Wall clock time and date at job start Mon Mar 30 2020 07:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.38148 * 120.40959 * 43.64251 * 3 2 1 5 5 C 1.41221 * 120.71154 * 180.02562 * 4 3 2 6 6 C 1.45359 * 128.24405 * 180.02562 * 5 4 3 7 7 S 1.76198 * 122.63883 * 359.94008 * 6 5 4 8 8 C 1.33292 * 114.72410 * 179.97438 * 6 5 4 9 9 S 1.75199 * 111.37423 * 0.02562 * 8 6 5 10 10 C 1.40518 * 119.96946 * 359.96925 * 5 4 3 11 11 C 1.38969 * 120.72561 * 359.72683 * 10 5 4 12 12 C 1.40317 * 120.49833 * 0.58211 * 11 10 5 13 13 C 1.40415 * 120.54125 * 179.69739 * 12 11 10 14 14 H 1.08003 * 119.99902 * 154.09537 * 13 12 11 15 15 C 1.39974 * 120.00426 * 334.09565 * 13 12 11 16 16 N 1.30836 * 119.99671 * 334.60250 * 15 13 12 17 17 Si 1.86793 * 120.00140 * 154.60381 * 15 13 12 18 18 H 1.48500 * 109.47014 * 179.97438 * 17 15 13 19 19 H 1.48498 * 109.47034 * 299.99540 * 17 15 13 20 20 H 1.48501 * 109.47197 * 60.00025 * 17 15 13 21 21 H 1.07994 * 119.64701 * 359.96971 * 4 3 2 22 22 H 1.34500 * 102.99889 * 89.99598 * 7 6 5 23 23 H 1.08007 * 124.30533 * 179.97438 * 8 6 5 24 24 H 1.08000 * 119.75060 * 180.28367 * 11 10 5 25 25 H 0.97010 * 119.99946 * 354.23213 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2677 -0.8612 -0.8223 5 6 4.6799 -0.8664 -0.8270 6 6 5.5740 -1.6952 -1.6185 7 16 4.9887 -2.8982 -2.7652 8 6 6.8715 -1.4742 -1.4080 9 16 7.1195 -0.2201 -0.2101 10 6 5.3878 0.0122 0.0105 11 6 4.7136 0.8958 0.8447 12 6 3.3110 0.9177 0.8743 13 6 2.6289 1.8058 1.7215 14 1 1.6293 2.1298 1.4720 15 6 3.2443 2.2710 2.8894 16 7 4.1824 1.5610 3.4618 17 14 2.7264 3.9055 3.6306 18 1 3.5237 4.1683 4.8555 19 1 2.9592 4.9918 2.6453 20 1 1.2841 3.8553 3.9807 21 1 2.7289 -1.5390 -1.4678 22 1 4.8872 -2.2002 -3.9104 23 1 7.6684 -2.0018 -1.9113 24 1 5.2736 1.5675 1.4786 25 1 4.3935 0.6756 3.1264 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396209129.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:22 Heat of formation + Delta-G solvation = 40.755272 kcal Electronic energy + Delta-G solvation = -14007.728856 eV Core-core repulsion = 11588.566446 eV Total energy + Delta-G solvation = -2419.162410 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.08258 -37.53570 -36.89309 -34.66766 -31.76170 -30.79190 -27.35214 -24.97235 -23.54017 -22.52181 -20.30769 -19.09407 -18.24892 -17.98549 -16.87341 -16.25289 -15.72168 -15.40261 -14.87209 -14.76322 -14.50138 -14.27089 -14.12894 -13.61354 -13.48111 -13.19076 -12.87981 -12.58616 -12.06493 -11.94668 -11.75064 -11.52667 -11.39891 -10.99516 -10.43091 -9.59557 -9.35598 -9.10775 -8.69809 -6.68187 -0.08884 0.04377 0.34708 0.79246 1.01973 1.41966 1.50543 1.63489 1.78911 1.81793 1.98311 2.17426 2.23018 2.55740 3.22526 3.29291 3.96849 4.02340 4.58041 4.60635 4.74917 4.89168 4.97770 5.27147 5.42834 5.48802 5.54702 5.81153 5.84952 6.35196 6.52050 6.70861 7.77101 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.022487 B = 0.007300 C = 0.005636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.883319 B = 3834.678460 C = 4967.075805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C 0.302 3.698 3 C -0.161 4.161 4 C 0.030 3.970 5 C -0.207 4.207 6 C -0.083 4.083 7 S -0.100 6.100 8 C -0.167 4.167 9 S 0.080 5.920 10 C -0.066 4.066 11 C -0.218 4.218 12 C 0.119 3.881 13 C -0.491 4.491 14 H 0.079 0.921 15 C 0.011 3.989 16 N -0.772 5.772 17 Si 1.110 2.890 18 H -0.263 1.263 19 H -0.257 1.257 20 H -0.263 1.263 21 H 0.136 0.864 22 H 0.080 0.920 23 H 0.199 0.801 24 H 0.108 0.892 25 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.988 -2.101 -5.447 9.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.178 5.178 2 C -0.009 4.009 3 C -0.167 4.167 4 C 0.007 3.993 5 C -0.215 4.215 6 C -0.208 4.208 7 S 0.055 5.945 8 C -0.303 4.303 9 S 0.341 5.659 10 C -0.183 4.183 11 C -0.244 4.244 12 C 0.111 3.889 13 C -0.518 4.518 14 H 0.097 0.903 15 C -0.211 4.211 16 N -0.392 5.392 17 Si 0.926 3.074 18 H -0.187 1.187 19 H -0.181 1.181 20 H -0.187 1.187 21 H 0.154 0.846 22 H 0.044 0.956 23 H 0.216 0.784 24 H 0.126 0.874 25 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.650 -1.306 -4.077 7.909 hybrid contribution -0.944 -0.480 -1.889 2.166 sum 5.705 -1.786 -5.966 8.446 Atomic orbital electron populations 1.81042 1.12718 1.11774 1.12289 1.25668 0.92582 0.91411 0.91243 1.16832 0.83461 1.05952 1.10412 1.20726 0.91830 0.93365 0.93385 1.18553 0.92944 1.04277 1.05697 1.20923 0.94272 1.02484 1.03100 1.85589 1.88714 1.14123 1.06096 1.25824 0.99083 1.02382 1.03047 1.83850 1.01975 1.37620 1.42482 1.22551 0.97096 0.99241 0.99419 1.20177 0.92815 1.04698 1.06733 1.18389 0.91249 0.88898 0.90347 1.20834 1.03447 1.21416 1.06123 0.90309 1.28495 0.91539 1.06859 0.94254 1.70564 1.21514 1.11052 1.36085 0.83074 0.77543 0.69813 0.76999 1.18718 1.18149 1.18740 0.84636 0.95595 0.78381 0.87398 0.89125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -22.94 18.54 19.00 0.35 -22.58 15 2 C 0.30 13.54 14.28 88.33 1.26 14.80 15 3 C -0.16 -7.11 5.91 -19.79 -0.12 -7.23 15 4 C 0.03 1.18 9.50 22.98 0.22 1.39 15 5 C -0.21 -7.99 6.02 -20.16 -0.12 -8.11 15 6 C -0.08 -2.68 6.22 22.98 0.14 -2.53 15 7 S -0.10 -2.67 25.58 -56.49 -1.45 -4.12 15 8 C -0.17 -4.71 10.86 66.70 0.72 -3.99 15 9 S 0.08 2.56 23.23 -56.49 -1.31 1.25 15 10 C -0.07 -2.68 6.42 23.00 0.15 -2.53 15 11 C -0.22 -9.81 7.97 22.95 0.18 -9.62 15 12 C 0.12 5.63 5.44 -19.98 -0.11 5.52 15 13 C -0.49 -23.50 8.46 23.22 0.20 -23.30 15 14 H 0.08 3.82 7.45 -2.91 -0.02 3.80 15 15 C 0.01 0.48 4.93 85.26 0.42 0.90 15 16 N -0.77 -36.40 12.33 21.83 0.27 -36.13 15 17 Si 1.11 38.27 30.00 68.60 2.06 40.33 15 18 H -0.26 -8.83 7.11 99.48 0.71 -8.12 15 19 H -0.26 -8.36 7.11 99.48 0.71 -7.65 15 20 H -0.26 -8.69 7.11 99.48 0.71 -7.98 15 21 H 0.14 4.72 7.88 -2.91 -0.02 4.70 15 22 H 0.08 1.94 9.07 73.35 0.67 2.61 15 23 H 0.20 4.10 8.06 -2.91 -0.02 4.08 15 24 H 0.11 5.04 6.50 -2.91 -0.02 5.02 15 25 H 0.30 14.44 6.70 -92.70 -0.62 13.81 15 Total: -1.00 -50.65 262.67 4.95 -45.70 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: 2.08 Total: 10.27 kcal Atomic # 6 Polarization: -37.65 SS G_CDS: 2.95 Total: -34.70 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: 0.62 Total: -58.72 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 2.06 Total: 40.33 kcal Atomic # 16 Polarization: -0.11 SS G_CDS: -2.76 Total: -2.87 kcal Total: -50.65 4.95 -45.70 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396209129.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.454 kcal (2) G-P(sol) polarization free energy of solvation -50.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds