Wall clock time and date at job start Mon Mar 30 2020 07:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39134 * 120.43220 * 211.13392 * 3 2 1 5 5 S 1.76201 * 119.74197 * 0.02562 * 4 3 2 6 6 C 1.42440 * 120.51508 * 179.79480 * 4 3 2 7 7 C 1.40470 * 127.91518 * 180.19317 * 6 4 3 8 8 C 1.32561 * 115.90294 * 180.27457 * 7 6 4 9 9 S 1.75435 * 110.81825 * 359.97438 * 8 7 6 10 10 C 1.40264 * 119.67532 * 0.48170 * 6 4 3 11 11 C 1.39141 * 121.01912 * 359.75643 * 10 6 4 12 12 C 1.40266 * 120.69911 * 0.02562 * 11 10 6 13 13 C 1.40432 * 120.52147 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99770 * 204.99964 * 13 12 11 15 15 C 1.40044 * 119.99889 * 25.00218 * 13 12 11 16 16 N 1.30799 * 120.00051 * 17.63143 * 15 13 12 17 17 Si 1.86803 * 119.99803 * 197.62721 * 15 13 12 18 18 H 1.48500 * 109.46941 * 90.00448 * 17 15 13 19 19 H 1.48497 * 109.47036 * 209.99845 * 17 15 13 20 20 H 1.48492 * 109.47047 * 330.00009 * 17 15 13 21 21 H 1.41001 * 99.99762 * 89.99799 * 5 4 3 22 22 H 1.08002 * 122.04670 * 0.25002 * 7 6 4 23 23 H 1.08001 * 124.58948 * 180.02562 * 8 7 6 24 24 H 1.07995 * 119.64718 * 180.02562 * 11 10 6 25 25 H 0.97001 * 119.99862 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2723 1.0278 0.6203 5 16 2.3953 2.3355 1.4112 6 6 4.6967 1.0279 0.6251 7 6 5.5578 1.9757 1.2025 8 6 6.8549 1.7429 1.0590 9 16 7.1267 0.2631 0.1566 10 6 5.3934 -0.0110 -0.0095 11 6 4.7146 -1.0481 -0.6417 12 6 3.3124 -1.0798 -0.6602 13 6 2.6311 -2.1280 -1.2998 14 1 1.6277 -1.9743 -1.6685 15 6 3.2528 -3.3727 -1.4595 16 7 4.2979 -3.6794 -0.7352 17 14 2.5894 -4.5949 -2.7067 18 1 3.2524 -4.3742 -4.0170 19 1 2.8643 -5.9774 -2.2395 20 1 1.1241 -4.4048 -2.8550 21 1 2.2743 1.7989 2.7095 22 1 5.1859 2.8413 1.7306 23 1 7.6383 2.3777 1.4460 24 1 5.2732 -1.8370 -1.1231 25 1 4.7287 -4.5414 -0.8461 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396208815.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:44 Heat of formation + Delta-G solvation = 51.702077 kcal Electronic energy + Delta-G solvation = -14117.410939 eV Core-core repulsion = 11698.723218 eV Total energy + Delta-G solvation = -2418.687721 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.03817 -37.57133 -36.66736 -34.68669 -31.81010 -30.90320 -27.51046 -24.81312 -23.70924 -21.99850 -20.14328 -18.64700 -18.36783 -17.68666 -16.93951 -16.65470 -15.67185 -15.07341 -14.90076 -14.62385 -14.35563 -13.96579 -13.87390 -13.63182 -13.28033 -13.16376 -12.92400 -12.64074 -12.45687 -11.97325 -11.80212 -11.64035 -11.36150 -10.97814 -10.31080 -9.31391 -9.14957 -8.92955 -8.57002 -6.55597 -0.25923 0.10611 0.66671 0.91882 1.29429 1.36888 1.38667 1.50701 1.57010 1.78273 1.91558 2.11492 2.21919 2.58105 3.27117 3.35815 4.25947 4.44254 4.53263 4.80121 4.83579 4.93270 5.13950 5.20597 5.54161 5.61246 5.72518 5.81272 6.19186 6.47752 6.53171 6.75797 7.98892 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.017647 B = 0.009149 C = 0.006141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.255901 B = 3059.600281 C = 4558.212760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C 0.302 3.698 3 C -0.120 4.120 4 C 0.012 3.988 5 S -0.157 6.157 6 C -0.173 4.173 7 C -0.094 4.094 8 C -0.221 4.221 9 S 0.033 5.967 10 C -0.087 4.087 11 C -0.147 4.147 12 C 0.130 3.870 13 C -0.441 4.441 14 H 0.083 0.917 15 C 0.043 3.957 16 N -0.779 5.779 17 Si 0.983 3.017 18 H -0.252 1.252 19 H -0.259 1.259 20 H -0.264 1.264 21 H 0.114 0.886 22 H 0.156 0.844 23 H 0.192 0.808 24 H 0.125 0.875 25 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.955 3.297 1.173 6.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.162 5.162 2 C -0.009 4.009 3 C -0.129 4.129 4 C -0.104 4.104 5 S 0.001 5.999 6 C -0.182 4.182 7 C -0.123 4.123 8 C -0.354 4.354 9 S 0.293 5.707 10 C -0.204 4.204 11 C -0.173 4.173 12 C 0.120 3.880 13 C -0.469 4.469 14 H 0.101 0.899 15 C -0.179 4.179 16 N -0.401 5.401 17 Si 0.803 3.197 18 H -0.176 1.176 19 H -0.183 1.183 20 H -0.188 1.188 21 H 0.079 0.921 22 H 0.174 0.826 23 H 0.209 0.791 24 H 0.143 0.857 25 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.244 3.280 1.080 6.279 hybrid contribution -0.652 -1.090 0.422 1.339 sum 4.592 2.190 1.503 5.305 Atomic orbital electron populations 1.80992 1.12409 1.11102 1.11728 1.25357 0.92371 0.91165 0.92048 1.17362 0.83764 1.01315 1.10425 1.20921 0.93487 0.95268 1.00773 1.86518 1.74060 1.25409 1.13955 1.17995 0.91577 0.98785 1.09871 1.20036 0.92073 0.99552 1.00636 1.25190 0.99909 1.01705 1.08600 1.83832 1.02217 1.24268 1.60409 1.22758 0.96987 0.98537 1.02081 1.20589 0.93029 0.98394 1.05332 1.18363 0.91337 0.89740 0.88592 1.19821 1.01847 0.95381 1.29872 0.89895 1.26822 0.94134 1.00535 0.96403 1.69762 1.16430 1.23741 1.30199 0.85144 0.79693 0.76572 0.78310 1.17568 1.18328 1.18794 0.92090 0.82610 0.79134 0.85729 0.88366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -22.43 18.54 19.00 0.35 -22.08 15 2 C 0.30 13.87 13.16 88.33 1.16 15.03 15 3 C -0.12 -5.50 5.94 -19.56 -0.12 -5.62 15 4 C 0.01 0.51 6.22 23.53 0.15 0.66 15 5 S -0.16 -5.44 24.00 -56.49 -1.36 -6.80 15 6 C -0.17 -6.93 5.86 -21.20 -0.12 -7.06 15 7 C -0.09 -3.06 9.66 21.66 0.21 -2.85 15 8 C -0.22 -6.46 11.09 66.67 0.74 -5.72 15 9 S 0.03 1.12 23.30 -56.49 -1.32 -0.20 15 10 C -0.09 -3.65 6.44 22.98 0.15 -3.50 15 11 C -0.15 -6.81 8.71 22.98 0.20 -6.61 15 12 C 0.13 6.24 5.72 -19.99 -0.11 6.12 15 13 C -0.44 -21.01 8.54 23.24 0.20 -20.81 15 14 H 0.08 3.98 7.38 -2.91 -0.02 3.96 15 15 C 0.04 1.87 5.13 85.28 0.44 2.30 15 16 N -0.78 -34.54 10.98 21.85 0.24 -34.30 15 17 Si 0.98 33.28 29.60 68.60 2.03 35.31 15 18 H -0.25 -8.15 7.11 99.48 0.71 -7.45 15 19 H -0.26 -8.21 7.11 99.48 0.71 -7.51 15 20 H -0.26 -9.20 7.11 99.48 0.71 -8.49 15 21 H 0.11 3.59 9.55 73.80 0.70 4.30 15 22 H 0.16 4.35 7.69 -2.91 -0.02 4.33 15 23 H 0.19 4.02 8.06 -2.91 -0.02 4.00 15 24 H 0.13 5.90 6.15 -2.91 -0.02 5.88 15 25 H 0.30 11.92 8.30 -92.71 -0.77 11.15 15 Total: -1.00 -50.76 261.33 4.81 -45.95 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: 1.97 Total: 10.16 kcal Atomic # 6 Polarization: -30.93 SS G_CDS: 2.89 Total: -28.05 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: 0.59 Total: -56.38 kcal Atomic # 14 Polarization: 33.28 SS G_CDS: 2.03 Total: 35.31 kcal Atomic # 16 Polarization: -4.33 SS G_CDS: -2.67 Total: -7.00 kcal Total: -50.76 4.81 -45.95 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396208815.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.657 kcal (2) G-P(sol) polarization free energy of solvation -50.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds