Wall clock time and date at job start Mon Mar 30 2020 07:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.33708 * 122.84327 * 266.37509 * 3 2 1 5 5 S 1.75149 * 111.39277 * 180.02562 * 4 3 2 6 6 C 1.76100 * 92.55494 * 0.02562 * 5 4 3 7 7 C 1.40095 * 129.37625 * 180.02562 * 6 5 4 8 8 C 1.37804 * 120.81672 * 179.72758 * 7 6 5 9 9 S 1.76198 * 120.45775 * 180.24100 * 8 7 6 10 10 C 1.46379 * 119.07626 * 0.49636 * 8 7 6 11 11 C 1.40933 * 120.46786 * 179.76164 * 10 8 7 12 12 H 1.08001 * 120.00398 * 334.00483 * 11 10 8 13 13 C 1.39871 * 120.00140 * 154.00489 * 11 10 8 14 14 N 1.30927 * 119.99871 * 334.50167 * 13 11 10 15 15 Si 1.86803 * 120.00062 * 154.49874 * 13 11 10 16 16 H 1.48498 * 109.46944 * 270.00332 * 15 13 11 17 17 H 1.48498 * 109.46906 * 29.99938 * 15 13 11 18 18 H 1.48500 * 109.46975 * 150.00115 * 15 13 11 19 19 C 1.39957 * 119.06476 * 359.49440 * 10 8 7 20 20 C 1.39986 * 109.95304 * 359.97438 * 6 5 4 21 21 H 1.07995 * 124.30130 * 0.02562 * 4 3 2 22 22 H 1.07996 * 119.58939 * 0.02562 * 7 6 5 23 23 H 1.34493 * 103.00117 * 268.46914 * 9 8 7 24 24 H 0.97006 * 120.00248 * 354.23478 * 14 13 11 25 25 H 1.07998 * 119.78401 * 180.24522 * 19 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2931 0.0720 1.1211 5 16 5.0098 0.0515 0.7740 6 6 4.7375 -0.0575 -0.9624 7 6 5.6700 -0.1227 -2.0058 8 6 5.2567 -0.2108 -3.3175 9 16 6.4377 -0.2986 -4.6221 10 6 3.8229 -0.2246 -3.6122 11 6 3.3677 -0.3087 -4.9433 12 1 3.9904 0.0478 -5.7505 13 6 2.1095 -0.8540 -5.2190 14 7 1.5717 -1.7120 -4.3891 15 14 1.1965 -0.3580 -6.7714 16 1 0.3462 0.8262 -6.4886 17 1 2.1760 -0.0213 -7.8355 18 1 0.3414 -1.4846 -7.2241 19 6 2.9105 -0.1588 -2.5530 20 6 3.3636 -0.0759 -1.2303 21 1 2.8736 0.1343 2.1143 22 1 6.7258 -0.1086 -1.7792 23 1 6.6148 0.9918 -4.9574 24 1 2.0791 -2.0333 -3.6273 25 1 1.8500 -0.1722 -2.7569 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396210352.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:40 Heat of formation + Delta-G solvation = 44.143345 kcal Electronic energy + Delta-G solvation = -14083.134148 eV Core-core repulsion = 11664.118656 eV Total energy + Delta-G solvation = -2419.015492 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.08681 -37.96433 -36.55118 -34.97049 -31.40119 -30.48055 -27.43089 -25.32541 -23.53932 -22.68298 -20.03936 -18.92683 -18.47426 -17.74531 -16.60650 -16.24565 -15.90158 -15.35285 -15.26908 -14.83864 -14.52125 -14.26399 -13.97856 -13.66511 -13.49281 -13.16010 -12.85346 -12.50688 -12.11980 -12.02129 -11.77606 -11.49779 -11.28247 -10.98660 -10.35705 -9.51832 -9.26291 -8.78672 -8.68666 -6.55938 -0.43862 0.53895 0.62832 0.70331 0.99103 1.17437 1.48032 1.55423 1.58730 1.75096 2.01342 2.25203 2.29558 2.56381 3.10976 3.28021 3.72461 4.04987 4.54545 4.58093 4.73581 4.88391 5.12906 5.26560 5.36664 5.50424 5.66041 5.92382 6.03402 6.39818 6.50074 6.71219 7.87496 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.016889 B = 0.009097 C = 0.006061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.489495 B = 3077.260601 C = 4618.877307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C 0.294 3.706 3 C -0.085 4.085 4 C -0.095 4.095 5 S 0.172 5.828 6 C -0.287 4.287 7 C 0.019 3.981 8 C -0.210 4.210 9 S -0.117 6.117 10 C 0.101 3.899 11 C -0.497 4.497 12 H 0.094 0.906 13 C 0.005 3.995 14 N -0.796 5.796 15 Si 1.112 2.888 16 H -0.269 1.269 17 H -0.250 1.250 18 H -0.270 1.270 19 C -0.242 4.242 20 C 0.008 3.992 21 H 0.213 0.787 22 H 0.142 0.858 23 H 0.053 0.947 24 H 0.289 0.711 25 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.084 2.975 6.190 9.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.144 5.144 2 C -0.021 4.021 3 C -0.104 4.104 4 C -0.235 4.235 5 S 0.435 5.565 6 C -0.402 4.402 7 C -0.005 4.005 8 C -0.325 4.325 9 S 0.041 5.959 10 C 0.094 3.906 11 C -0.524 4.524 12 H 0.112 0.888 13 C -0.214 4.214 14 N -0.417 5.417 15 Si 0.928 3.072 16 H -0.195 1.195 17 H -0.173 1.173 18 H -0.195 1.195 19 C -0.266 4.266 20 C 0.001 3.999 21 H 0.230 0.770 22 H 0.160 0.840 23 H 0.018 0.982 24 H 0.102 0.898 25 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.867 2.503 5.662 8.529 hybrid contribution -0.381 1.062 0.364 1.186 sum 5.487 3.565 6.026 8.895 Atomic orbital electron populations 1.81154 1.12796 1.11681 1.08790 1.25393 0.92291 0.92132 0.92333 1.15899 0.84432 1.16130 0.93976 1.25913 0.98270 0.97503 1.01779 1.83258 1.00275 1.76980 0.95968 1.21962 0.94901 1.24982 0.98399 1.20686 0.98168 0.92166 0.89480 1.22200 0.94176 1.21634 0.94524 1.85092 1.51832 1.11596 1.47409 1.18832 0.90393 0.88005 0.93404 1.20938 1.03271 1.34364 0.93861 0.88761 1.28491 0.95734 0.91642 1.05576 1.70570 1.40037 1.19163 1.11940 0.83070 0.75828 0.77322 0.70931 1.19462 1.17321 1.19501 1.20596 0.97520 1.17472 0.91046 1.18780 0.91665 0.97492 0.91942 0.77008 0.84036 0.98245 0.89828 0.89793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -19.46 18.54 19.00 0.35 -19.11 15 2 C 0.29 11.36 15.28 88.33 1.35 12.71 15 3 C -0.09 -2.99 5.82 -20.85 -0.12 -3.11 15 4 C -0.10 -2.40 10.82 66.79 0.72 -1.67 15 5 S 0.17 4.32 23.21 -56.49 -1.31 3.01 15 6 C -0.29 -10.54 6.44 23.14 0.15 -10.39 15 7 C 0.02 0.73 9.79 22.62 0.22 0.95 15 8 C -0.21 -9.19 6.32 24.29 0.15 -9.04 15 9 S -0.12 -4.48 24.54 -56.49 -1.39 -5.87 15 10 C 0.10 5.00 5.43 -20.08 -0.11 4.89 15 11 C -0.50 -24.85 8.46 23.33 0.20 -24.65 15 12 H 0.09 4.56 7.23 -2.91 -0.02 4.54 15 13 C 0.01 0.24 4.93 85.22 0.42 0.66 15 14 N -0.80 -41.98 12.33 21.82 0.27 -41.71 15 15 Si 1.11 41.79 30.00 68.60 2.06 43.85 15 16 H -0.27 -9.91 7.11 99.48 0.71 -9.21 15 17 H -0.25 -8.45 7.11 99.48 0.71 -7.74 15 18 H -0.27 -9.99 7.11 99.48 0.71 -9.28 15 19 C -0.24 -11.97 7.71 23.13 0.18 -11.80 15 20 C 0.01 0.34 5.99 -20.20 -0.12 0.22 15 21 H 0.21 3.38 8.06 -2.91 -0.02 3.35 15 22 H 0.14 4.44 8.06 -2.91 -0.02 4.42 15 23 H 0.05 1.91 9.07 73.35 0.67 2.58 15 24 H 0.29 15.89 6.71 -92.70 -0.62 15.26 15 25 H 0.08 4.56 6.41 -2.91 -0.02 4.54 15 Total: -1.00 -57.69 262.46 5.10 -52.59 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: 2.08 Total: 8.47 kcal Atomic # 6 Polarization: -44.27 SS G_CDS: 3.04 Total: -41.23 kcal Atomic # 7 Polarization: -61.44 SS G_CDS: 0.62 Total: -60.82 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.06 Total: 43.85 kcal Atomic # 16 Polarization: -0.16 SS G_CDS: -2.70 Total: -2.86 kcal Total: -57.69 5.10 -52.59 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396210352.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.734 kcal (2) G-P(sol) polarization free energy of solvation -57.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds