Wall clock time and date at job start Mon Mar 30 2020 07:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39230 * 120.12439 * 306.16288 * 3 2 1 5 5 C 1.39319 * 120.38995 * 179.97438 * 4 3 2 6 6 S 1.75842 * 129.94186 * 180.31306 * 5 4 3 7 7 C 1.69959 * 93.24816 * 180.02562 * 6 5 4 8 8 C 1.36503 * 112.00275 * 359.64731 * 7 6 5 9 9 C 1.40830 * 123.27519 * 180.24582 * 8 7 6 10 10 H 1.08000 * 119.99705 * 159.15106 * 9 8 7 11 11 C 1.39694 * 120.00395 * 339.15310 * 9 8 7 12 12 N 1.31090 * 120.00100 * 344.90936 * 11 9 8 13 13 Si 1.86802 * 120.00260 * 164.90527 * 11 9 8 14 14 H 1.48493 * 109.47159 * 90.00155 * 13 11 9 15 15 H 1.48502 * 109.47214 * 210.00436 * 13 11 9 16 16 H 1.48502 * 109.46901 * 330.00041 * 13 11 9 17 17 C 1.39691 * 119.90983 * 359.97438 * 5 4 3 18 18 C 1.40544 * 119.60528 * 0.02562 * 17 5 4 19 19 C 1.38034 * 120.46783 * 359.97438 * 18 17 5 20 20 S 1.76192 * 120.06189 * 180.02562 * 19 18 17 21 21 H 1.07997 * 119.80502 * 359.97438 * 4 3 2 22 22 H 1.07996 * 123.99459 * 179.91817 * 7 6 5 23 23 H 0.96994 * 120.00022 * 179.97438 * 12 11 9 24 24 H 1.08001 * 119.76642 * 179.97438 * 18 17 5 25 25 H 1.34496 * 103.00308 * 89.99760 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2671 -0.7097 0.9722 5 6 4.6603 -0.7133 0.9771 6 16 5.7833 -1.5174 2.0654 7 6 7.1505 -0.9168 1.2538 8 6 6.8101 -0.1373 0.1863 9 6 7.7577 0.4770 -0.6553 10 1 7.4742 0.7905 -1.6491 11 6 9.0641 0.6807 -0.2046 12 7 9.3397 0.5814 1.0732 13 14 10.4185 1.0946 -1.4227 14 1 10.5082 2.5683 -1.5813 15 1 11.7139 0.5712 -0.9193 16 1 10.1103 0.4732 -2.7357 17 6 5.3621 -0.0012 0.0015 18 6 4.6544 0.7151 -0.9789 19 6 3.2741 0.7184 -0.9835 20 16 2.3977 1.6196 -2.2181 21 1 2.7262 -1.2611 1.7271 22 1 8.1681 -1.1305 1.5456 23 1 10.2469 0.7225 1.3860 24 1 5.1944 1.2668 -1.7342 25 1 2.2472 0.7158 -3.2027 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396210139.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:15 Heat of formation + Delta-G solvation = 50.858246 kcal Electronic energy + Delta-G solvation = -13861.230639 eV Core-core repulsion = 11442.506326 eV Total energy + Delta-G solvation = -2418.724312 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.49057 -37.87484 -36.53979 -34.19796 -32.19699 -30.50110 -28.02622 -25.06207 -23.92020 -21.86063 -20.40177 -18.89782 -18.25780 -17.85084 -16.65251 -16.58460 -16.12709 -15.24264 -14.99286 -14.76554 -14.57598 -14.12294 -13.90565 -13.55601 -13.41836 -13.18869 -12.75574 -12.68636 -12.43766 -11.99630 -11.85393 -11.50322 -11.22818 -10.98519 -10.37016 -9.29032 -9.22424 -8.67869 -8.52482 -6.26801 -0.55538 -0.03138 0.55817 0.96745 1.23479 1.43473 1.52798 1.57037 1.64284 1.80984 1.86391 2.15867 2.25401 2.73022 2.84482 3.33629 3.76085 4.10129 4.32479 4.42366 4.75466 4.90589 5.04434 5.15220 5.25732 5.52075 5.72762 5.96217 6.41110 6.46709 6.81700 6.93195 8.38580 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.023845 B = 0.006705 C = 0.005300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.973115 B = 4175.207397 C = 5281.296196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C 0.287 3.713 3 C 0.002 3.998 4 C -0.027 4.027 5 C -0.145 4.145 6 S 0.119 5.881 7 C -0.383 4.383 8 C 0.057 3.943 9 C -0.464 4.464 10 H 0.084 0.916 11 C 0.031 3.969 12 N -0.825 5.825 13 Si 0.979 3.021 14 H -0.264 1.264 15 H -0.273 1.273 16 H -0.258 1.258 17 C -0.070 4.070 18 C -0.018 4.018 19 C -0.092 4.092 20 S -0.121 6.121 21 H 0.163 0.837 22 H 0.141 0.859 23 H 0.285 0.715 24 H 0.145 0.855 25 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.893 -1.039 -2.450 5.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.114 5.114 2 C -0.029 4.029 3 C -0.008 4.008 4 C -0.054 4.054 5 C -0.261 4.261 6 S 0.386 5.614 7 C -0.520 4.520 8 C 0.049 3.951 9 C -0.496 4.496 10 H 0.102 0.898 11 C -0.183 4.183 12 N -0.452 5.452 13 Si 0.800 3.200 14 H -0.188 1.188 15 H -0.198 1.198 16 H -0.181 1.181 17 C -0.084 4.084 18 C -0.040 4.040 19 C -0.211 4.211 20 S 0.036 5.964 21 H 0.181 0.819 22 H 0.158 0.842 23 H 0.095 0.905 24 H 0.163 0.837 25 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -6.940 -1.311 -1.502 7.220 hybrid contribution 2.231 -0.102 -1.475 2.676 sum -4.709 -1.413 -2.977 5.748 Atomic orbital electron populations 1.81178 1.12142 1.09347 1.08746 1.25195 0.91998 0.92798 0.92886 1.15839 0.83926 1.02303 0.98685 1.20596 0.90292 0.97158 0.97337 1.22889 0.97497 1.04469 1.01282 1.81635 0.94309 1.53149 1.32357 1.24416 1.01149 1.16254 1.10149 1.17692 0.89053 0.93694 0.94693 1.19305 0.94637 1.34858 1.00829 0.89803 1.26613 1.01730 0.93033 0.96942 1.69930 1.22291 1.37132 1.15832 0.85227 0.76609 0.79244 0.78871 1.18847 1.19820 1.18128 1.19920 0.94028 0.98488 0.95998 1.21287 0.91572 0.94691 0.96463 1.20717 0.94664 1.05513 1.00218 1.85891 1.73482 1.20612 1.16386 0.81940 0.84202 0.90489 0.83705 0.94940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -13.77 18.54 19.00 0.35 -13.42 15 2 C 0.29 8.41 14.26 88.33 1.26 9.67 15 3 C 0.00 0.06 5.75 -21.18 -0.12 -0.06 15 4 C -0.03 -0.79 9.76 22.77 0.22 -0.57 15 5 C -0.14 -5.31 6.42 22.88 0.15 -5.16 15 6 S 0.12 4.51 22.96 -56.49 -1.30 3.21 15 7 C -0.38 -18.31 9.51 67.41 0.64 -17.67 15 8 C 0.06 2.77 5.69 -20.87 -0.12 2.65 15 9 C -0.46 -22.67 9.04 23.26 0.21 -22.46 15 10 H 0.08 3.84 7.62 -2.91 -0.02 3.81 15 11 C 0.03 1.47 5.31 85.16 0.45 1.92 15 12 N -0.83 -41.05 10.90 21.79 0.24 -40.81 15 13 Si 0.98 36.16 29.59 68.60 2.03 38.19 15 14 H -0.26 -9.44 7.11 99.48 0.71 -8.73 15 15 H -0.27 -9.85 7.11 99.48 0.71 -9.14 15 16 H -0.26 -9.26 7.11 99.48 0.71 -8.55 15 17 C -0.07 -2.89 6.03 -20.18 -0.12 -3.01 15 18 C -0.02 -0.64 9.57 22.78 0.22 -0.42 15 19 C -0.09 -2.88 6.13 22.83 0.14 -2.74 15 20 S -0.12 -3.33 24.75 -56.49 -1.40 -4.73 15 21 H 0.16 3.76 8.06 -2.91 -0.02 3.73 15 22 H 0.14 7.31 6.31 -2.91 -0.02 7.29 15 23 H 0.28 12.96 8.30 -92.71 -0.77 12.19 15 24 H 0.15 4.90 7.79 -2.91 -0.02 4.87 15 25 H 0.09 2.13 9.07 73.35 0.67 2.79 15 Total: -1.00 -51.94 262.68 4.78 -47.15 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: 1.93 Total: 8.26 kcal Atomic # 6 Polarization: -40.78 SS G_CDS: 2.93 Total: -37.85 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: 0.59 Total: -54.24 kcal Atomic # 14 Polarization: 36.16 SS G_CDS: 2.03 Total: 38.19 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -2.70 Total: -1.51 kcal Total: -51.94 4.78 -47.15 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396210139.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.013 kcal (2) G-P(sol) polarization free energy of solvation -51.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds