Wall clock time and date at job start Mon Mar 30 2020 07:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.38050 * 120.14185 * 110.01455 * 3 2 1 5 5 C 1.40718 * 120.00477 * 180.02562 * 4 3 2 6 6 C 1.41000 * 119.77568 * 179.97438 * 5 4 3 7 7 H 1.08001 * 119.99450 * 205.25718 * 6 5 4 8 8 C 1.39674 * 120.00486 * 25.25557 * 6 5 4 9 9 N 1.31011 * 119.99650 * 18.20426 * 8 6 5 10 10 Si 1.86802 * 120.00150 * 198.20320 * 8 6 5 11 11 H 1.48506 * 109.46808 * 60.00239 * 10 8 6 12 12 H 1.48503 * 109.47017 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47074 * 299.99995 * 10 8 6 14 14 C 1.40459 * 120.44449 * 0.02562 * 5 4 3 15 15 C 1.38372 * 121.11367 * 359.97438 * 14 5 4 16 16 S 1.76093 * 130.19808 * 180.02562 * 15 14 5 17 17 C 1.75470 * 91.64213 * 179.97438 * 16 15 14 18 18 S 1.76194 * 124.75565 * 179.97438 * 17 16 15 19 19 C 1.35323 * 110.49492 * 0.02562 * 17 16 15 20 20 C 1.39344 * 115.48498 * 359.73046 * 19 17 16 21 21 H 1.08004 * 119.99723 * 359.97438 * 4 3 2 22 22 H 0.97002 * 120.00160 * 180.02562 * 9 8 6 23 23 H 1.07997 * 119.44381 * 180.02562 * 14 5 4 24 24 H 1.41003 * 99.99676 * 0.03133 * 18 17 16 25 25 H 1.08002 * 122.25864 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2611 0.4096 -1.1217 5 6 4.6682 0.4085 -1.1188 6 6 5.3712 0.8266 -2.2673 7 1 6.3737 0.4674 -2.4473 8 6 4.7711 1.7052 -3.1722 9 7 3.7329 2.4151 -2.8055 10 14 5.4489 1.8680 -4.9053 11 1 5.3844 0.5506 -5.5878 12 1 4.6402 2.8572 -5.6622 13 1 6.8604 2.3251 -4.8439 14 6 5.3772 -0.0072 0.0203 15 6 4.7155 -0.4234 1.1620 16 16 5.3532 -0.9856 2.7041 17 6 3.7365 -1.2185 3.3452 18 16 3.3737 -1.8092 4.9650 19 6 2.8072 -0.8819 2.4208 20 6 3.3099 -0.4321 1.2016 21 1 2.7232 0.7295 -2.0020 22 1 3.3158 3.0250 -3.4340 23 1 6.4571 -0.0012 0.0050 24 1 4.6822 -1.9892 5.4587 25 1 1.7475 -0.9525 2.6166 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396209716.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:44 Heat of formation + Delta-G solvation = 51.458201 kcal Electronic energy + Delta-G solvation = -13834.553690 eV Core-core repulsion = 11415.855394 eV Total energy + Delta-G solvation = -2418.698296 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.08582 -37.45146 -36.90611 -34.62477 -32.06032 -30.64755 -27.27498 -24.48662 -24.45449 -21.75985 -20.75656 -18.45566 -18.16796 -17.53851 -16.88497 -16.59509 -15.77832 -15.27213 -15.05672 -14.59260 -14.27025 -14.09250 -14.04608 -13.77273 -13.39427 -13.00248 -12.80543 -12.65748 -12.34916 -12.07685 -11.82368 -11.60200 -11.55230 -11.10870 -10.43214 -9.91233 -8.93866 -8.69371 -8.40280 -6.38793 -0.42813 0.44817 0.47239 0.59590 1.04946 1.27858 1.45712 1.57206 1.62569 1.65191 1.68353 2.04194 2.17557 2.67387 3.07193 3.45594 4.10487 4.34228 4.70801 4.79320 4.92322 5.03671 5.07372 5.19198 5.58501 5.65360 5.74597 5.88139 6.29162 6.49900 6.61605 6.66431 8.07241 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.029112 B = 0.005896 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.585752 B = 4747.718069 C = 5624.029567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C 0.287 3.713 3 C -0.003 4.003 4 C -0.070 4.070 5 C 0.102 3.898 6 C -0.439 4.439 7 H 0.103 0.897 8 C 0.037 3.963 9 N -0.799 5.799 10 Si 0.987 3.013 11 H -0.256 1.256 12 H -0.271 1.271 13 H -0.254 1.254 14 C -0.215 4.215 15 C -0.069 4.069 16 S 0.076 5.924 17 C -0.244 4.244 18 S -0.067 6.067 19 C -0.054 4.054 20 C -0.175 4.175 21 H 0.129 0.871 22 H 0.301 0.699 23 H 0.115 0.885 24 H 0.116 0.884 25 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.378 -3.146 3.512 6.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.026 4.026 3 C -0.010 4.010 4 C -0.092 4.092 5 C 0.095 3.905 6 C -0.467 4.467 7 H 0.121 0.879 8 C -0.183 4.183 9 N -0.423 5.423 10 Si 0.807 3.193 11 H -0.180 1.180 12 H -0.195 1.195 13 H -0.178 1.178 14 C -0.242 4.242 15 C -0.186 4.186 16 S 0.335 5.665 17 C -0.470 4.470 18 S 0.093 5.907 19 C -0.090 4.090 20 C -0.184 4.184 21 H 0.147 0.853 22 H 0.112 0.888 23 H 0.133 0.867 24 H 0.080 0.920 25 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.393 -3.527 5.041 7.026 hybrid contribution 0.224 0.769 -1.873 2.037 sum 3.617 -2.758 3.168 5.543 Atomic orbital electron populations 1.81084 1.12454 1.11355 1.09610 1.25925 0.92793 0.91963 0.91898 1.16774 0.82653 1.06428 0.95135 1.21496 0.95020 0.96739 0.95989 1.17510 0.91045 0.89708 0.92206 1.20044 1.02572 1.21099 1.02982 0.87931 1.26901 0.94091 0.92671 1.04633 1.69859 1.17941 1.16049 1.38402 0.85120 0.79553 0.79502 0.75104 1.17995 1.19515 1.17814 1.20229 0.98553 1.13985 0.91475 1.22234 0.95425 1.03100 0.97839 1.83441 1.04839 1.71363 1.06845 1.24968 0.98987 1.20502 1.02564 1.86317 1.14371 1.83428 1.06535 1.19645 0.99118 0.99157 0.91075 1.18223 0.91455 1.14478 0.94247 0.85347 0.88813 0.86745 0.92004 0.85129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -19.97 18.54 19.00 0.35 -19.62 15 2 C 0.29 12.12 15.03 88.33 1.33 13.45 15 3 C 0.00 -0.14 5.93 -19.58 -0.12 -0.26 15 4 C -0.07 -3.14 8.31 22.83 0.19 -2.95 15 5 C 0.10 4.59 5.55 -21.46 -0.12 4.47 15 6 C -0.44 -19.01 8.99 23.29 0.21 -18.80 15 7 H 0.10 4.12 7.91 -2.91 -0.02 4.09 15 8 C 0.04 1.50 5.10 85.16 0.43 1.93 15 9 N -0.80 -34.82 10.99 21.78 0.24 -34.58 15 10 Si 0.99 31.05 29.60 68.60 2.03 33.08 15 11 H -0.26 -7.93 7.11 99.48 0.71 -7.22 15 12 H -0.27 -8.30 7.11 99.48 0.71 -7.60 15 13 H -0.25 -7.73 7.11 99.48 0.71 -7.03 15 14 C -0.22 -9.14 9.71 22.84 0.22 -8.91 15 15 C -0.07 -2.82 6.43 22.88 0.15 -2.67 15 16 S 0.08 2.60 23.28 -56.49 -1.32 1.29 15 17 C -0.24 -8.35 6.76 67.15 0.45 -7.89 15 18 S -0.07 -1.83 26.18 -56.49 -1.48 -3.31 15 19 C -0.05 -2.03 9.75 21.86 0.21 -1.82 15 20 C -0.17 -7.30 6.01 -19.93 -0.12 -7.42 15 21 H 0.13 5.90 6.17 -2.91 -0.02 5.89 15 22 H 0.30 11.85 8.30 -92.71 -0.77 11.08 15 23 H 0.11 4.51 8.06 -2.91 -0.02 4.49 15 24 H 0.12 2.62 9.55 73.80 0.70 3.33 15 25 H 0.13 4.74 8.00 -2.91 -0.02 4.72 15 Total: -1.00 -46.91 265.45 4.64 -42.27 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 1.97 Total: 11.76 kcal Atomic # 6 Polarization: -33.72 SS G_CDS: 2.84 Total: -30.88 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: 0.59 Total: -54.20 kcal Atomic # 14 Polarization: 31.05 SS G_CDS: 2.03 Total: 33.08 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.79 Total: -2.02 kcal Total: -46.91 4.64 -42.27 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396209716.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.730 kcal (2) G-P(sol) polarization free energy of solvation -46.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds