Wall clock time and date at job start Mon Mar 30 2020 07:25:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13596 * 1
3 3 C 1.43201 * 179.97438 * 2 1
4 4 C 1.35349 * 123.13082 * 217.94550 * 3 2 1
5 5 S 1.70036 * 111.93474 * 180.02562 * 4 3 2
6 6 C 1.75882 * 93.03005 * 0.02562 * 5 4 3
7 7 C 1.40261 * 130.25281 * 179.97438 * 6 5 4
8 8 C 1.37445 * 121.66441 * 179.97438 * 7 6 5
9 9 C 1.38823 * 121.05936 * 0.02562 * 8 7 6
10 10 S 1.76197 * 120.14907 * 180.02562 * 9 8 7
11 11 C 1.41293 * 119.69361 * 359.97438 * 9 8 7
12 12 C 1.40401 * 120.48682 * 180.02562 * 11 9 8
13 13 H 1.08000 * 120.00187 * 134.33173 * 12 11 9
14 14 C 1.39916 * 120.00128 * 314.33509 * 12 11 9
15 15 N 1.30929 * 120.00109 * 339.33787 * 14 12 11
16 16 Si 1.86797 * 120.00034 * 159.33540 * 14 12 11
17 17 H 1.48501 * 109.47334 * 89.99876 * 16 14 12
18 18 H 1.48498 * 109.47309 * 210.00132 * 16 14 12
19 19 H 1.48503 * 109.47338 * 330.00099 * 16 14 12
20 20 C 1.39060 * 109.87845 * 359.97438 * 6 5 4
21 21 H 1.08001 * 124.03708 * 0.02761 * 4 3 2
22 22 H 1.08004 * 119.16860 * 0.28180 * 7 6 5
23 23 H 1.07997 * 119.46832 * 180.02562 * 8 7 6
24 24 H 1.41007 * 99.99918 * 90.00133 * 10 9 8
25 25 H 0.96996 * 119.99983 * 185.13248 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.5680 0.0006 0.0000
4 6 3.3073 0.8948 0.6970
5 16 4.9755 0.6356 0.4934
6 6 4.7262 -0.7367 -0.5780
7 6 5.6575 -1.5628 -1.2243
8 6 5.2617 -2.6007 -2.0338
9 6 3.9167 -2.8723 -2.2441
10 16 3.4362 -4.2095 -3.2860
11 6 2.9348 -2.0721 -1.6179
12 6 1.5698 -2.3322 -1.8186
13 1 0.8927 -2.3431 -0.9773
14 6 1.0866 -2.5775 -3.1086
15 7 1.7727 -2.1813 -4.1510
16 14 -0.5373 -3.4701 -3.3436
17 1 -1.6444 -2.4812 -3.3854
18 1 -0.5043 -4.2303 -4.6188
19 1 -0.7545 -4.4086 -2.2134
20 6 3.3647 -0.9604 -0.7510
21 1 2.8879 1.6793 1.3094
22 1 6.7122 -1.3817 -1.0784
23 1 6.0092 -3.2149 -2.5138
24 1 3.3705 -5.2491 -2.3356
25 1 1.4037 -2.2843 -5.0421
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000396209753.mol2 25
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:25:57
Heat of formation + Delta-G solvation = 56.146651 kcal
Electronic energy + Delta-G solvation = -14407.837883 eV
Core-core repulsion = 11989.342893 eV
Total energy + Delta-G solvation = -2418.494990 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 260.998 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-39.88854 -37.58641 -36.01865 -35.17874 -31.77795 -30.21620 -27.12166 -25.61200
-23.14813 -22.61784 -19.83706 -18.57469 -17.84847 -17.64316 -16.85434 -16.12531
-15.83117 -15.41791 -15.08625 -14.61312 -14.22191 -14.04874 -13.72836 -13.49885
-13.20139 -13.11700 -12.93646 -12.85248 -12.30922 -12.07347 -11.69463 -11.50811
-11.33756 -10.90098 -9.85497 -9.24769 -8.76528 -8.46072 -8.18093 -6.46648
-0.17829 0.45159 0.71902 1.01698 1.07489 1.33114 1.38418 1.41969
1.42914 1.82141 2.14984 2.19915 2.53407 2.75485 3.34593 3.37088
3.94625 4.37892 4.57926 4.68366 4.97825 5.00709 5.16730 5.31550
5.50111 5.67960 5.87055 5.98908 6.40058 6.60990 6.68505 6.79210
8.26586
Molecular weight = 261.00amu
Principal moments of inertia in cm(-1)
A = 0.020451 B = 0.010212 C = 0.007127
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1368.768999 B = 2741.329659 C = 3927.730621
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.472 5.472
2 C 0.303 3.697
3 C -0.036 4.036
4 C -0.206 4.206
5 S 0.237 5.763
6 C -0.118 4.118
7 C -0.208 4.208
8 C -0.020 4.020
9 C -0.220 4.220
10 S -0.131 6.131
11 C 0.166 3.834
12 C -0.484 4.484
13 H 0.069 0.931
14 C 0.089 3.911
15 N -0.774 5.774
16 Si 0.943 3.057
17 H -0.273 1.273
18 H -0.252 1.252
19 H -0.265 1.265
20 C -0.152 4.152
21 H 0.201 0.799
22 H 0.139 0.861
23 H 0.130 0.870
24 H 0.040 0.960
25 H 0.294 0.706
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.148 2.998 4.805 9.120
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.150 5.150
2 C -0.012 4.012
3 C -0.054 4.054
4 C -0.346 4.346
5 S 0.505 5.495
6 C -0.233 4.233
7 C -0.234 4.234
8 C -0.044 4.044
9 C -0.336 4.336
10 S 0.026 5.974
11 C 0.158 3.842
12 C -0.511 4.511
13 H 0.087 0.913
14 C -0.134 4.134
15 N -0.396 5.396
16 Si 0.765 3.235
17 H -0.199 1.199
18 H -0.175 1.175
19 H -0.189 1.189
20 C -0.162 4.162
21 H 0.218 0.782
22 H 0.157 0.843
23 H 0.148 0.852
24 H 0.005 0.995
25 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges 6.442 3.169 4.395 8.418
hybrid contribution -1.742 -1.049 0.277 2.052
sum 4.700 2.120 4.672 6.958
Atomic orbital electron populations
1.81050 1.12910 1.10358 1.10670 1.25301 0.92386 0.91708 0.91823
1.15974 0.84594 1.00393 1.04488 1.25272 1.00177 1.03929 1.05213
1.82100 0.99353 1.24417 1.43592 1.22844 0.95777 1.01556 1.03140
1.19937 0.97888 0.99805 1.05746 1.21073 0.93920 0.95452 0.93907
1.21052 0.95101 1.03920 1.13516 1.86208 1.93601 1.03710 1.13860
1.18697 0.93123 0.86485 0.85853 1.19286 0.93680 1.43889 0.94220
0.91347 1.25987 1.00853 0.92098 0.94475 1.69637 1.37564 1.31857
1.00569 0.85781 0.78449 0.79622 0.79682 1.19851 1.17537 1.18866
1.20208 0.91529 0.98338 1.06093 0.78214 0.84328 0.85178 0.99477
0.89506
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.47 -21.46 18.50 19.00 0.35 -21.11 15
2 C 0.30 13.01 13.33 88.33 1.18 14.18 15
3 C -0.04 -1.40 5.85 -20.78 -0.12 -1.52 15
4 C -0.21 -5.93 10.65 67.15 0.71 -5.21 15
5 S 0.24 6.18 22.98 -56.49 -1.30 4.88 15
6 C -0.12 -4.36 6.46 22.96 0.15 -4.21 15
7 C -0.21 -7.48 10.00 22.57 0.23 -7.25 15
8 C -0.02 -0.79 9.70 22.22 0.22 -0.57 15
9 C -0.22 -10.35 5.79 23.16 0.13 -10.22 15
10 S -0.13 -5.91 21.62 -56.49 -1.22 -7.13 15
11 C 0.17 8.28 5.43 -19.59 -0.11 8.18 15
12 C -0.48 -25.16 7.37 23.20 0.17 -24.99 15
13 H 0.07 3.69 6.92 -2.91 -0.02 3.67 15
14 C 0.09 4.41 3.66 85.23 0.31 4.72 15
15 N -0.77 -38.98 11.17 21.83 0.24 -38.74 15
16 Si 0.94 40.03 29.61 68.60 2.03 42.06 15
17 H -0.27 -11.63 7.11 99.48 0.71 -10.92 15
18 H -0.25 -9.93 7.11 99.48 0.71 -9.22 15
19 H -0.26 -11.32 7.11 99.48 0.71 -10.61 15
20 C -0.15 -6.72 6.19 -18.75 -0.12 -6.84 15
21 H 0.20 4.18 8.06 -2.91 -0.02 4.15 15
22 H 0.14 3.94 8.06 -2.91 -0.02 3.92 15
23 H 0.13 4.51 8.06 -2.91 -0.02 4.49 15
24 H 0.04 1.73 9.55 73.80 0.70 2.43 15
25 H 0.29 13.61 8.31 -92.71 -0.77 12.84 15
Total: -1.00 -57.86 258.56 4.83 -53.03
By element:
Atomic # 1 Polarization: -1.22 SS G_CDS: 1.97 Total: 0.75 kcal
Atomic # 6 Polarization: -36.50 SS G_CDS: 2.75 Total: -33.74 kcal
Atomic # 7 Polarization: -60.44 SS G_CDS: 0.60 Total: -59.85 kcal
Atomic # 14 Polarization: 40.03 SS G_CDS: 2.03 Total: 42.06 kcal
Atomic # 16 Polarization: 0.27 SS G_CDS: -2.52 Total: -2.25 kcal
Total: -57.86 4.83 -53.03 kcal
The number of atoms in the molecule is 25
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000396209753.mol2 25
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 109.177 kcal
(2) G-P(sol) polarization free energy of solvation -57.857 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.320 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.827 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.030 kcal
(6) G-S(sol) free energy of system = (1) + (5) 56.147 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds