Wall clock time and date at job start Mon Mar 30 2020 07:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.37983 * 120.11934 * 149.56642 * 3 2 1 5 5 C 1.40753 * 120.03209 * 180.02562 * 4 3 2 6 6 C 1.41065 * 119.79665 * 180.02562 * 5 4 3 7 7 H 1.07998 * 119.99871 * 154.49830 * 6 5 4 8 8 C 1.39709 * 120.00201 * 334.49831 * 6 5 4 9 9 N 1.30977 * 120.00074 * 342.19101 * 8 6 5 10 10 Si 1.86805 * 120.00287 * 162.19348 * 8 6 5 11 11 H 1.48503 * 109.46778 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.47422 * 119.99550 * 10 8 6 13 13 H 1.48500 * 109.47275 * 240.00053 * 10 8 6 14 14 C 1.40319 * 120.39684 * 359.97438 * 5 4 3 15 15 C 1.38697 * 121.03510 * 0.05153 * 14 5 4 16 16 S 1.76083 * 130.33735 * 179.97438 * 15 14 5 17 17 C 1.75465 * 91.62544 * 179.86613 * 16 15 14 18 18 C 1.33558 * 110.71627 * 0.30542 * 17 16 15 19 19 S 1.76193 * 122.16558 * 179.89556 * 18 17 16 20 20 C 1.40247 * 115.66256 * 359.62943 * 18 17 16 21 21 H 1.07998 * 119.98008 * 0.03873 * 4 3 2 22 22 H 0.97007 * 119.99803 * 180.02562 * 9 8 6 23 23 H 1.08008 * 119.48246 * 180.02562 * 14 5 4 24 24 H 1.07995 * 124.64348 * 180.18837 * 17 16 15 25 25 H 1.34498 * 103.00539 * 269.71478 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2600 1.0300 -0.6046 5 6 4.6675 1.0285 -0.6040 6 6 5.3699 2.0837 -1.2230 7 1 6.3709 2.3287 -0.9001 8 6 4.7706 2.8117 -2.2539 9 7 3.7308 2.3226 -2.8824 10 14 5.4523 4.4828 -2.7359 11 1 6.6218 4.8060 -1.8797 12 1 5.8747 4.4534 -4.1593 13 1 4.4029 5.5173 -2.5523 14 6 5.3761 -0.0156 0.0097 15 6 4.7115 -1.0656 0.6257 16 16 5.3434 -2.4830 1.4577 17 6 3.7241 -3.0640 1.8030 18 6 2.8069 -2.2296 1.3067 19 16 1.0786 -2.5253 1.4793 20 6 3.3087 -1.0998 0.6445 21 1 2.7212 1.8373 -1.0783 22 1 3.3149 2.8280 -3.5984 23 1 6.4561 -0.0017 0.0018 24 1 3.4998 -3.9729 2.3414 25 1 0.7823 -3.2390 0.3784 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396210007.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:48 Heat of formation + Delta-G solvation = 54.395189 kcal Electronic energy + Delta-G solvation = -14062.150128 eV Core-core repulsion = 11643.579189 eV Total energy + Delta-G solvation = -2418.570939 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.10054 -37.28538 -36.97850 -34.67172 -32.00859 -30.68744 -27.24353 -24.61895 -24.30155 -21.77871 -20.57241 -18.62730 -18.28753 -17.43718 -16.95011 -16.49675 -16.12840 -15.18985 -15.11836 -14.77844 -14.00143 -13.98790 -13.96378 -13.63269 -13.31242 -13.19950 -12.80928 -12.70426 -12.32818 -12.05094 -11.76405 -11.49663 -11.49395 -10.98446 -10.27391 -9.29019 -9.07807 -8.90218 -8.57191 -6.41556 -0.38698 0.27224 0.50286 0.82884 0.98661 1.36846 1.45935 1.55503 1.60838 1.85825 2.03562 2.13684 2.18971 2.72095 3.20024 3.48015 3.95796 4.38933 4.63710 4.82298 4.86418 4.99492 5.09957 5.19677 5.55972 5.58580 5.77057 5.91049 6.34178 6.64006 6.67969 6.71302 8.11735 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.024684 B = 0.007114 C = 0.005621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.058084 B = 3934.681911 C = 4980.022978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C 0.285 3.715 3 C -0.010 4.010 4 C -0.071 4.071 5 C 0.098 3.902 6 C -0.448 4.448 7 H 0.101 0.899 8 C 0.037 3.963 9 N -0.808 5.808 10 Si 0.986 3.014 11 H -0.249 1.249 12 H -0.267 1.267 13 H -0.267 1.267 14 C -0.211 4.211 15 C -0.089 4.089 16 S 0.121 5.879 17 C -0.181 4.181 18 C -0.090 4.090 19 S -0.120 6.120 20 C -0.166 4.166 21 H 0.125 0.875 22 H 0.298 0.702 23 H 0.118 0.882 24 H 0.196 0.804 25 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.195 -3.606 3.708 6.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C -0.029 4.029 3 C -0.016 4.016 4 C -0.094 4.094 5 C 0.092 3.908 6 C -0.476 4.476 7 H 0.119 0.881 8 C -0.182 4.182 9 N -0.432 5.432 10 Si 0.806 3.194 11 H -0.172 1.172 12 H -0.192 1.192 13 H -0.192 1.192 14 C -0.238 4.238 15 C -0.205 4.205 16 S 0.384 5.616 17 C -0.318 4.318 18 C -0.215 4.215 19 S 0.035 5.965 20 C -0.176 4.176 21 H 0.143 0.857 22 H 0.109 0.891 23 H 0.136 0.864 24 H 0.213 0.787 25 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 2.781 -4.256 4.165 6.572 hybrid contribution -0.188 0.752 -1.751 1.915 sum 2.593 -3.504 2.414 4.983 Atomic orbital electron populations 1.80980 1.12348 1.09797 1.10387 1.25660 0.92811 0.92078 0.92384 1.16799 0.83234 0.97311 1.04244 1.21471 0.95164 0.96435 0.96321 1.17540 0.90961 0.91745 0.90549 1.20029 1.02660 1.11188 1.13705 0.88089 1.26877 0.94066 1.02754 0.94479 1.69866 1.18451 1.38208 1.16669 0.85057 0.79634 0.75779 0.78895 1.17196 1.19182 1.19152 1.20290 0.98593 0.94666 1.10234 1.22334 0.95099 1.00078 1.03025 1.83538 1.05614 1.16550 1.55917 1.25838 0.94732 1.04528 1.06722 1.19774 0.95398 0.98597 1.07723 1.85725 1.05388 1.72772 1.32615 1.18428 0.91907 0.97571 1.09670 0.85701 0.89110 0.86389 0.78683 0.96632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -20.27 18.15 19.00 0.34 -19.93 15 2 C 0.28 12.60 12.86 88.33 1.14 13.74 15 3 C -0.01 -0.44 5.92 -19.66 -0.12 -0.55 15 4 C -0.07 -3.33 8.30 22.82 0.19 -3.14 15 5 C 0.10 4.52 5.54 -21.46 -0.12 4.40 15 6 C -0.45 -19.91 8.99 23.32 0.21 -19.70 15 7 H 0.10 4.18 7.90 -2.91 -0.02 4.16 15 8 C 0.04 1.55 5.11 85.18 0.44 1.98 15 9 N -0.81 -36.51 10.98 21.79 0.24 -36.27 15 10 Si 0.99 32.17 29.59 68.60 2.03 34.20 15 11 H -0.25 -7.80 7.11 99.48 0.71 -7.09 15 12 H -0.27 -8.52 7.11 99.48 0.71 -7.81 15 13 H -0.27 -8.62 7.11 99.48 0.71 -7.91 15 14 C -0.21 -8.94 9.72 22.89 0.22 -8.72 15 15 C -0.09 -3.56 6.45 22.89 0.15 -3.41 15 16 S 0.12 3.74 23.29 -56.49 -1.32 2.42 15 17 C -0.18 -5.53 10.91 66.76 0.73 -4.81 15 18 C -0.09 -3.34 6.04 21.70 0.13 -3.21 15 19 S -0.12 -4.25 23.02 -56.49 -1.30 -5.55 15 20 C -0.17 -7.01 6.03 -19.85 -0.12 -7.13 15 21 H 0.13 6.02 6.17 -2.91 -0.02 6.00 15 22 H 0.30 12.16 8.30 -92.70 -0.77 11.39 15 23 H 0.12 4.58 8.06 -2.91 -0.02 4.56 15 24 H 0.20 4.56 8.06 -2.91 -0.02 4.54 15 25 H 0.07 2.39 9.07 73.35 0.67 3.06 15 Total: -1.00 -49.56 259.81 4.77 -44.78 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 1.93 Total: 10.90 kcal Atomic # 6 Polarization: -33.40 SS G_CDS: 2.84 Total: -30.55 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: 0.58 Total: -56.20 kcal Atomic # 14 Polarization: 32.17 SS G_CDS: 2.03 Total: 34.20 kcal Atomic # 16 Polarization: -0.51 SS G_CDS: -2.62 Total: -3.13 kcal Total: -49.56 4.77 -44.78 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396210007.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.180 kcal (2) G-P(sol) polarization free energy of solvation -49.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds