Wall clock time and date at job start Mon Mar 30 2020 07:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39011 * 123.25859 * 299.16384 * 3 2 1 5 5 C 1.39045 * 124.67593 * 359.97438 * 4 3 2 6 6 H 1.08000 * 119.99357 * 0.02562 * 5 4 3 7 7 C 1.40539 * 120.00256 * 179.72171 * 5 4 3 8 8 N 1.30546 * 120.00021 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00282 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47043 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47048 * 120.00045 * 9 7 5 12 12 H 1.48493 * 109.47209 * 240.00291 * 9 7 5 13 13 S 1.75206 * 110.65170 * 180.24845 * 4 3 2 14 14 C 1.75886 * 92.71494 * 359.67733 * 13 4 3 15 15 C 1.39762 * 129.66304 * 180.02562 * 14 13 4 16 16 C 1.37829 * 120.72866 * 180.29600 * 15 14 13 17 17 C 1.38485 * 120.36273 * 0.02562 * 16 15 14 18 18 C 1.38124 * 120.21692 * 0.02562 * 17 16 15 19 19 S 1.76199 * 119.91662 * 179.97438 * 18 17 16 20 20 C 1.39798 * 110.70254 * 0.32430 * 14 13 4 21 21 H 0.96995 * 120.00171 * 179.97438 * 8 7 5 22 22 H 1.07999 * 119.63395 * 0.27832 * 15 14 13 23 23 H 1.07995 * 119.82177 * 180.02562 * 16 15 14 24 24 H 1.08006 * 119.89315 * 179.97438 * 17 16 15 25 25 H 1.34508 * 103.00022 * 270.02379 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3306 -0.5655 1.0151 5 6 2.8085 -1.1932 2.1406 6 1 1.7389 -1.2663 2.2706 7 6 3.6727 -1.7382 3.1056 8 7 4.9656 -1.6547 2.9456 9 14 2.9713 -2.5822 4.6173 10 1 1.4878 -2.5447 4.5616 11 1 3.4293 -3.9943 4.6530 12 1 3.4392 -1.8790 5.8386 13 16 5.0403 -0.3722 0.6846 14 6 4.7378 0.4661 -0.8318 15 6 5.6442 0.9853 -1.7603 16 6 5.1992 1.6208 -2.8995 17 6 3.8423 1.7551 -3.1414 18 6 2.9227 1.2530 -2.2413 19 16 1.1981 1.4289 -2.5567 20 6 3.3646 0.5932 -1.0608 21 1 5.5620 -2.0305 3.6118 22 1 6.7051 0.8877 -1.5830 23 1 5.9125 2.0162 -3.6073 24 1 3.5019 2.2549 -4.0363 25 1 0.9020 2.6039 -1.9728 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396209589.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:59 Heat of formation + Delta-G solvation = 27.957456 kcal Electronic energy + Delta-G solvation = -14086.308102 eV Core-core repulsion = 11666.590737 eV Total energy + Delta-G solvation = -2419.717365 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.86705 -37.50770 -36.39971 -34.70845 -31.62348 -31.11527 -27.75135 -24.80530 -23.42811 -22.36899 -20.33044 -18.84771 -18.01762 -17.47977 -17.11938 -16.02617 -15.81680 -15.31405 -15.05023 -14.59816 -14.37565 -13.76124 -13.60243 -13.51055 -13.32476 -13.25693 -12.86538 -12.55224 -12.10767 -12.01288 -11.93036 -11.66988 -11.12598 -11.04539 -10.13658 -9.45686 -9.16129 -8.92928 -8.29626 -6.89407 -0.03545 0.48780 0.80028 0.98968 1.22544 1.32689 1.52294 1.55292 1.67921 1.88615 2.07951 2.44331 2.51210 2.77707 3.31767 4.03355 4.18637 4.23162 4.54867 4.67330 4.75770 4.95078 5.09325 5.27653 5.53799 5.56663 5.63285 5.82937 6.01453 6.16136 6.29723 7.30566 7.68928 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.025084 B = 0.008047 C = 0.006113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.959461 B = 3478.623005 C = 4579.077914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C 0.329 3.671 3 C -0.332 4.332 4 C 0.051 3.949 5 C -0.360 4.360 6 H 0.093 0.907 7 C 0.027 3.973 8 N -0.754 5.754 9 Si 1.006 2.994 10 H -0.265 1.265 11 H -0.247 1.247 12 H -0.248 1.248 13 S 0.181 5.819 14 C -0.265 4.265 15 C -0.032 4.032 16 C -0.170 4.170 17 C -0.047 4.047 18 C -0.164 4.164 19 S -0.148 6.148 20 C 0.051 3.949 21 H 0.327 0.673 22 H 0.146 0.854 23 H 0.164 0.836 24 H 0.148 0.852 25 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.824 1.020 -1.046 7.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.227 5.227 2 C 0.020 3.980 3 C -0.344 4.344 4 C -0.071 4.071 5 C -0.394 4.394 6 H 0.111 0.889 7 C -0.198 4.198 8 N -0.378 5.378 9 Si 0.824 3.176 10 H -0.189 1.189 11 H -0.171 1.171 12 H -0.171 1.171 13 S 0.440 5.560 14 C -0.380 4.380 15 C -0.055 4.055 16 C -0.192 4.192 17 C -0.069 4.069 18 C -0.278 4.278 19 S 0.010 5.990 20 C 0.041 3.959 21 H 0.142 0.858 22 H 0.164 0.836 23 H 0.181 0.819 24 H 0.166 0.834 25 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges 6.685 0.476 -0.515 6.721 hybrid contribution -0.666 0.960 0.415 1.240 sum 6.019 1.436 -0.101 6.188 Atomic orbital electron populations 1.80893 1.12753 1.16381 1.12689 1.24965 0.91980 0.90626 0.90421 1.15631 0.84553 1.30368 1.03863 1.21629 0.96904 0.93868 0.94706 1.19789 0.96575 1.22950 1.00050 0.88862 1.27273 0.94468 0.94842 1.03224 1.68424 1.04819 1.29193 1.35315 0.84728 0.79438 0.78773 0.74709 1.18930 1.17087 1.17133 1.84484 1.01874 1.58584 1.11034 1.23858 0.95758 1.12164 1.06257 1.20940 0.98895 0.93778 0.91874 1.21128 0.94927 1.04251 0.98893 1.21486 0.92989 0.95385 0.97083 1.21145 0.93720 1.12700 1.00248 1.85654 1.09147 1.30480 1.73675 1.18936 0.92226 0.93172 0.91610 0.85780 0.83633 0.81900 0.83426 0.98091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -28.81 18.30 19.00 0.35 -28.46 15 2 C 0.33 17.19 12.20 88.33 1.08 18.27 15 3 C -0.33 -16.79 5.95 -20.03 -0.12 -16.91 15 4 C 0.05 2.50 6.13 22.65 0.14 2.64 15 5 C -0.36 -16.79 8.91 23.03 0.21 -16.58 15 6 H 0.09 4.49 7.37 -2.91 -0.02 4.47 15 7 C 0.03 1.08 5.50 85.45 0.47 1.55 15 8 N -0.75 -29.28 10.54 21.93 0.23 -29.05 15 9 Si 1.01 30.21 29.57 68.60 2.03 32.23 15 10 H -0.27 -8.58 7.11 99.48 0.71 -7.87 15 11 H -0.25 -6.87 7.11 99.48 0.71 -6.16 15 12 H -0.25 -6.87 7.11 99.48 0.71 -6.16 15 13 S 0.18 7.63 20.00 -56.49 -1.13 6.50 15 14 C -0.26 -10.94 6.42 23.02 0.15 -10.79 15 15 C -0.03 -1.06 10.05 22.54 0.23 -0.83 15 16 C -0.17 -4.88 10.02 22.23 0.22 -4.66 15 17 C -0.05 -1.54 9.74 22.30 0.22 -1.33 15 18 C -0.16 -6.85 6.19 23.25 0.14 -6.71 15 19 S -0.15 -6.18 22.99 -56.49 -1.30 -7.48 15 20 C 0.05 2.37 6.01 -20.08 -0.12 2.25 15 21 H 0.33 10.69 8.29 -92.71 -0.77 9.92 15 22 H 0.15 3.76 8.06 -2.91 -0.02 3.73 15 23 H 0.16 3.22 8.06 -2.91 -0.02 3.20 15 24 H 0.15 3.97 8.06 -2.91 -0.02 3.95 15 25 H 0.05 2.27 9.07 73.35 0.67 2.93 15 Total: -1.00 -56.06 258.75 4.71 -51.34 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: 1.93 Total: 8.01 kcal Atomic # 6 Polarization: -35.71 SS G_CDS: 2.61 Total: -33.10 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: 0.58 Total: -57.51 kcal Atomic # 14 Polarization: 30.21 SS G_CDS: 2.03 Total: 32.23 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -2.43 Total: -0.98 kcal Total: -56.06 4.71 -51.34 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396209589.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.302 kcal (2) G-P(sol) polarization free energy of solvation -56.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds