Wall clock time and date at job start Mon Mar 30 2020 07:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.40293 * 120.49207 * 159.54663 * 3 2 1 5 5 S 1.76200 * 119.65342 * 0.02562 * 4 3 2 6 6 C 1.38438 * 120.69010 * 179.97438 * 4 3 2 7 7 C 1.39590 * 122.38485 * 0.02562 * 6 4 3 8 8 S 1.76240 * 130.02614 * 179.97438 * 7 6 4 9 9 C 1.75468 * 91.55378 * 180.02562 * 8 7 6 10 10 C 1.32766 * 110.69670 * 359.97438 * 9 8 7 11 11 C 1.39937 * 120.78112 * 359.97438 * 7 6 4 12 12 C 1.46220 * 120.49597 * 339.26804 * 3 2 1 13 13 C 1.39854 * 120.65431 * 0.02562 * 12 3 2 14 14 H 1.08000 * 119.99922 * 317.22452 * 13 12 3 15 15 C 1.40292 * 120.00128 * 137.22049 * 13 12 3 16 16 N 1.30664 * 119.99723 * 155.78503 * 15 13 12 17 17 Si 1.86800 * 120.00098 * 335.78794 * 15 13 12 18 18 H 1.48499 * 109.47054 * 95.30319 * 17 15 13 19 19 H 1.48491 * 109.47174 * 215.30048 * 17 15 13 20 20 H 1.48497 * 109.47175 * 335.30375 * 17 15 13 21 21 H 1.34498 * 102.99913 * 89.99754 * 5 4 3 22 22 H 1.07997 * 118.80708 * 180.02562 * 6 4 3 23 23 H 1.07995 * 124.64809 * 179.97438 * 9 8 7 24 24 H 1.08006 * 122.08794 * 180.02562 * 10 9 8 25 25 H 0.97006 * 119.99846 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2793 1.1336 -0.4224 5 16 2.4016 2.5653 -0.9558 6 6 4.6637 1.1389 -0.4236 7 6 5.4159 0.0372 -0.0126 8 16 7.1636 -0.1759 0.0672 9 6 6.9843 -1.8116 0.6765 10 6 5.7008 -2.1300 0.7953 11 6 4.7891 -1.1350 0.4246 12 6 3.3105 -1.1774 0.4460 13 6 2.6362 -2.3235 0.8791 14 1 1.7741 -2.2318 1.5231 15 6 3.0797 -3.5923 0.4771 16 7 2.7993 -4.6424 1.2023 17 14 4.0712 -3.7804 -1.0949 18 1 5.5202 -3.7745 -0.7699 19 1 3.7168 -5.0635 -1.7530 20 1 3.7648 -2.6528 -2.0112 21 1 2.2511 3.2688 0.1806 22 1 5.1804 2.0277 -0.7545 23 1 7.8053 -2.4691 0.9211 24 1 5.3804 -3.0964 1.1558 25 1 3.1062 -5.5197 0.9245 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396209938.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:57 Heat of formation + Delta-G solvation = 70.893766 kcal Electronic energy + Delta-G solvation = -14399.646730 eV Core-core repulsion = 11981.791223 eV Total energy + Delta-G solvation = -2417.855507 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.54662 -35.72004 -34.32554 -34.05328 -30.95287 -28.95973 -25.87276 -23.59914 -21.87598 -20.52109 -18.84143 -17.18122 -16.92519 -16.41623 -15.68232 -15.00888 -14.38620 -13.71175 -13.33891 -13.33408 -12.89141 -12.47659 -12.35180 -12.10322 -11.79644 -11.60777 -11.40124 -11.22583 -10.83372 -10.44376 -10.36856 -10.10043 -9.76651 -9.66741 -8.52069 -7.83168 -7.76903 -7.59387 -7.16142 -5.04814 1.05583 1.78695 1.97661 2.25915 2.58329 2.69337 2.85820 2.93399 3.02296 3.29685 3.60930 3.77792 3.79832 4.18179 4.84275 5.04512 5.56689 5.68204 6.00239 6.09196 6.31906 6.36939 6.54735 6.63586 6.90713 7.07761 7.08471 7.27170 7.64915 7.91497 8.06510 8.65737 9.37297 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.016061 B = 0.012000 C = 0.007534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.889932 B = 2332.847527 C = 3715.734355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C 0.300 3.700 3 C -0.144 4.144 4 C 0.022 3.978 5 S -0.151 6.151 6 C -0.177 4.177 7 C -0.061 4.061 8 S 0.043 5.957 9 C -0.252 4.252 10 C -0.074 4.074 11 C -0.153 4.153 12 C 0.156 3.844 13 C -0.398 4.398 14 H 0.110 0.890 15 C 0.088 3.912 16 N -0.752 5.752 17 Si 0.885 3.115 18 H -0.236 1.236 19 H -0.274 1.274 20 H -0.238 1.238 21 H 0.075 0.925 22 H 0.118 0.882 23 H 0.155 0.845 24 H 0.136 0.864 25 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.147 2.819 -2.000 8.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.156 5.156 2 C -0.012 4.012 3 C -0.155 4.155 4 C -0.095 4.095 5 S 0.007 5.993 6 C -0.204 4.204 7 C -0.179 4.179 8 S 0.306 5.694 9 C -0.386 4.386 10 C -0.104 4.104 11 C -0.161 4.161 12 C 0.146 3.854 13 C -0.423 4.423 14 H 0.128 0.872 15 C -0.139 4.139 16 N -0.371 5.371 17 Si 0.706 3.294 18 H -0.159 1.159 19 H -0.200 1.200 20 H -0.160 1.160 21 H 0.040 0.960 22 H 0.136 0.864 23 H 0.173 0.827 24 H 0.154 0.846 25 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.206 4.035 -2.695 8.687 hybrid contribution 0.101 -1.587 1.116 1.942 sum 7.307 2.448 -1.579 7.866 Atomic orbital electron populations 1.81016 1.12200 1.09815 1.12605 1.25114 0.92104 0.91785 0.92154 1.16794 0.83905 0.97673 1.17134 1.20463 0.94191 0.93285 1.01566 1.85734 1.75227 1.21902 1.16454 1.19724 0.90965 0.97793 1.11941 1.22439 0.95150 0.97689 1.02643 1.83681 1.03334 1.12347 1.70082 1.24746 0.99812 0.99461 1.14568 1.19836 0.91732 0.99547 0.99252 1.19178 0.93424 0.93533 1.09956 1.19141 0.87827 0.91125 0.87284 1.19541 1.11705 0.88861 1.22228 0.87217 1.26450 0.93693 0.94928 0.98866 1.69647 1.31573 1.01401 1.34448 0.86710 0.81578 0.80152 0.80935 1.15931 1.20022 1.16004 0.96049 0.86400 0.82748 0.84610 0.88972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -11.24 18.54 41.84 0.78 -10.47 15 2 C 0.30 6.85 13.45 -22.47 -0.30 6.55 15 3 C -0.14 -3.18 5.96 -104.00 -0.62 -3.80 15 4 C 0.02 0.45 6.13 -38.74 -0.24 0.21 15 5 S -0.15 -2.66 24.71 -107.50 -2.66 -5.31 15 6 C -0.18 -3.34 9.67 -39.00 -0.38 -3.72 15 7 C -0.06 -1.19 6.47 -38.44 -0.25 -1.44 15 8 S 0.04 0.71 23.30 -107.50 -2.50 -1.80 15 9 C -0.25 -4.26 11.11 28.86 0.32 -3.94 15 10 C -0.07 -1.44 6.38 -40.81 -0.26 -1.70 15 11 C -0.15 -3.21 4.74 -104.65 -0.50 -3.71 15 12 C 0.16 3.52 4.96 -102.12 -0.51 3.02 15 13 C -0.40 -9.39 8.64 -38.21 -0.33 -9.72 15 14 H 0.11 2.78 7.96 -52.49 -0.42 2.36 15 15 C 0.09 1.96 4.31 -17.28 -0.07 1.89 15 16 N -0.75 -16.84 13.92 55.57 0.77 -16.07 15 17 Si 0.89 17.60 24.45 -169.99 -4.16 13.45 15 18 H -0.24 -4.37 5.63 56.52 0.32 -4.05 15 19 H -0.27 -5.25 7.11 56.52 0.40 -4.85 15 20 H -0.24 -5.05 7.11 56.52 0.40 -4.65 15 21 H 0.08 1.22 9.07 97.61 0.89 2.11 15 22 H 0.12 1.96 8.06 -52.49 -0.42 1.54 15 23 H 0.15 2.15 8.06 -52.49 -0.42 1.73 15 24 H 0.14 2.64 5.77 -52.48 -0.30 2.34 15 25 H 0.30 5.93 8.29 -40.82 -0.34 5.59 15 LS Contribution 253.76 15.07 3.82 3.82 Total: -1.00 -23.65 253.76 -6.97 -30.63 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: 0.10 Total: 2.11 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: -3.13 Total: -16.36 kcal Atomic # 7 Polarization: -28.08 SS G_CDS: 1.55 Total: -26.54 kcal Atomic # 14 Polarization: 17.60 SS G_CDS: -4.16 Total: 13.45 kcal Atomic # 16 Polarization: -1.95 SS G_CDS: -5.16 Total: -7.11 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -23.65 -6.97 -30.63 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396209938.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.521 kcal (2) G-P(sol) polarization free energy of solvation -23.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds