.97171 5.09769 5.21652 5.25164 5.50357 5.61838 5.75920 5.91320 6.28510 6.50496 6.60681 6.69078 8.15689 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.015290 B = 0.011384 C = 0.006760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.802853 B = 2458.919472 C = 4141.275684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C 0.288 3.712 3 C 0.057 3.943 4 C -0.159 4.159 5 C -0.114 4.114 6 S 0.088 5.912 7 C -0.237 4.237 8 C -0.071 4.071 9 C -0.114 4.114 10 C 0.170 3.830 11 C -0.445 4.445 12 H 0.096 0.904 13 C 0.054 3.946 14 N -0.781 5.781 15 Si 0.968 3.032 16 H -0.255 1.255 17 H -0.264 1.264 18 H -0.261 1.261 19 C -0.229 4.229 20 S -0.151 6.151 21 H 0.132 0.868 22 H 0.185 0.815 23 H 0.128 0.872 24 H 0.300 0.700 25 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.798 3.750 0.417 6.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.132 5.132 2 C -0.027 4.027 3 C 0.048 3.952 4 C -0.187 4.187 5 C -0.230 4.230 6 S 0.351 5.649 7 C -0.371 4.371 8 C -0.101 4.101 9 C -0.126 4.126 10 C 0.163 3.837 11 C -0.472 4.472 12 H 0.114 0.886 13 C -0.168 4.168 14 N -0.403 5.403 15 Si 0.788 3.212 16 H -0.179 1.179 17 H -0.188 1.188 18 H -0.186 1.186 19 C -0.348 4.348 20 S 0.007 5.993 21 H 0.150 0.850 22 H 0.202 0.798 23 H 0.146 0.854 24 H 0.111 0.889 25 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 3.611 3.963 1.330 5.524 hybrid contribution 1.474 -0.375 -1.541 2.165 sum 5.085 3.588 -0.210 6.227 Atomic orbital electron populations 1.81052 1.12323 1.10057 1.09774 1.25752 0.92681 0.92001 0.92233 1.15858 0.82964 0.97896 0.98474 1.19680 0.90938 1.04186 1.03882 1.22562 0.97348 1.01797 1.01296 1.83356 0.95723 1.43280 1.42553 1.25307 1.02550 1.04993 1.04215 1.19840 0.94734 0.96930 0.98547 1.19557 0.92989 0.98448 1.01591 1.18653 0.89128 0.88257 0.87711 1.19679 1.07182 1.20572 0.99718 0.88631 1.26589 0.98684 0.94392 0.97118 1.69896 1.25053 1.29070 1.16249 0.85429 0.77300 0.79504 0.78952 1.17876 1.18845 1.18550 1.20829 0.94592 1.10126 1.09231 1.86213 1.72160 1.24837 1.16136 0.84977 0.79812 0.85398 0.88859 0.96426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -18.78 18.54 19.00 0.35 -18.43 15 2 C 0.29 11.73 14.19 88.33 1.25 12.98 15 3 C 0.06 2.41 5.74 -21.29 -0.12 2.29 15 4 C -0.16 -6.23 9.68 22.80 0.22 -6.01 15 5 C -0.11 -4.58 6.47 22.94 0.15 -4.43 15 6 S 0.09 2.84 23.30 -56.49 -1.32 1.53 15 7 C -0.24 -7.76 11.11 66.65 0.74 -7.02 15 8 C -0.07 -2.80 8.24 21.53 0.18 -2.62 15 9 C -0.11 -5.02 5.51 -19.92 -0.11 -5.13 15 10 C 0.17 7.96 5.50 -19.54 -0.11 7.85 15 11 C -0.44 -20.24 8.02 23.18 0.19 -20.06 15 12 H 0.10 4.28 7.49 -2.91 -0.02 4.26 15 13 C 0.05 2.25 3.83 85.24 0.33 2.58 15 14 N -0.78 -34.06 10.84 21.83 0.24 -33.82 15 15 Si 0.97 32.02 29.61 68.60 2.03 34.05 15 16 H -0.25 -8.20 7.11 99.48 0.71 -7.50 15 17 H -0.26 -8.27 7.11 99.48 0.71 -7.56 15 18 H -0.26 -8.76 7.11 99.48 0.71 -8.05 15 19 C -0.23 -10.37 6.21 23.47 0.15 -10.23 15 20 S -0.15 -6.38 23.48 -56.49 -1.33 -7.71 15 21 H 0.13 4.47 8.06 -2.91 -0.02 4.44 15 22 H 0.18 4.66 8.06 -2.91 -0.02 4.64 15 23 H 0.13 5.05 6.08 -2.91 -0.02 5.03 15 24 H 0.30 11.76 8.30 -92.71 -0.77 10.99 15 25 H 0.07 2.77 9.55 73.80 0.70 3.47 15 Total: -1.00 -49.24 259.13 4.81 -44.44 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: 1.97 Total: 9.73 kcal Atomic # 6 Polarization: -32.65 SS G_CDS: 2.86 Total: -29.79 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: 0.59 Total: -52.25 kcal Atomic # 14 Polarization: 32.02 SS G_CDS: 2.03 Total: 34.05 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -2.64 Total: -6.18 kcal Total: -49.24 4.81 -44.44 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396208698.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.809 kcal (2) G-P(sol) polarization free energy of solvation -49.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds