Wall clock time and date at job start Mon Mar 30 2020 07:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.38148 * 120.40959 * 43.64251 * 3 2 1 5 5 C 1.41221 * 120.71154 * 180.02562 * 4 3 2 6 6 C 1.45359 * 128.24405 * 180.02562 * 5 4 3 7 7 S 1.76198 * 122.63883 * 359.94008 * 6 5 4 8 8 C 1.33292 * 114.72410 * 179.97438 * 6 5 4 9 9 S 1.75199 * 111.37423 * 0.02562 * 8 6 5 10 10 C 1.40518 * 119.96946 * 359.96925 * 5 4 3 11 11 C 1.38969 * 120.72561 * 359.72683 * 10 5 4 12 12 C 1.40317 * 120.49833 * 0.58211 * 11 10 5 13 13 C 1.40415 * 120.54125 * 179.69739 * 12 11 10 14 14 H 1.08003 * 119.99902 * 154.09537 * 13 12 11 15 15 C 1.39974 * 120.00426 * 334.09565 * 13 12 11 16 16 N 1.30836 * 119.99671 * 334.60250 * 15 13 12 17 17 Si 1.86793 * 120.00140 * 154.60381 * 15 13 12 18 18 H 1.48500 * 109.47014 * 179.97438 * 17 15 13 19 19 H 1.48498 * 109.47034 * 299.99540 * 17 15 13 20 20 H 1.48501 * 109.47197 * 60.00025 * 17 15 13 21 21 H 1.07994 * 119.64701 * 359.96971 * 4 3 2 22 22 H 1.34500 * 102.99889 * 89.99598 * 7 6 5 23 23 H 1.08007 * 124.30533 * 179.97438 * 8 6 5 24 24 H 1.08000 * 119.75060 * 180.28367 * 11 10 5 25 25 H 0.97010 * 119.99946 * 354.23213 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2677 -0.8612 -0.8223 5 6 4.6799 -0.8664 -0.8270 6 6 5.5740 -1.6952 -1.6185 7 16 4.9887 -2.8982 -2.7652 8 6 6.8715 -1.4742 -1.4080 9 16 7.1195 -0.2201 -0.2101 10 6 5.3878 0.0122 0.0105 11 6 4.7136 0.8958 0.8447 12 6 3.3110 0.9177 0.8743 13 6 2.6289 1.8058 1.7215 14 1 1.6293 2.1298 1.4720 15 6 3.2443 2.2710 2.8894 16 7 4.1824 1.5610 3.4618 17 14 2.7264 3.9055 3.6306 18 1 3.5237 4.1683 4.8555 19 1 2.9592 4.9918 2.6453 20 1 1.2841 3.8553 3.9807 21 1 2.7289 -1.5390 -1.4678 22 1 4.8872 -2.2002 -3.9104 23 1 7.6684 -2.0018 -1.9113 24 1 5.2736 1.5675 1.4786 25 1 4.3935 0.6756 3.1264 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396209129.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:22 Heat of formation + Delta-G solvation = 50.455103 kcal Electronic energy + Delta-G solvation = -14007.308240 eV Core-core repulsion = 11588.566446 eV Total energy + Delta-G solvation = -2418.741794 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -38.46517 -35.87018 -35.23218 -33.09395 -30.11846 -29.19288 -25.72534 -23.36438 -21.99635 -20.98597 -18.66152 -17.60829 -16.73750 -16.62019 -15.32705 -14.68192 -14.28875 -13.89753 -13.22442 -13.14066 -12.92365 -12.70337 -12.48059 -11.96760 -11.92823 -11.56527 -11.39355 -11.15624 -10.65618 -10.48511 -10.22674 -10.00527 -9.91020 -9.40776 -8.87982 -7.93161 -7.92283 -7.70952 -7.20301 -4.97305 1.29261 1.68494 1.74899 2.28535 2.49986 2.81302 2.94854 3.05425 3.15086 3.34113 3.58117 3.67402 3.77697 4.21509 4.90743 4.98205 5.37629 5.61552 6.09458 6.13650 6.25253 6.48240 6.63666 6.92675 7.09728 7.16558 7.18489 7.48771 7.52309 8.04148 8.19037 8.46407 9.47707 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.022487 B = 0.007300 C = 0.005636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.883319 B = 3834.678460 C = 4967.075805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C 0.295 3.705 3 C -0.146 4.146 4 C 0.029 3.971 5 C -0.209 4.209 6 C -0.054 4.054 7 S -0.121 6.121 8 C -0.195 4.195 9 S 0.046 5.954 10 C -0.044 4.044 11 C -0.206 4.206 12 C 0.133 3.867 13 C -0.455 4.455 14 H 0.091 0.909 15 C 0.034 3.966 16 N -0.751 5.751 17 Si 1.066 2.934 18 H -0.267 1.267 19 H -0.267 1.267 20 H -0.270 1.270 21 H 0.116 0.884 22 H 0.069 0.931 23 H 0.161 0.839 24 H 0.120 0.880 25 H 0.309 0.691 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.501 -1.325 -4.104 6.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.162 5.162 2 C -0.017 4.017 3 C -0.151 4.151 4 C 0.005 3.995 5 C -0.216 4.216 6 C -0.179 4.179 7 S 0.034 5.966 8 C -0.331 4.331 9 S 0.306 5.694 10 C -0.160 4.160 11 C -0.233 4.233 12 C 0.125 3.875 13 C -0.482 4.482 14 H 0.109 0.891 15 C -0.193 4.193 16 N -0.371 5.371 17 Si 0.887 3.113 18 H -0.191 1.191 19 H -0.192 1.192 20 H -0.195 1.195 21 H 0.134 0.866 22 H 0.033 0.967 23 H 0.178 0.822 24 H 0.138 0.862 25 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.160 -0.521 -2.725 5.859 hybrid contribution -0.674 -0.532 -2.097 2.267 sum 4.486 -1.053 -4.822 6.670 Atomic orbital electron populations 1.81062 1.12400 1.11117 1.11601 1.25575 0.92503 0.91878 0.91712 1.16710 0.83609 1.05220 1.09555 1.20524 0.91440 0.93766 0.93725 1.18150 0.92646 1.04610 1.06188 1.20842 0.94160 1.01238 1.01655 1.85638 1.88817 1.15667 1.06528 1.25262 0.98557 1.04216 1.05110 1.83890 1.05207 1.37643 1.42663 1.22210 0.94450 0.99568 0.99798 1.20290 0.93003 1.03937 1.06040 1.18156 0.90554 0.88723 0.90079 1.20809 1.03410 1.19216 1.04754 0.89145 1.27398 0.92334 1.04998 0.94554 1.70473 1.19827 1.11299 1.35471 0.83588 0.77556 0.72741 0.77372 1.19101 1.19241 1.19468 0.86564 0.96692 0.82182 0.86224 0.87692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -10.99 18.54 41.84 0.78 -10.21 15 2 C 0.29 6.51 14.28 -22.47 -0.32 6.19 15 3 C -0.15 -3.17 5.91 -104.51 -0.62 -3.79 15 4 C 0.03 0.58 9.50 -38.48 -0.37 0.21 15 5 C -0.21 -4.19 6.02 -105.07 -0.63 -4.83 15 6 C -0.05 -0.96 6.22 -38.48 -0.24 -1.20 15 7 S -0.12 -1.84 25.58 -107.50 -2.75 -4.59 15 8 C -0.20 -3.16 10.86 29.01 0.32 -2.84 15 9 S 0.05 0.79 23.23 -107.50 -2.50 -1.71 15 10 C -0.04 -0.90 6.42 -38.45 -0.25 -1.15 15 11 C -0.21 -4.54 7.97 -38.53 -0.31 -4.85 15 12 C 0.13 3.05 5.44 -104.80 -0.57 2.48 15 13 C -0.46 -10.46 8.46 -38.11 -0.32 -10.78 15 14 H 0.09 2.09 7.45 -52.48 -0.39 1.70 15 15 C 0.03 0.75 4.93 -17.33 -0.09 0.66 15 16 N -0.75 -17.11 12.33 55.55 0.68 -16.42 15 17 Si 1.07 18.71 30.00 -169.99 -5.10 13.61 15 18 H -0.27 -4.64 7.11 56.52 0.40 -4.24 15 19 H -0.27 -4.53 7.11 56.52 0.40 -4.12 15 20 H -0.27 -4.61 7.11 56.52 0.40 -4.21 15 21 H 0.12 2.12 7.88 -52.49 -0.41 1.70 15 22 H 0.07 0.97 9.07 97.61 0.89 1.85 15 23 H 0.16 2.12 8.06 -52.48 -0.42 1.70 15 24 H 0.12 2.69 6.50 -52.49 -0.34 2.35 15 25 H 0.31 7.20 6.70 -40.82 -0.27 6.93 15 LS Contribution 262.67 15.07 3.96 3.96 Total: -1.00 -23.51 262.67 -8.07 -31.58 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: 0.25 Total: 3.66 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: -3.39 Total: -19.88 kcal Atomic # 7 Polarization: -28.10 SS G_CDS: 1.46 Total: -26.64 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.10 Total: 13.61 kcal Atomic # 16 Polarization: -1.05 SS G_CDS: -5.25 Total: -6.30 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -23.51 -8.07 -31.58 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396209129.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.032 kcal (2) G-P(sol) polarization free energy of solvation -23.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds