Wall clock time and date at job start Mon Mar 30 2020 07:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39134 * 120.43220 * 211.13392 * 3 2 1 5 5 S 1.76201 * 119.74197 * 0.02562 * 4 3 2 6 6 C 1.42440 * 120.51508 * 179.79480 * 4 3 2 7 7 C 1.40470 * 127.91518 * 180.19317 * 6 4 3 8 8 C 1.32561 * 115.90294 * 180.27457 * 7 6 4 9 9 S 1.75435 * 110.81825 * 359.97438 * 8 7 6 10 10 C 1.40264 * 119.67532 * 0.48170 * 6 4 3 11 11 C 1.39141 * 121.01912 * 359.75643 * 10 6 4 12 12 C 1.40266 * 120.69911 * 0.02562 * 11 10 6 13 13 C 1.40432 * 120.52147 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99770 * 204.99964 * 13 12 11 15 15 C 1.40044 * 119.99889 * 25.00218 * 13 12 11 16 16 N 1.30799 * 120.00051 * 17.63143 * 15 13 12 17 17 Si 1.86803 * 119.99803 * 197.62721 * 15 13 12 18 18 H 1.48500 * 109.46941 * 90.00448 * 17 15 13 19 19 H 1.48497 * 109.47036 * 209.99845 * 17 15 13 20 20 H 1.48492 * 109.47047 * 330.00009 * 17 15 13 21 21 H 1.41001 * 99.99762 * 89.99799 * 5 4 3 22 22 H 1.08002 * 122.04670 * 0.25002 * 7 6 4 23 23 H 1.08001 * 124.58948 * 180.02562 * 8 7 6 24 24 H 1.07995 * 119.64718 * 180.02562 * 11 10 6 25 25 H 0.97001 * 119.99862 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2723 1.0278 0.6203 5 16 2.3953 2.3355 1.4112 6 6 4.6967 1.0279 0.6251 7 6 5.5578 1.9757 1.2025 8 6 6.8549 1.7429 1.0590 9 16 7.1267 0.2631 0.1566 10 6 5.3934 -0.0110 -0.0095 11 6 4.7146 -1.0481 -0.6417 12 6 3.3124 -1.0798 -0.6602 13 6 2.6311 -2.1280 -1.2998 14 1 1.6277 -1.9743 -1.6685 15 6 3.2528 -3.3727 -1.4595 16 7 4.2979 -3.6794 -0.7352 17 14 2.5894 -4.5949 -2.7067 18 1 3.2524 -4.3742 -4.0170 19 1 2.8643 -5.9774 -2.2395 20 1 1.1241 -4.4048 -2.8550 21 1 2.2743 1.7989 2.7095 22 1 5.1859 2.8413 1.7306 23 1 7.6383 2.3777 1.4460 24 1 5.2732 -1.8370 -1.1231 25 1 4.7287 -4.5414 -0.8461 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396208815.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:44 Heat of formation + Delta-G solvation = 61.690177 kcal Electronic energy + Delta-G solvation = -14116.977823 eV Core-core repulsion = 11698.723218 eV Total energy + Delta-G solvation = -2418.254604 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -38.43636 -35.89973 -35.01515 -33.10257 -30.16112 -29.31316 -25.89701 -23.17329 -22.14506 -20.45441 -18.55653 -17.02598 -16.79385 -16.19423 -15.42569 -15.09615 -14.12852 -13.51970 -13.28820 -13.04860 -12.77956 -12.34595 -12.29995 -11.98287 -11.67152 -11.57933 -11.43470 -11.10094 -10.96697 -10.49255 -10.24523 -10.11007 -9.81423 -9.41266 -8.73362 -7.70624 -7.70170 -7.35385 -7.04234 -4.87486 1.30987 1.72484 2.19127 2.43699 2.72426 2.82449 2.83456 2.87364 3.03026 3.28944 3.55793 3.67952 3.89528 4.23539 4.96434 5.05149 5.62831 5.94586 6.14644 6.29237 6.48407 6.50648 6.63940 6.78246 7.11787 7.22216 7.29735 7.45528 7.88920 8.13583 8.19874 8.51660 9.53461 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.017647 B = 0.009149 C = 0.006141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.255901 B = 3059.600281 C = 4558.212760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C 0.296 3.704 3 C -0.097 4.097 4 C 0.023 3.977 5 S -0.175 6.175 6 C -0.173 4.173 7 C -0.075 4.075 8 C -0.248 4.248 9 S 0.012 5.988 10 C -0.062 4.062 11 C -0.133 4.133 12 C 0.149 3.851 13 C -0.410 4.410 14 H 0.094 0.906 15 C 0.072 3.928 16 N -0.753 5.753 17 Si 0.921 3.079 18 H -0.259 1.259 19 H -0.271 1.271 20 H -0.255 1.255 21 H 0.099 0.901 22 H 0.133 0.867 23 H 0.150 0.850 24 H 0.135 0.865 25 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.585 2.394 0.605 5.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.146 5.146 2 C -0.017 4.017 3 C -0.105 4.105 4 C -0.094 4.094 5 S -0.017 6.017 6 C -0.182 4.182 7 C -0.104 4.104 8 C -0.381 4.381 9 S 0.272 5.728 10 C -0.179 4.179 11 C -0.160 4.160 12 C 0.139 3.861 13 C -0.438 4.438 14 H 0.112 0.888 15 C -0.153 4.153 16 N -0.374 5.374 17 Si 0.743 3.257 18 H -0.183 1.183 19 H -0.195 1.195 20 H -0.179 1.179 21 H 0.064 0.936 22 H 0.150 0.850 23 H 0.168 0.832 24 H 0.153 0.847 25 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.862 2.373 0.505 4.561 hybrid contribution -0.400 -0.958 0.488 1.147 sum 3.462 1.415 0.993 3.870 Atomic orbital electron populations 1.81017 1.12180 1.10475 1.10942 1.25264 0.92294 0.91613 0.92490 1.17247 0.83869 1.00300 1.09056 1.20715 0.92858 0.94872 1.00977 1.86673 1.74455 1.27183 1.13433 1.17577 0.91319 0.98576 1.10686 1.19868 0.92015 0.98995 0.99568 1.24643 0.99301 1.02897 1.11287 1.83858 1.04964 1.23455 1.60558 1.22412 0.94659 0.98603 1.02211 1.20669 0.93109 0.97878 1.04334 1.18126 0.90713 0.89151 0.88150 1.19735 1.01816 0.94181 1.28018 0.88812 1.26159 0.94086 0.99704 0.95339 1.69759 1.15556 1.22780 1.29294 0.86046 0.81014 0.78295 0.80321 1.18325 1.19530 1.17886 0.93621 0.84970 0.83230 0.84718 0.89308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.70 18.54 41.84 0.78 -9.93 15 2 C 0.30 6.65 13.16 -22.47 -0.30 6.35 15 3 C -0.10 -2.16 5.94 -104.14 -0.62 -2.78 15 4 C 0.02 0.48 6.22 -37.63 -0.23 0.25 15 5 S -0.18 -3.18 24.00 -107.50 -2.58 -5.76 15 6 C -0.17 -3.57 5.86 -106.68 -0.63 -4.20 15 7 C -0.07 -1.34 9.66 -40.65 -0.39 -1.73 15 8 C -0.25 -4.14 11.09 28.82 0.32 -3.82 15 9 S 0.01 0.22 23.30 -107.50 -2.50 -2.29 15 10 C -0.06 -1.32 6.44 -38.49 -0.25 -1.56 15 11 C -0.13 -3.01 8.71 -38.48 -0.34 -3.35 15 12 C 0.15 3.46 5.72 -104.81 -0.60 2.86 15 13 C -0.41 -9.36 8.54 -38.08 -0.33 -9.69 15 14 H 0.09 2.13 7.38 -52.49 -0.39 1.75 15 15 C 0.07 1.52 5.13 -17.31 -0.09 1.43 15 16 N -0.75 -16.34 10.98 55.55 0.61 -15.73 15 17 Si 0.92 16.09 29.60 -169.99 -5.03 11.06 15 18 H -0.26 -4.44 7.11 56.52 0.40 -4.04 15 19 H -0.27 -4.61 7.11 56.52 0.40 -4.21 15 20 H -0.26 -4.56 7.11 56.52 0.40 -4.16 15 21 H 0.10 1.66 9.55 96.90 0.93 2.58 15 22 H 0.13 2.11 7.69 -52.49 -0.40 1.70 15 23 H 0.15 2.03 8.06 -52.49 -0.42 1.60 15 24 H 0.14 3.08 6.15 -52.49 -0.32 2.76 15 25 H 0.30 5.72 8.30 -40.82 -0.34 5.38 15 LS Contribution 261.33 15.07 3.94 3.94 Total: -1.00 -23.60 261.33 -7.98 -31.58 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: 0.25 Total: 3.37 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -3.44 Total: -16.24 kcal Atomic # 7 Polarization: -27.04 SS G_CDS: 1.39 Total: -25.66 kcal Atomic # 14 Polarization: 16.09 SS G_CDS: -5.03 Total: 11.06 kcal Atomic # 16 Polarization: -2.96 SS G_CDS: -5.08 Total: -8.04 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -23.60 -7.98 -31.58 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396208815.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.266 kcal (2) G-P(sol) polarization free energy of solvation -23.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds