Wall clock time and date at job start Mon Mar 30 2020 07:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.40293 * 120.49207 * 159.54663 * 3 2 1 5 5 S 1.76200 * 119.65342 * 0.02562 * 4 3 2 6 6 C 1.38438 * 120.69010 * 179.97438 * 4 3 2 7 7 C 1.39590 * 122.38485 * 0.02562 * 6 4 3 8 8 S 1.76240 * 130.02614 * 179.97438 * 7 6 4 9 9 C 1.75468 * 91.55378 * 180.02562 * 8 7 6 10 10 C 1.32766 * 110.69670 * 359.97438 * 9 8 7 11 11 C 1.39937 * 120.78112 * 359.97438 * 7 6 4 12 12 C 1.46220 * 120.49597 * 339.26804 * 3 2 1 13 13 C 1.39854 * 120.65431 * 0.02562 * 12 3 2 14 14 H 1.08000 * 119.99922 * 317.22452 * 13 12 3 15 15 C 1.40292 * 120.00128 * 137.22049 * 13 12 3 16 16 N 1.30664 * 119.99723 * 155.78503 * 15 13 12 17 17 Si 1.86800 * 120.00098 * 335.78794 * 15 13 12 18 18 H 1.48499 * 109.47054 * 95.30319 * 17 15 13 19 19 H 1.48491 * 109.47174 * 215.30048 * 17 15 13 20 20 H 1.48497 * 109.47175 * 335.30375 * 17 15 13 21 21 H 1.34498 * 102.99913 * 89.99754 * 5 4 3 22 22 H 1.07997 * 118.80708 * 180.02562 * 6 4 3 23 23 H 1.07995 * 124.64809 * 179.97438 * 9 8 7 24 24 H 1.08006 * 122.08794 * 180.02562 * 10 9 8 25 25 H 0.97006 * 119.99846 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2793 1.1336 -0.4224 5 16 2.4016 2.5653 -0.9558 6 6 4.6637 1.1389 -0.4236 7 6 5.4159 0.0372 -0.0126 8 16 7.1636 -0.1759 0.0672 9 6 6.9843 -1.8116 0.6765 10 6 5.7008 -2.1300 0.7953 11 6 4.7891 -1.1350 0.4246 12 6 3.3105 -1.1774 0.4460 13 6 2.6362 -2.3235 0.8791 14 1 1.7741 -2.2318 1.5231 15 6 3.0797 -3.5923 0.4771 16 7 2.7993 -4.6424 1.2023 17 14 4.0712 -3.7804 -1.0949 18 1 5.5202 -3.7745 -0.7699 19 1 3.7168 -5.0635 -1.7530 20 1 3.7648 -2.6528 -2.0112 21 1 2.2511 3.2688 0.1806 22 1 5.1804 2.0277 -0.7545 23 1 7.8053 -2.4691 0.9211 24 1 5.3804 -3.0964 1.1558 25 1 3.1062 -5.5197 0.9245 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396209938.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:57 Heat of formation + Delta-G solvation = 59.032026 kcal Electronic energy + Delta-G solvation = -14400.161094 eV Core-core repulsion = 11981.791223 eV Total energy + Delta-G solvation = -2418.369870 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.10694 -37.43755 -35.95310 -35.64323 -32.58447 -30.50124 -27.49785 -25.12340 -23.48221 -22.02970 -20.43943 -18.76667 -18.43749 -17.87773 -17.25608 -16.56294 -15.87424 -15.26289 -14.94320 -14.93463 -14.46798 -14.12553 -13.92706 -13.66579 -13.43213 -13.29014 -12.99484 -12.80474 -12.37163 -11.98725 -11.90527 -11.57678 -11.29817 -11.21274 -10.07703 -9.34006 -9.24026 -9.15594 -8.61886 -6.74691 -0.46211 0.15316 0.53333 0.82628 1.14886 1.17812 1.28402 1.37246 1.43990 1.86721 2.00060 2.03501 2.17007 2.46476 3.16401 3.40050 4.14010 4.18387 4.45185 4.58637 4.78832 4.88841 5.01440 5.11493 5.36369 5.48012 5.54191 5.73617 5.87560 6.26271 6.37704 6.88871 7.80634 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.016061 B = 0.012000 C = 0.007534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.889932 B = 2332.847527 C = 3715.734355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C 0.306 3.694 3 C -0.175 4.175 4 C 0.006 3.994 5 S -0.138 6.138 6 C -0.153 4.153 7 C -0.094 4.094 8 S 0.122 5.878 9 C -0.226 4.226 10 C -0.111 4.111 11 C -0.155 4.155 12 C 0.151 3.849 13 C -0.438 4.438 14 H 0.072 0.928 15 C 0.071 3.929 16 N -0.786 5.786 17 Si 0.922 3.078 18 H -0.207 1.207 19 H -0.264 1.264 20 H -0.262 1.262 21 H 0.087 0.913 22 H 0.147 0.853 23 H 0.193 0.807 24 H 0.131 0.869 25 H 0.309 0.691 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.766 3.768 -2.869 12.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.185 5.185 2 C -0.005 4.005 3 C -0.187 4.187 4 C -0.111 4.111 5 S 0.019 5.981 6 C -0.179 4.179 7 C -0.213 4.213 8 S 0.385 5.615 9 C -0.360 4.360 10 C -0.140 4.140 11 C -0.164 4.164 12 C 0.141 3.859 13 C -0.464 4.464 14 H 0.090 0.910 15 C -0.153 4.153 16 N -0.407 5.407 17 Si 0.740 3.260 18 H -0.130 1.130 19 H -0.189 1.189 20 H -0.185 1.185 21 H 0.052 0.948 22 H 0.165 0.835 23 H 0.210 0.790 24 H 0.148 0.852 25 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 10.841 4.992 -3.555 12.454 hybrid contribution -0.789 -1.703 1.414 2.350 sum 10.052 3.288 -2.141 10.791 Atomic orbital electron populations 1.80979 1.12837 1.10749 1.13977 1.25427 0.92493 0.91073 0.91479 1.16994 0.83464 0.99016 1.19194 1.20626 0.94954 0.93719 1.01821 1.85639 1.75288 1.20393 1.16742 1.20130 0.90580 0.98341 1.08882 1.22851 0.97992 0.97379 1.03068 1.83496 0.99230 1.10755 1.67976 1.25366 0.99818 1.00308 1.10477 1.19858 0.92547 0.99666 1.01947 1.19389 0.92806 0.94793 1.09364 1.19309 0.89103 0.90839 0.86614 1.19350 1.11908 0.90492 1.24679 0.91023 1.26866 0.94090 0.94157 1.00201 1.69636 1.33276 1.02090 1.35700 0.86224 0.82347 0.79450 0.77947 1.12970 1.18918 1.18538 0.94829 0.83486 0.79021 0.85165 0.87887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -24.82 18.54 19.00 0.35 -24.47 15 2 C 0.31 14.53 13.45 88.33 1.19 15.72 15 3 C -0.18 -7.90 5.96 -19.46 -0.12 -8.02 15 4 C 0.01 0.24 6.13 22.82 0.14 0.38 15 5 S -0.14 -4.67 24.71 -56.49 -1.40 -6.07 15 6 C -0.15 -5.34 9.67 22.64 0.22 -5.12 15 7 C -0.09 -3.39 6.47 23.01 0.15 -3.24 15 8 S 0.12 3.36 23.30 -56.49 -1.32 2.04 15 9 C -0.23 -6.51 11.11 66.64 0.74 -5.77 15 10 C -0.11 -4.02 6.38 21.51 0.14 -3.88 15 11 C -0.15 -6.30 4.74 -19.88 -0.09 -6.40 15 12 C 0.15 6.97 4.96 -18.24 -0.09 6.88 15 13 C -0.44 -21.89 8.64 23.16 0.20 -21.69 15 14 H 0.07 3.99 7.96 -2.91 -0.02 3.97 15 15 C 0.07 3.28 4.31 85.37 0.37 3.65 15 16 N -0.79 -36.53 13.92 21.89 0.30 -36.23 15 17 Si 0.92 35.79 24.45 68.60 1.68 37.47 15 18 H -0.21 -7.03 5.63 99.48 0.56 -6.47 15 19 H -0.26 -9.66 7.11 99.48 0.71 -8.95 15 20 H -0.26 -11.09 7.11 99.48 0.71 -10.38 15 21 H 0.09 2.69 9.07 73.35 0.67 3.36 15 22 H 0.15 4.23 8.06 -2.91 -0.02 4.21 15 23 H 0.19 4.10 8.06 -2.91 -0.02 4.07 15 24 H 0.13 4.88 5.77 -2.91 -0.02 4.86 15 25 H 0.31 12.55 8.29 -92.70 -0.77 11.78 15 Total: -1.00 -52.53 253.76 4.25 -48.28 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: 1.78 Total: 6.45 kcal Atomic # 6 Polarization: -30.33 SS G_CDS: 2.84 Total: -27.49 kcal Atomic # 7 Polarization: -61.35 SS G_CDS: 0.66 Total: -60.70 kcal Atomic # 14 Polarization: 35.79 SS G_CDS: 1.68 Total: 37.47 kcal Atomic # 16 Polarization: -1.31 SS G_CDS: -2.71 Total: -4.02 kcal Total: -52.53 4.25 -48.28 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396209938.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.317 kcal (2) G-P(sol) polarization free energy of solvation -52.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds