Wall clock time and date at job start Mon Mar 30 2020 07:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.40476 * 120.59106 * 64.02651 * 3 2 1 5 5 S 1.76205 * 119.81498 * 0.02719 * 4 3 2 6 6 C 1.38040 * 120.36270 * 179.97438 * 4 3 2 7 7 C 1.41392 * 121.80066 * 0.04819 * 6 4 3 8 8 C 1.45510 * 128.51875 * 179.97438 * 7 6 4 9 9 C 1.31910 * 114.96676 * 179.97438 * 8 7 6 10 10 S 1.75277 * 111.33731 * 0.02562 * 9 8 7 11 11 C 1.39545 * 119.77053 * 359.95620 * 7 6 4 12 12 C 1.42220 * 120.01913 * 0.02562 * 11 7 6 13 13 C 1.40225 * 120.38254 * 180.02562 * 12 11 7 14 14 H 1.07997 * 119.99788 * 218.81753 * 13 12 11 15 15 C 1.40255 * 119.99871 * 38.82817 * 13 12 11 16 16 N 1.30676 * 120.00148 * 20.95383 * 15 13 12 17 17 Si 1.86803 * 119.99605 * 200.96059 * 15 13 12 18 18 H 1.48502 * 109.47305 * 59.99676 * 17 15 13 19 19 H 1.48504 * 109.46667 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46907 * 299.99540 * 17 15 13 21 21 H 1.34503 * 102.99958 * 89.99801 * 5 4 3 22 22 H 1.08001 * 119.09775 * 180.02562 * 6 4 3 23 23 H 1.08001 * 122.51745 * 359.97438 * 8 7 6 24 24 H 1.08005 * 124.32783 * 180.02562 * 9 8 7 25 25 H 0.96998 * 119.99901 * 181.97575 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2831 -0.5286 -1.0871 5 16 2.4133 -1.1994 -2.4649 6 6 4.6635 -0.5251 -1.0824 7 6 5.4036 0.0024 0.0008 8 6 6.8480 0.0800 0.1590 9 6 7.2558 0.6296 1.2867 10 16 5.9003 1.1153 2.2862 11 6 4.7341 0.5383 1.1016 12 6 3.3123 0.5523 1.1321 13 6 2.6318 1.0894 2.2342 14 1 1.7329 0.6139 2.5979 15 6 3.1185 2.2442 2.8641 16 7 3.9270 3.0464 2.2236 17 14 2.6108 2.6353 4.6188 18 1 3.0371 1.5309 5.5153 19 1 3.2574 3.9005 5.0507 20 1 1.1349 2.7853 4.6853 21 1 2.2639 -0.1362 -3.2751 22 1 5.1927 -0.9369 -1.9291 23 1 7.5346 -0.2849 -0.5906 24 1 8.2923 0.7633 1.5591 25 1 4.2863 3.8298 2.6687 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396210117.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:48 Heat of formation + Delta-G solvation = 60.876303 kcal Electronic energy + Delta-G solvation = -14299.580349 eV Core-core repulsion = 11881.290453 eV Total energy + Delta-G solvation = -2418.289897 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.20615 -35.62858 -34.64210 -33.41281 -30.37845 -28.68420 -25.99968 -23.30784 -21.88044 -20.18428 -18.54968 -17.37644 -16.82841 -15.77694 -15.51572 -14.84664 -14.43295 -13.41016 -13.19089 -12.97969 -12.90858 -12.20092 -12.00769 -11.98105 -11.75937 -11.50479 -11.31130 -11.10422 -10.83542 -10.62880 -10.23325 -10.01059 -9.55171 -9.28585 -8.57798 -7.64907 -7.59715 -7.42821 -6.59472 -4.95920 1.37310 1.85666 2.34949 2.57104 2.73985 2.86842 2.89872 3.04489 3.12060 3.37374 3.63321 3.94226 4.02518 4.30087 5.03757 5.24059 5.43353 5.86937 6.01295 6.26061 6.50742 6.59581 6.65302 6.78314 6.98228 7.11219 7.31508 7.44065 7.88493 8.09284 8.25594 8.77246 9.59975 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.017769 B = 0.010608 C = 0.006888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.391088 B = 2638.890449 C = 4064.301997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.305 3.695 3 C -0.139 4.139 4 C -0.008 4.008 5 S -0.158 6.158 6 C -0.157 4.157 7 C -0.037 4.037 8 C -0.131 4.131 9 C -0.228 4.228 10 S 0.127 5.873 11 C -0.153 4.153 12 C 0.191 3.809 13 C -0.441 4.441 14 H 0.096 0.904 15 C 0.071 3.929 16 N -0.742 5.742 17 Si 0.907 3.093 18 H -0.254 1.254 19 H -0.270 1.270 20 H -0.258 1.258 21 H 0.071 0.929 22 H 0.115 0.885 23 H 0.128 0.872 24 H 0.150 0.850 25 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.095 -1.122 0.414 7.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.166 5.166 2 C -0.006 4.006 3 C -0.151 4.151 4 C -0.124 4.124 5 S 0.001 5.999 6 C -0.181 4.181 7 C -0.048 4.048 8 C -0.163 4.163 9 C -0.362 4.362 10 S 0.394 5.606 11 C -0.270 4.270 12 C 0.181 3.819 13 C -0.468 4.468 14 H 0.114 0.886 15 C -0.154 4.154 16 N -0.364 5.364 17 Si 0.729 3.271 18 H -0.178 1.178 19 H -0.194 1.194 20 H -0.183 1.183 21 H 0.035 0.965 22 H 0.133 0.867 23 H 0.146 0.854 24 H 0.168 0.832 25 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.964 -0.721 1.221 5.162 hybrid contribution 0.980 0.968 -0.544 1.482 sum 5.944 0.247 0.677 5.988 Atomic orbital electron populations 1.80987 1.12313 1.13083 1.10245 1.25170 0.92169 0.91575 0.91667 1.16888 0.83737 1.17881 0.96602 1.20359 0.94553 1.03163 0.94353 1.85629 1.76044 1.18046 1.20214 1.20356 0.91074 1.07877 0.98774 1.19079 0.91618 0.99699 0.94398 1.20831 0.93675 1.03398 0.98373 1.25342 1.03486 1.06668 1.00744 1.83854 0.92824 1.62561 1.21368 1.22650 0.96855 1.08811 0.98673 1.17564 0.87726 0.87239 0.89377 1.19563 1.10205 1.07497 1.09535 0.88579 1.26039 0.93763 0.95151 1.00419 1.69690 1.20199 1.08935 1.37552 0.86283 0.80672 0.79222 0.80887 1.17751 1.19444 1.18259 0.96471 0.86662 0.85420 0.83199 0.89032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -11.81 18.54 41.84 0.78 -11.03 15 2 C 0.31 7.25 13.41 -22.47 -0.30 6.95 15 3 C -0.14 -3.22 5.97 -103.89 -0.62 -3.84 15 4 C -0.01 -0.18 6.12 -38.81 -0.24 -0.41 15 5 S -0.16 -2.93 24.74 -107.50 -2.66 -5.59 15 6 C -0.16 -3.10 9.74 -38.45 -0.37 -3.47 15 7 C -0.04 -0.75 6.02 -105.31 -0.63 -1.38 15 8 C -0.13 -2.26 10.38 -38.59 -0.40 -2.66 15 9 C -0.23 -3.79 11.03 28.83 0.32 -3.48 15 10 S 0.13 2.48 19.84 -107.50 -2.13 0.35 15 11 C -0.15 -3.41 5.75 -37.57 -0.22 -3.62 15 12 C 0.19 4.56 5.53 -104.39 -0.58 3.98 15 13 C -0.44 -10.48 8.22 -38.08 -0.31 -10.79 15 14 H 0.10 2.29 7.73 -52.49 -0.41 1.89 15 15 C 0.07 1.57 4.26 -17.29 -0.07 1.50 15 16 N -0.74 -16.55 10.68 55.56 0.59 -15.96 15 17 Si 0.91 16.80 29.61 -169.99 -5.03 11.77 15 18 H -0.25 -4.63 7.11 56.52 0.40 -4.23 15 19 H -0.27 -4.77 7.11 56.52 0.40 -4.37 15 20 H -0.26 -4.89 7.11 56.52 0.40 -4.48 15 21 H 0.07 1.25 9.07 97.61 0.89 2.14 15 22 H 0.12 1.99 8.06 -52.49 -0.42 1.56 15 23 H 0.13 1.83 8.06 -52.49 -0.42 1.40 15 24 H 0.15 1.99 8.06 -52.48 -0.42 1.56 15 25 H 0.30 6.01 8.29 -40.82 -0.34 5.67 15 LS Contribution 260.43 15.07 3.92 3.92 Total: -1.00 -24.75 260.43 -7.89 -32.63 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: 0.08 Total: 1.14 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: -3.43 Total: -17.24 kcal Atomic # 7 Polarization: -28.36 SS G_CDS: 1.37 Total: -26.99 kcal Atomic # 14 Polarization: 16.80 SS G_CDS: -5.03 Total: 11.77 kcal Atomic # 16 Polarization: -0.44 SS G_CDS: -4.79 Total: -5.24 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -24.75 -7.89 -32.63 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396210117.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.508 kcal (2) G-P(sol) polarization free energy of solvation -24.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds