Wall clock time and date at job start Mon Mar 30 2020 07:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39462 * 119.99321 * 219.94038 * 3 2 1 5 5 C 1.39024 * 120.54842 * 179.97438 * 4 3 2 6 6 S 1.76056 * 130.01593 * 179.97438 * 5 4 3 7 7 C 1.75452 * 91.73990 * 180.02562 * 6 5 4 8 8 C 1.39711 * 124.85971 * 179.97438 * 7 6 5 9 9 H 1.08007 * 120.00112 * 180.02562 * 8 7 6 10 10 C 1.40191 * 119.99932 * 0.02777 * 8 7 6 11 11 N 1.30754 * 120.00388 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99755 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47376 * 0.02562 * 12 10 8 14 14 H 1.48505 * 109.46865 * 119.99962 * 12 10 8 15 15 H 1.48498 * 109.47289 * 239.99898 * 12 10 8 16 16 C 1.37275 * 110.27695 * 0.02562 * 7 6 5 17 17 C 1.39188 * 115.11210 * 359.74879 * 16 7 6 18 18 C 1.42909 * 128.26520 * 179.62123 * 17 16 7 19 19 S 1.76207 * 119.81517 * 0.64112 * 18 17 16 20 20 C 1.37574 * 120.36530 * 180.36555 * 18 17 16 21 21 H 1.07999 * 119.72795 * 0.02562 * 4 3 2 22 22 H 0.96994 * 120.00430 * 180.02562 * 11 10 8 23 23 H 1.07999 * 122.44324 * 180.02562 * 16 7 6 24 24 H 1.34505 * 102.99714 * 269.72320 * 19 18 17 25 25 H 1.08001 * 119.88435 * 180.23828 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2647 0.9270 0.7754 5 6 4.6549 0.9376 0.7845 6 16 5.7733 1.9806 1.6568 7 6 7.1615 1.1579 0.9680 8 6 8.4944 1.4796 1.2360 9 1 9.2900 0.9197 0.7668 10 6 8.7993 2.5291 2.1141 11 7 7.8363 3.2073 2.6818 12 14 10.5815 2.9587 2.4730 13 1 11.4733 2.0486 1.7104 14 1 10.8436 4.3628 2.0667 15 1 10.8443 2.8067 3.9266 16 6 6.7505 0.1537 0.1272 17 6 5.3711 0.0074 0.0118 18 6 4.6441 -0.9321 -0.7826 19 16 5.5146 -2.1072 -1.7656 20 6 3.2684 -0.9278 -0.7798 21 1 2.7199 1.6416 1.3745 22 1 8.0472 3.9336 3.2890 23 1 7.4466 -0.4797 -0.4026 24 1 5.6646 -1.4678 -2.9394 25 1 2.7268 -1.6438 -1.3801 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396210103.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:20 Heat of formation + Delta-G solvation = 32.310032 kcal Electronic energy + Delta-G solvation = -13728.751507 eV Core-core repulsion = 11309.222884 eV Total energy + Delta-G solvation = -2419.528623 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.07755 -37.67606 -36.72683 -34.94848 -31.81121 -31.16822 -27.82574 -24.66877 -23.74617 -21.42089 -20.54498 -19.55634 -17.91523 -17.33836 -16.94471 -16.40198 -15.86797 -15.22586 -14.87037 -14.68923 -14.56363 -14.04367 -13.84258 -13.62345 -13.26690 -13.21097 -13.08659 -12.58328 -12.24175 -11.96126 -11.93180 -11.53778 -11.11527 -11.01394 -10.24413 -9.34061 -9.08390 -8.88794 -8.35186 -6.68375 -0.24160 0.30966 0.96973 1.11549 1.28358 1.38520 1.59108 1.63335 1.74379 1.83842 2.02223 2.11516 2.27149 2.82827 3.15227 3.18126 4.10354 4.21064 4.58951 4.77790 4.89117 4.95376 5.11461 5.38654 5.43967 5.53653 5.77215 5.91871 6.02994 6.29192 6.40036 6.61653 7.78324 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.026954 B = 0.006220 C = 0.005068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.547697 B = 4500.478520 C = 5523.568669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.300 3.700 3 C -0.142 4.142 4 C 0.033 3.967 5 C -0.296 4.296 6 S 0.139 5.861 7 C 0.029 3.971 8 C -0.364 4.364 9 H 0.115 0.885 10 C 0.016 3.984 11 N -0.772 5.772 12 Si 1.013 2.987 13 H -0.250 1.250 14 H -0.259 1.259 15 H -0.258 1.258 16 C -0.371 4.371 17 C 0.060 3.940 18 C -0.177 4.177 19 S -0.125 6.125 20 C 0.014 3.986 21 H 0.134 0.866 22 H 0.320 0.680 23 H 0.119 0.881 24 H 0.062 0.938 25 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.623 0.190 -0.374 3.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.166 5.166 2 C -0.012 4.012 3 C -0.151 4.151 4 C 0.008 3.992 5 C -0.412 4.412 6 S 0.398 5.602 7 C -0.092 4.092 8 C -0.397 4.397 9 H 0.133 0.867 10 C -0.206 4.206 11 N -0.397 5.397 12 Si 0.831 3.169 13 H -0.172 1.172 14 H -0.183 1.183 15 H -0.182 1.182 16 C -0.394 4.394 17 C 0.050 3.950 18 C -0.291 4.291 19 S 0.032 5.968 20 C -0.011 4.011 21 H 0.151 0.849 22 H 0.134 0.866 23 H 0.137 0.863 24 H 0.026 0.974 25 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.081 0.770 0.404 2.256 hybrid contribution 0.701 0.274 -1.138 1.364 sum 2.782 1.044 -0.734 3.060 Atomic orbital electron populations 1.81172 1.12665 1.10934 1.11797 1.25558 0.92184 0.91807 0.91656 1.15244 0.83360 1.05643 1.10818 1.20438 0.90996 0.94440 0.93313 1.23615 0.98212 1.08065 1.11303 1.84765 0.92875 1.34500 1.48071 1.21969 0.97638 0.94829 0.94715 1.20022 0.92193 1.10251 1.17235 0.86704 1.27397 1.06438 0.93796 0.92998 1.68609 1.36944 1.15095 1.19051 0.84612 0.73170 0.79505 0.79618 1.17246 1.18283 1.18200 1.19856 0.93486 1.09806 1.16283 1.18327 0.93175 0.91528 0.92003 1.20728 0.94560 1.05154 1.08690 1.85333 1.76965 1.22432 1.12060 1.21130 0.91893 0.94182 0.93860 0.84863 0.86563 0.86333 0.97367 0.83469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -17.79 18.54 19.00 0.35 -17.44 15 2 C 0.30 10.27 15.32 88.33 1.35 11.63 15 3 C -0.14 -4.95 5.74 -21.31 -0.12 -5.07 15 4 C 0.03 1.22 9.75 22.75 0.22 1.44 15 5 C -0.30 -12.55 6.44 23.02 0.15 -12.40 15 6 S 0.14 6.05 20.13 -56.49 -1.14 4.91 15 7 C 0.03 1.34 6.12 22.40 0.14 1.48 15 8 C -0.36 -15.66 9.26 23.10 0.21 -15.44 15 9 H 0.12 4.62 7.85 -2.91 -0.02 4.59 15 10 C 0.02 0.63 5.50 85.33 0.47 1.10 15 11 N -0.77 -30.87 10.58 21.87 0.23 -30.64 15 12 Si 1.01 28.45 29.56 68.60 2.03 30.48 15 13 H -0.25 -6.88 7.11 99.48 0.71 -6.17 15 14 H -0.26 -7.01 7.11 99.48 0.71 -6.30 15 15 H -0.26 -6.98 7.11 99.48 0.71 -6.28 15 16 C -0.37 -17.04 9.67 22.27 0.22 -16.82 15 17 C 0.06 2.64 5.85 -21.32 -0.12 2.52 15 18 C -0.18 -6.86 6.19 23.28 0.14 -6.71 15 19 S -0.13 -4.29 25.10 -56.49 -1.42 -5.70 15 20 C 0.01 0.49 9.42 22.55 0.21 0.70 15 21 H 0.13 4.31 8.06 -2.91 -0.02 4.29 15 22 H 0.32 11.07 8.29 -92.71 -0.77 10.30 15 23 H 0.12 5.36 7.74 -2.91 -0.02 5.33 15 24 H 0.06 2.01 9.07 73.35 0.67 2.67 15 25 H 0.15 4.26 8.06 -2.91 -0.02 4.23 15 Total: -1.00 -48.14 263.55 4.85 -43.29 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 1.93 Total: 12.67 kcal Atomic # 6 Polarization: -40.45 SS G_CDS: 2.87 Total: -37.58 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: 0.58 Total: -48.08 kcal Atomic # 14 Polarization: 28.45 SS G_CDS: 2.03 Total: 30.48 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -2.55 Total: -0.79 kcal Total: -48.14 4.85 -43.29 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396210103.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.600 kcal (2) G-P(sol) polarization free energy of solvation -48.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds