Wall clock time and date at job start Mon Mar 30 2020 07:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.37983 * 120.11934 * 149.56642 * 3 2 1 5 5 C 1.40753 * 120.03209 * 180.02562 * 4 3 2 6 6 C 1.41065 * 119.79665 * 180.02562 * 5 4 3 7 7 H 1.07998 * 119.99871 * 154.49830 * 6 5 4 8 8 C 1.39709 * 120.00201 * 334.49831 * 6 5 4 9 9 N 1.30977 * 120.00074 * 342.19101 * 8 6 5 10 10 Si 1.86805 * 120.00287 * 162.19348 * 8 6 5 11 11 H 1.48503 * 109.46778 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.47422 * 119.99550 * 10 8 6 13 13 H 1.48500 * 109.47275 * 240.00053 * 10 8 6 14 14 C 1.40319 * 120.39684 * 359.97438 * 5 4 3 15 15 C 1.38697 * 121.03510 * 0.05153 * 14 5 4 16 16 S 1.76083 * 130.33735 * 179.97438 * 15 14 5 17 17 C 1.75465 * 91.62544 * 179.86613 * 16 15 14 18 18 C 1.33558 * 110.71627 * 0.30542 * 17 16 15 19 19 S 1.76193 * 122.16558 * 179.89556 * 18 17 16 20 20 C 1.40247 * 115.66256 * 359.62943 * 18 17 16 21 21 H 1.07998 * 119.98008 * 0.03873 * 4 3 2 22 22 H 0.97007 * 119.99803 * 180.02562 * 9 8 6 23 23 H 1.08008 * 119.48246 * 180.02562 * 14 5 4 24 24 H 1.07995 * 124.64348 * 180.18837 * 17 16 15 25 25 H 1.34498 * 103.00539 * 269.71478 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2600 1.0300 -0.6046 5 6 4.6675 1.0285 -0.6040 6 6 5.3699 2.0837 -1.2230 7 1 6.3709 2.3287 -0.9001 8 6 4.7706 2.8117 -2.2539 9 7 3.7308 2.3226 -2.8824 10 14 5.4523 4.4828 -2.7359 11 1 6.6218 4.8060 -1.8797 12 1 5.8747 4.4534 -4.1593 13 1 4.4029 5.5173 -2.5523 14 6 5.3761 -0.0156 0.0097 15 6 4.7115 -1.0656 0.6257 16 16 5.3434 -2.4830 1.4577 17 6 3.7241 -3.0640 1.8030 18 6 2.8069 -2.2296 1.3067 19 16 1.0786 -2.5253 1.4793 20 6 3.3087 -1.0998 0.6445 21 1 2.7212 1.8373 -1.0783 22 1 3.3149 2.8280 -3.5984 23 1 6.4561 -0.0017 0.0018 24 1 3.4998 -3.9729 2.3414 25 1 0.7823 -3.2390 0.3784 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396210007.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:49 Heat of formation + Delta-G solvation = 64.025144 kcal Electronic energy + Delta-G solvation = -14061.732541 eV Core-core repulsion = 11643.579189 eV Total energy + Delta-G solvation = -2418.153353 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.48738 -35.55478 -35.41812 -33.09933 -30.34181 -29.10558 -25.65073 -23.03937 -22.67277 -20.21144 -18.97964 -17.11890 -16.68956 -15.93037 -15.39522 -14.97794 -14.54339 -13.63262 -13.57569 -13.16022 -12.53055 -12.35379 -12.25864 -11.94791 -11.81200 -11.61766 -11.38330 -11.19227 -10.85623 -10.52187 -10.25167 -10.00594 -9.92825 -9.42314 -8.69544 -7.69167 -7.62051 -7.36379 -7.04713 -4.77766 1.15357 1.73753 2.15110 2.35062 2.51267 2.76946 2.86014 2.91534 3.03531 3.44765 3.58657 3.66462 3.78411 4.36835 4.91236 5.14655 5.42933 5.92659 6.23125 6.36538 6.47840 6.56420 6.70121 6.81185 7.18111 7.25040 7.39068 7.56393 7.97560 8.26400 8.32266 8.41886 9.63229 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.024684 B = 0.007114 C = 0.005621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.058084 B = 3934.681911 C = 4980.022978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.280 3.720 3 C 0.005 3.995 4 C -0.062 4.062 5 C 0.122 3.878 6 C -0.419 4.419 7 H 0.095 0.905 8 C 0.069 3.931 9 N -0.771 5.771 10 Si 0.920 3.080 11 H -0.255 1.255 12 H -0.270 1.270 13 H -0.267 1.267 14 C -0.208 4.208 15 C -0.058 4.058 16 S 0.055 5.945 17 C -0.212 4.212 18 C -0.054 4.054 19 S -0.125 6.125 20 C -0.160 4.160 21 H 0.137 0.863 22 H 0.293 0.707 23 H 0.107 0.893 24 H 0.160 0.840 25 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.167 -2.536 2.788 4.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.034 4.034 3 C -0.001 4.001 4 C -0.084 4.084 5 C 0.115 3.885 6 C -0.447 4.447 7 H 0.113 0.887 8 C -0.153 4.153 9 N -0.394 5.394 10 Si 0.742 3.258 11 H -0.178 1.178 12 H -0.195 1.195 13 H -0.191 1.191 14 C -0.235 4.235 15 C -0.175 4.175 16 S 0.317 5.683 17 C -0.349 4.349 18 C -0.178 4.178 19 S 0.030 5.970 20 C -0.169 4.169 21 H 0.155 0.845 22 H 0.104 0.896 23 H 0.125 0.875 24 H 0.178 0.822 25 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 1.742 -3.178 3.239 4.860 hybrid contribution 0.115 0.656 -1.603 1.736 sum 1.857 -2.521 1.636 3.533 Atomic orbital electron populations 1.80998 1.12289 1.09429 1.09985 1.25628 0.92809 0.92348 0.92646 1.16669 0.83181 0.96706 1.03576 1.21545 0.94829 0.96347 0.95681 1.17280 0.90821 0.90744 0.89621 1.19810 1.02039 1.10195 1.12705 0.88709 1.26135 0.94124 1.00033 0.95037 1.69825 1.17034 1.36760 1.15787 0.86039 0.80340 0.80076 0.79298 1.17778 1.19465 1.19135 1.20132 0.98052 0.94783 1.10560 1.22003 0.94851 0.98423 1.02245 1.83722 1.06936 1.19667 1.58000 1.25237 0.94844 1.04744 1.10038 1.19694 0.94373 0.98107 1.05664 1.85769 1.05650 1.72719 1.32828 1.18133 0.91345 0.97371 1.10081 0.84497 0.89617 0.87474 0.82242 0.96744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.93 18.15 41.84 0.76 -9.17 15 2 C 0.28 6.13 12.86 -22.47 -0.29 5.84 15 3 C 0.00 0.11 5.92 -104.30 -0.62 -0.51 15 4 C -0.06 -1.39 8.30 -38.72 -0.32 -1.71 15 5 C 0.12 2.74 5.54 -107.09 -0.59 2.15 15 6 C -0.42 -9.14 8.99 -37.96 -0.34 -9.48 15 7 H 0.09 1.94 7.90 -52.49 -0.41 1.52 15 8 C 0.07 1.43 5.11 -17.37 -0.09 1.34 15 9 N -0.77 -16.91 10.98 55.54 0.61 -16.30 15 10 Si 0.92 15.66 29.59 -169.99 -5.03 10.63 15 11 H -0.25 -4.27 7.11 56.52 0.40 -3.87 15 12 H -0.27 -4.59 7.11 56.52 0.40 -4.19 15 13 H -0.27 -4.54 7.11 56.52 0.40 -4.14 15 14 C -0.21 -4.42 9.72 -38.63 -0.38 -4.80 15 15 C -0.06 -1.21 6.45 -38.63 -0.25 -1.46 15 16 S 0.06 0.94 23.29 -107.50 -2.50 -1.56 15 17 C -0.21 -3.64 10.91 29.09 0.32 -3.32 15 18 C -0.05 -1.05 6.04 -40.47 -0.24 -1.29 15 19 S -0.12 -2.31 23.02 -107.50 -2.48 -4.78 15 20 C -0.16 -3.44 6.03 -104.59 -0.63 -4.07 15 21 H 0.14 3.13 6.17 -52.49 -0.32 2.81 15 22 H 0.29 5.80 8.30 -40.82 -0.34 5.46 15 23 H 0.11 2.11 8.06 -52.48 -0.42 1.69 15 24 H 0.16 2.29 8.06 -52.49 -0.42 1.87 15 25 H 0.07 1.23 9.07 97.61 0.89 2.11 15 LS Contribution 259.81 15.07 3.92 3.92 Total: -1.00 -23.34 259.81 -7.99 -31.33 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: 0.17 Total: 3.26 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: -3.43 Total: -17.32 kcal Atomic # 7 Polarization: -26.84 SS G_CDS: 1.37 Total: -25.47 kcal Atomic # 14 Polarization: 15.66 SS G_CDS: -5.03 Total: 10.63 kcal Atomic # 16 Polarization: -1.36 SS G_CDS: -4.98 Total: -6.34 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -23.34 -7.99 -31.33 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396210007.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.355 kcal (2) G-P(sol) polarization free energy of solvation -23.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds