Wall clock time and date at job start Mon Mar 30 2020 07:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.33933 * 123.02290 * 150.29951 * 3 2 1 5 5 S 1.70060 * 112.09265 * 180.26524 * 4 3 2 6 6 C 1.75778 * 92.94008 * 359.68172 * 5 4 3 7 7 C 1.38795 * 109.88169 * 0.31359 * 6 5 4 8 8 C 1.41847 * 119.12622 * 179.76519 * 7 6 5 9 9 S 1.76191 * 119.70658 * 179.97438 * 8 7 6 10 10 C 1.39120 * 120.58665 * 0.06766 * 8 7 6 11 11 C 1.36392 * 120.67461 * 359.91198 * 10 8 7 12 12 C 1.40601 * 120.14798 * 0.06578 * 11 10 8 13 13 C 1.40723 * 120.03221 * 180.02562 * 12 11 10 14 14 H 1.07996 * 120.00573 * 149.87429 * 13 12 11 15 15 C 1.39744 * 119.99887 * 329.87837 * 13 12 11 16 16 N 1.31005 * 120.00517 * 161.74393 * 15 13 12 17 17 Si 1.86807 * 119.99644 * 341.73997 * 15 13 12 18 18 H 1.48496 * 109.47022 * 95.41539 * 17 15 13 19 19 H 1.48508 * 109.46917 * 215.41473 * 17 15 13 20 20 H 1.48496 * 109.47154 * 335.41127 * 17 15 13 21 21 H 1.07996 * 123.95677 * 0.02562 * 4 3 2 22 22 H 1.40999 * 100.00151 * 90.00394 * 9 8 7 23 23 H 1.07996 * 119.66693 * 179.97438 * 10 8 7 24 24 H 1.07999 * 119.92844 * 180.02562 * 11 10 8 25 25 H 0.96994 * 120.00803 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2975 0.9764 -0.5564 5 16 4.9673 0.6935 -0.4030 6 6 4.7237 -0.8156 0.4650 7 6 3.3657 -1.0644 0.6070 8 6 2.9459 -2.2416 1.2780 9 16 1.2258 -2.5723 1.4676 10 6 3.8805 -3.1363 1.7895 11 6 5.2169 -2.8997 1.6540 12 6 5.6658 -1.7424 0.9938 13 6 7.0452 -1.5011 0.8549 14 1 7.4142 -0.9521 0.0013 15 6 7.9377 -1.9720 1.8217 16 7 9.2134 -2.0739 1.5413 17 14 7.3117 -2.4559 3.5139 18 1 7.0661 -3.9200 3.5507 19 1 8.3261 -2.0983 4.5378 20 1 6.0455 -1.7342 3.7983 21 1 2.8748 1.8398 -1.0485 22 1 0.9859 -3.3058 0.2876 23 1 3.5444 -4.0277 2.2981 24 1 5.9319 -3.6027 2.0554 25 1 9.8329 -2.4004 2.2124 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396210275.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:32 Heat of formation + Delta-G solvation = 50.526606 kcal Electronic energy + Delta-G solvation = -14184.222024 eV Core-core repulsion = 11765.483331 eV Total energy + Delta-G solvation = -2418.738693 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.26195 -37.89754 -36.26016 -35.18628 -32.45443 -30.44319 -27.58472 -25.41764 -23.48569 -22.67434 -19.91529 -19.26353 -18.06620 -17.55031 -16.85562 -16.40960 -16.10880 -15.52910 -15.23588 -14.77018 -14.32536 -14.19769 -13.90847 -13.69631 -13.41733 -13.21679 -12.73932 -12.66978 -12.56746 -12.24171 -11.67969 -11.59492 -11.29271 -11.14973 -10.13581 -9.46838 -9.12516 -8.93437 -8.66958 -6.68075 -0.34189 0.39965 0.73369 0.78249 0.99837 1.22280 1.30288 1.43241 1.51187 1.79121 1.91018 2.08183 2.32782 2.65079 3.23200 3.31287 3.74202 4.25085 4.40928 4.59178 4.72343 4.88464 5.07593 5.18130 5.20219 5.53609 5.71837 5.86778 6.11076 6.37845 6.54394 6.67695 7.90715 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.024136 B = 0.008624 C = 0.006650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.814588 B = 3246.125612 C = 4209.284074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C 0.303 3.697 3 C -0.083 4.083 4 C -0.154 4.154 5 S 0.237 5.763 6 C -0.262 4.262 7 C 0.028 3.972 8 C -0.239 4.239 9 S -0.162 6.162 10 C 0.000 4.000 11 C -0.270 4.270 12 C 0.136 3.864 13 C -0.432 4.432 14 H 0.085 0.915 15 C 0.060 3.940 16 N -0.802 5.802 17 Si 0.956 3.044 18 H -0.252 1.252 19 H -0.273 1.273 20 H -0.252 1.252 21 H 0.210 0.790 22 H 0.069 0.931 23 H 0.132 0.868 24 H 0.116 0.884 25 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.548 2.838 -0.545 3.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.134 5.134 2 C -0.014 4.014 3 C -0.103 4.103 4 C -0.294 4.294 5 S 0.506 5.494 6 C -0.379 4.379 7 C 0.017 3.983 8 C -0.356 4.356 9 S -0.004 6.004 10 C -0.022 4.022 11 C -0.294 4.294 12 C 0.130 3.870 13 C -0.458 4.458 14 H 0.103 0.897 15 C -0.162 4.162 16 N -0.424 5.424 17 Si 0.779 3.221 18 H -0.177 1.177 19 H -0.200 1.200 20 H -0.175 1.175 21 H 0.227 0.773 22 H 0.034 0.966 23 H 0.150 0.850 24 H 0.134 0.866 25 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.577 3.576 -0.720 5.109 hybrid contribution 0.173 -1.569 0.130 1.584 sum -3.404 2.007 -0.590 3.995 Atomic orbital electron populations 1.81079 1.12283 1.09620 1.10459 1.24848 0.91810 0.92227 0.92482 1.15685 0.85347 0.98582 1.10736 1.25368 1.00433 1.02314 1.01330 1.82614 0.98896 1.15186 1.52674 1.22817 0.95345 1.03360 1.16348 1.18773 0.90995 0.93153 0.95409 1.20220 0.93164 1.01791 1.20385 1.86445 1.08685 1.72860 1.32436 1.20813 0.92177 0.96469 0.92694 1.20640 0.95319 0.99835 1.13619 1.17282 0.91946 0.89159 0.88584 1.19608 0.90068 1.28602 1.07570 0.89699 1.26830 0.94362 0.90897 1.04101 1.69728 1.04915 1.29919 1.37803 0.85579 0.79464 0.80567 0.76517 1.17693 1.19958 1.17550 0.77275 0.96623 0.85006 0.86620 0.88353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -16.95 18.39 19.00 0.35 -16.60 15 2 C 0.30 10.68 13.12 88.33 1.16 11.84 15 3 C -0.08 -2.83 5.82 -20.93 -0.12 -2.95 15 4 C -0.15 -4.17 10.56 66.84 0.71 -3.46 15 5 S 0.24 7.30 22.66 -56.49 -1.28 6.02 15 6 C -0.26 -10.57 6.35 23.43 0.15 -10.42 15 7 C 0.03 1.12 6.02 -20.17 -0.12 1.00 15 8 C -0.24 -9.72 6.20 23.37 0.14 -9.58 15 9 S -0.16 -6.05 23.20 -56.49 -1.31 -7.36 15 10 C 0.00 0.00 9.67 22.05 0.21 0.21 15 11 C -0.27 -11.39 7.08 22.42 0.16 -11.23 15 12 C 0.14 6.00 5.12 -21.07 -0.11 5.90 15 13 C -0.43 -19.92 9.29 23.24 0.22 -19.70 15 14 H 0.09 4.08 8.00 -2.91 -0.02 4.06 15 15 C 0.06 2.68 5.39 85.18 0.46 3.14 15 16 N -0.80 -36.50 13.94 21.80 0.30 -36.20 15 17 Si 0.96 36.45 24.51 68.60 1.68 38.13 15 18 H -0.25 -9.08 6.70 99.48 0.67 -8.41 15 19 H -0.27 -9.81 7.11 99.48 0.71 -9.11 15 20 H -0.25 -10.17 6.87 99.48 0.68 -9.48 15 21 H 0.21 3.80 8.06 -2.91 -0.02 3.78 15 22 H 0.07 2.49 9.55 73.80 0.70 3.19 15 23 H 0.13 4.54 8.06 -2.91 -0.02 4.52 15 24 H 0.12 4.71 4.72 -2.91 -0.01 4.69 15 25 H 0.31 12.35 8.30 -92.71 -0.77 11.58 15 Total: -1.00 -50.96 254.69 4.51 -46.45 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: 1.91 Total: 4.83 kcal Atomic # 6 Polarization: -38.12 SS G_CDS: 2.85 Total: -35.27 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: 0.65 Total: -52.80 kcal Atomic # 14 Polarization: 36.45 SS G_CDS: 1.68 Total: 38.13 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -2.59 Total: -1.34 kcal Total: -50.96 4.51 -46.45 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396210275.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.979 kcal (2) G-P(sol) polarization free energy of solvation -50.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds