Wall clock time and date at job start Mon Mar 30 2020 07:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.35349 * 123.13082 * 217.94550 * 3 2 1 5 5 S 1.70036 * 111.93474 * 180.02562 * 4 3 2 6 6 C 1.75882 * 93.03005 * 0.02562 * 5 4 3 7 7 C 1.40261 * 130.25281 * 179.97438 * 6 5 4 8 8 C 1.37445 * 121.66441 * 179.97438 * 7 6 5 9 9 C 1.38823 * 121.05936 * 0.02562 * 8 7 6 10 10 S 1.76197 * 120.14907 * 180.02562 * 9 8 7 11 11 C 1.41293 * 119.69361 * 359.97438 * 9 8 7 12 12 C 1.40401 * 120.48682 * 180.02562 * 11 9 8 13 13 H 1.08000 * 120.00187 * 134.33173 * 12 11 9 14 14 C 1.39916 * 120.00128 * 314.33509 * 12 11 9 15 15 N 1.30929 * 120.00109 * 339.33787 * 14 12 11 16 16 Si 1.86797 * 120.00034 * 159.33540 * 14 12 11 17 17 H 1.48501 * 109.47334 * 89.99876 * 16 14 12 18 18 H 1.48498 * 109.47309 * 210.00132 * 16 14 12 19 19 H 1.48503 * 109.47338 * 330.00099 * 16 14 12 20 20 C 1.39060 * 109.87845 * 359.97438 * 6 5 4 21 21 H 1.08001 * 124.03708 * 0.02761 * 4 3 2 22 22 H 1.08004 * 119.16860 * 0.28180 * 7 6 5 23 23 H 1.07997 * 119.46832 * 180.02562 * 8 7 6 24 24 H 1.41007 * 99.99918 * 90.00133 * 10 9 8 25 25 H 0.96996 * 119.99983 * 185.13248 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3073 0.8948 0.6970 5 16 4.9755 0.6356 0.4934 6 6 4.7262 -0.7367 -0.5780 7 6 5.6575 -1.5628 -1.2243 8 6 5.2617 -2.6007 -2.0338 9 6 3.9167 -2.8723 -2.2441 10 16 3.4362 -4.2095 -3.2860 11 6 2.9348 -2.0721 -1.6179 12 6 1.5698 -2.3322 -1.8186 13 1 0.8927 -2.3431 -0.9773 14 6 1.0866 -2.5775 -3.1086 15 7 1.7727 -2.1813 -4.1510 16 14 -0.5373 -3.4701 -3.3436 17 1 -1.6444 -2.4812 -3.3854 18 1 -0.5043 -4.2303 -4.6188 19 1 -0.7545 -4.4086 -2.2134 20 6 3.3647 -0.9604 -0.7510 21 1 2.8879 1.6793 1.3094 22 1 6.7122 -1.3817 -1.0784 23 1 6.0092 -3.2149 -2.5138 24 1 3.3705 -5.2491 -2.3356 25 1 1.4037 -2.2843 -5.0421 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396209753.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:57 Heat of formation + Delta-G solvation = 56.146651 kcal Electronic energy + Delta-G solvation = -14407.837883 eV Core-core repulsion = 11989.342893 eV Total energy + Delta-G solvation = -2418.494990 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.88854 -37.58641 -36.01865 -35.17874 -31.77795 -30.21620 -27.12166 -25.61200 -23.14813 -22.61784 -19.83706 -18.57469 -17.84847 -17.64316 -16.85434 -16.12531 -15.83117 -15.41791 -15.08625 -14.61312 -14.22191 -14.04874 -13.72836 -13.49885 -13.20139 -13.11700 -12.93646 -12.85248 -12.30922 -12.07347 -11.69463 -11.50811 -11.33756 -10.90098 -9.85497 -9.24769 -8.76528 -8.46072 -8.18093 -6.46648 -0.17829 0.45159 0.71902 1.01698 1.07489 1.33114 1.38418 1.41969 1.42914 1.82141 2.14984 2.19915 2.53407 2.75485 3.34593 3.37088 3.94625 4.37892 4.57926 4.68366 4.97825 5.00709 5.16730 5.31550 5.50111 5.67960 5.87055 5.98908 6.40058 6.60990 6.68505 6.79210 8.26586 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.020451 B = 0.010212 C = 0.007127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.768999 B = 2741.329659 C = 3927.730621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C 0.303 3.697 3 C -0.036 4.036 4 C -0.206 4.206 5 S 0.237 5.763 6 C -0.118 4.118 7 C -0.208 4.208 8 C -0.020 4.020 9 C -0.220 4.220 10 S -0.131 6.131 11 C 0.166 3.834 12 C -0.484 4.484 13 H 0.069 0.931 14 C 0.089 3.911 15 N -0.774 5.774 16 Si 0.943 3.057 17 H -0.273 1.273 18 H -0.252 1.252 19 H -0.265 1.265 20 C -0.152 4.152 21 H 0.201 0.799 22 H 0.139 0.861 23 H 0.130 0.870 24 H 0.040 0.960 25 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.148 2.998 4.805 9.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.150 5.150 2 C -0.012 4.012 3 C -0.054 4.054 4 C -0.346 4.346 5 S 0.505 5.495 6 C -0.233 4.233 7 C -0.234 4.234 8 C -0.044 4.044 9 C -0.336 4.336 10 S 0.026 5.974 11 C 0.158 3.842 12 C -0.511 4.511 13 H 0.087 0.913 14 C -0.134 4.134 15 N -0.396 5.396 16 Si 0.765 3.235 17 H -0.199 1.199 18 H -0.175 1.175 19 H -0.189 1.189 20 C -0.162 4.162 21 H 0.218 0.782 22 H 0.157 0.843 23 H 0.148 0.852 24 H 0.005 0.995 25 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.442 3.169 4.395 8.418 hybrid contribution -1.742 -1.049 0.277 2.052 sum 4.700 2.120 4.672 6.958 Atomic orbital electron populations 1.81050 1.12910 1.10358 1.10670 1.25301 0.92386 0.91708 0.91823 1.15974 0.84594 1.00393 1.04488 1.25272 1.00177 1.03929 1.05213 1.82100 0.99353 1.24417 1.43592 1.22844 0.95777 1.01556 1.03140 1.19937 0.97888 0.99805 1.05746 1.21073 0.93920 0.95452 0.93907 1.21052 0.95101 1.03920 1.13516 1.86208 1.93601 1.03710 1.13860 1.18697 0.93123 0.86485 0.85853 1.19286 0.93680 1.43889 0.94220 0.91347 1.25987 1.00853 0.92098 0.94475 1.69637 1.37564 1.31857 1.00569 0.85781 0.78449 0.79622 0.79682 1.19851 1.17537 1.18866 1.20208 0.91529 0.98338 1.06093 0.78214 0.84328 0.85178 0.99477 0.89506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -21.46 18.50 19.00 0.35 -21.11 15 2 C 0.30 13.01 13.33 88.33 1.18 14.18 15 3 C -0.04 -1.40 5.85 -20.78 -0.12 -1.52 15 4 C -0.21 -5.93 10.65 67.15 0.71 -5.21 15 5 S 0.24 6.18 22.98 -56.49 -1.30 4.88 15 6 C -0.12 -4.36 6.46 22.96 0.15 -4.21 15 7 C -0.21 -7.48 10.00 22.57 0.23 -7.25 15 8 C -0.02 -0.79 9.70 22.22 0.22 -0.57 15 9 C -0.22 -10.35 5.79 23.16 0.13 -10.22 15 10 S -0.13 -5.91 21.62 -56.49 -1.22 -7.13 15 11 C 0.17 8.28 5.43 -19.59 -0.11 8.18 15 12 C -0.48 -25.16 7.37 23.20 0.17 -24.99 15 13 H 0.07 3.69 6.92 -2.91 -0.02 3.67 15 14 C 0.09 4.41 3.66 85.23 0.31 4.72 15 15 N -0.77 -38.98 11.17 21.83 0.24 -38.74 15 16 Si 0.94 40.03 29.61 68.60 2.03 42.06 15 17 H -0.27 -11.63 7.11 99.48 0.71 -10.92 15 18 H -0.25 -9.93 7.11 99.48 0.71 -9.22 15 19 H -0.26 -11.32 7.11 99.48 0.71 -10.61 15 20 C -0.15 -6.72 6.19 -18.75 -0.12 -6.84 15 21 H 0.20 4.18 8.06 -2.91 -0.02 4.15 15 22 H 0.14 3.94 8.06 -2.91 -0.02 3.92 15 23 H 0.13 4.51 8.06 -2.91 -0.02 4.49 15 24 H 0.04 1.73 9.55 73.80 0.70 2.43 15 25 H 0.29 13.61 8.31 -92.71 -0.77 12.84 15 Total: -1.00 -57.86 258.56 4.83 -53.03 By element: Atomic # 1 Polarization: -1.22 SS G_CDS: 1.97 Total: 0.75 kcal Atomic # 6 Polarization: -36.50 SS G_CDS: 2.75 Total: -33.74 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: 0.60 Total: -59.85 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 2.03 Total: 42.06 kcal Atomic # 16 Polarization: 0.27 SS G_CDS: -2.52 Total: -2.25 kcal Total: -57.86 4.83 -53.03 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396209753.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.177 kcal (2) G-P(sol) polarization free energy of solvation -57.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds