Wall clock time and date at job start Mon Mar 30 2020 07:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.40231 * 120.00795 * 201.39520 * 3 2 1 5 5 C 1.37244 * 120.22098 * 180.02562 * 4 3 2 6 6 C 1.39916 * 120.96039 * 359.97438 * 5 4 3 7 7 S 1.76081 * 129.95855 * 180.02562 * 6 5 4 8 8 C 1.75447 * 91.77830 * 179.97438 * 7 6 5 9 9 C 1.39860 * 124.84951 * 180.02562 * 8 7 6 10 10 H 1.08003 * 119.99876 * 179.97438 * 9 8 7 11 11 C 1.40056 * 120.00289 * 359.97438 * 9 8 7 12 12 N 1.30847 * 119.99488 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00276 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47536 * 60.00022 * 13 11 9 15 15 H 1.48506 * 109.47296 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47054 * 299.99711 * 13 11 9 17 17 C 1.37055 * 110.30325 * 359.97438 * 8 7 6 18 18 C 1.39522 * 115.04965 * 0.02562 * 17 8 7 19 19 C 1.39691 * 120.00520 * 21.42181 * 3 2 1 20 20 S 1.76198 * 120.01322 * 359.95644 * 19 3 2 21 21 H 1.08003 * 119.88524 * 0.02562 * 4 3 2 22 22 H 1.07999 * 119.51581 * 180.02562 * 5 4 3 23 23 H 0.96998 * 119.99369 * 180.02562 * 12 11 9 24 24 H 1.07999 * 122.47318 * 179.72887 * 17 8 7 25 25 H 1.40999 * 100.00101 * 89.99703 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2689 1.1316 0.4430 5 6 4.6413 1.1372 0.4444 6 6 5.3661 0.0229 0.0076 7 16 7.1063 -0.2268 -0.0905 8 6 6.8930 -1.8485 -0.7250 9 6 7.9351 -2.7173 -1.0647 10 1 7.7136 -3.7018 -1.4495 11 6 9.2659 -2.3106 -0.9058 12 7 9.5341 -1.1179 -0.4392 13 14 10.6577 -3.4706 -1.3602 14 1 10.5594 -3.8220 -2.7997 15 1 11.9604 -2.8067 -1.1000 16 1 10.5599 -4.7056 -0.5413 17 6 5.5593 -2.1429 -0.8392 18 6 4.6933 -1.1242 -0.4406 19 6 3.2671 -1.1252 -0.4418 20 16 2.3873 -2.5468 -0.9982 21 1 2.7267 2.0011 0.7842 22 1 5.1695 2.0141 0.7883 23 1 10.4558 -0.8361 -0.3295 24 1 5.2050 -3.0914 -1.2148 25 1 2.2638 -2.2376 -2.3683 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396209322.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:31 Heat of formation + Delta-G solvation = 36.748297 kcal Electronic energy + Delta-G solvation = -13793.052515 eV Core-core repulsion = 11373.716350 eV Total energy + Delta-G solvation = -2419.336165 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.08607 -37.71214 -36.69459 -34.92579 -31.93763 -31.03255 -27.43829 -25.16482 -23.51508 -21.86508 -19.98534 -19.05189 -18.53710 -17.36968 -16.90182 -16.27212 -15.78491 -15.18632 -14.92132 -14.62618 -14.55400 -14.03612 -13.80932 -13.50273 -13.44506 -13.17003 -13.11051 -12.57064 -12.13707 -11.96954 -11.96511 -11.60693 -11.09208 -11.04913 -10.20843 -9.33496 -9.10308 -8.94940 -8.32870 -6.61830 -0.35989 0.16488 0.81863 1.29144 1.33033 1.39371 1.54253 1.62666 1.69045 1.76543 1.85184 2.12335 2.13219 2.83321 2.95036 3.17477 4.18769 4.38252 4.60322 4.72106 4.85642 5.00746 5.21317 5.43137 5.48532 5.60428 5.78653 5.98247 6.09386 6.33536 6.45417 6.50365 7.87504 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.036656 B = 0.005929 C = 0.005119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.671525 B = 4721.095357 C = 5468.596889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.286 3.714 3 C 0.023 3.977 4 C -0.144 4.144 5 C -0.025 4.025 6 C -0.265 4.265 7 S 0.151 5.849 8 C 0.027 3.973 9 C -0.392 4.392 10 H 0.106 0.894 11 C 0.020 3.980 12 N -0.786 5.786 13 Si 1.010 2.990 14 H -0.256 1.256 15 H -0.258 1.258 16 H -0.256 1.256 17 C -0.380 4.380 18 C 0.035 3.965 19 C -0.121 4.121 20 S -0.164 6.164 21 H 0.161 0.839 22 H 0.151 0.849 23 H 0.317 0.683 24 H 0.111 0.889 25 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.389 2.403 0.222 3.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.029 4.029 3 C 0.014 3.986 4 C -0.168 4.168 5 C -0.048 4.048 6 C -0.382 4.382 7 S 0.412 5.588 8 C -0.092 4.092 9 C -0.425 4.425 10 H 0.124 0.876 11 C -0.201 4.201 12 N -0.412 5.412 13 Si 0.828 3.172 14 H -0.180 1.180 15 H -0.182 1.182 16 H -0.180 1.180 17 C -0.405 4.405 18 C 0.025 3.975 19 C -0.238 4.238 20 S -0.006 6.006 21 H 0.178 0.822 22 H 0.168 0.832 23 H 0.131 0.869 24 H 0.129 0.871 25 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.601 2.559 0.535 3.065 hybrid contribution 0.084 -0.486 -1.178 1.277 sum 1.684 2.072 -0.642 2.747 Atomic orbital electron populations 1.81111 1.12340 1.09474 1.09655 1.25572 0.92469 0.91969 0.92854 1.16131 0.83447 0.95395 1.03583 1.20832 0.93392 0.97211 1.05367 1.20610 0.93105 0.95945 0.95135 1.24273 1.02902 0.99100 1.11916 1.84708 0.94415 1.11541 1.68133 1.21850 0.95962 0.96416 0.95010 1.19755 0.90147 1.01221 1.31331 0.87611 1.27246 1.03141 0.97608 0.92074 1.68602 1.25512 1.18466 1.28579 0.84748 0.74588 0.77729 0.80096 1.17999 1.18184 1.17956 1.19716 0.90915 1.02172 1.27652 1.18034 0.91318 0.93310 0.94858 1.20998 0.93446 0.96150 1.13208 1.86493 1.72402 1.29528 1.12206 0.82185 0.83155 0.86879 0.87072 0.93884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -16.36 18.54 19.01 0.35 -16.01 15 2 C 0.29 10.01 14.21 88.33 1.26 11.27 15 3 C 0.02 0.83 5.75 -21.20 -0.12 0.71 15 4 C -0.14 -4.40 9.73 22.52 0.22 -4.18 15 5 C -0.03 -0.84 10.02 22.44 0.22 -0.62 15 6 C -0.26 -10.97 6.47 23.19 0.15 -10.82 15 7 S 0.15 6.60 20.13 -56.49 -1.14 5.47 15 8 C 0.03 1.31 6.11 22.38 0.14 1.45 15 9 C -0.39 -17.83 9.26 23.10 0.21 -17.61 15 10 H 0.11 4.58 7.85 -2.91 -0.02 4.55 15 11 C 0.02 0.81 5.50 85.28 0.47 1.28 15 12 N -0.79 -32.55 10.58 21.85 0.23 -32.32 15 13 Si 1.01 30.33 29.56 68.60 2.03 32.36 15 14 H -0.26 -7.60 7.11 99.48 0.71 -6.89 15 15 H -0.26 -7.17 7.11 99.48 0.71 -6.46 15 16 H -0.26 -7.60 7.11 99.48 0.71 -6.89 15 17 C -0.38 -18.18 9.69 22.30 0.22 -17.97 15 18 C 0.04 1.57 5.84 -21.37 -0.12 1.44 15 19 C -0.12 -4.91 6.25 23.71 0.15 -4.76 15 20 S -0.16 -6.22 24.10 -56.49 -1.36 -7.58 15 21 H 0.16 3.67 8.06 -2.91 -0.02 3.65 15 22 H 0.15 3.94 8.06 -2.91 -0.02 3.92 15 23 H 0.32 11.49 8.30 -92.71 -0.77 10.72 15 24 H 0.11 5.33 7.76 -2.91 -0.02 5.31 15 25 H 0.10 3.40 9.55 73.80 0.70 4.11 15 Total: -1.00 -50.74 262.64 4.86 -45.88 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 1.96 Total: 12.01 kcal Atomic # 6 Polarization: -42.59 SS G_CDS: 2.79 Total: -39.81 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: 0.58 Total: -48.32 kcal Atomic # 14 Polarization: 30.33 SS G_CDS: 2.03 Total: 32.36 kcal Atomic # 16 Polarization: 0.38 SS G_CDS: -2.50 Total: -2.12 kcal Total: -50.74 4.86 -45.88 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396209322.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.628 kcal (2) G-P(sol) polarization free energy of solvation -50.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds