Wall clock time and date at job start Mon Mar 30 2020 07:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39484 * 120.54913 * 110.15583 * 3 2 1 5 5 S 1.76203 * 119.74730 * 359.97438 * 4 3 2 6 6 C 1.40933 * 120.50699 * 179.97438 * 4 3 2 7 7 S 1.76135 * 129.62105 * 179.97438 * 6 4 3 8 8 C 1.75226 * 92.24286 * 180.02562 * 7 6 4 9 9 C 1.31835 * 111.45027 * 359.97438 * 8 7 6 10 10 C 1.40003 * 120.75808 * 0.02562 * 6 4 3 11 11 C 1.40832 * 119.96757 * 0.02562 * 10 6 4 12 12 C 1.39772 * 120.68090 * 359.97438 * 11 10 6 13 13 C 1.40692 * 120.40599 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00301 * 150.01078 * 13 12 11 15 15 C 1.40061 * 119.99684 * 330.00782 * 13 12 11 16 16 N 1.30793 * 119.99613 * 161.80798 * 15 13 12 17 17 Si 1.86802 * 120.00235 * 341.80202 * 15 13 12 18 18 H 1.48493 * 109.46767 * 95.39252 * 17 15 13 19 19 H 1.48492 * 109.47203 * 215.39318 * 17 15 13 20 20 H 1.48503 * 109.46667 * 335.39511 * 17 15 13 21 21 H 1.40995 * 99.99705 * 269.97785 * 5 4 3 22 22 H 1.07997 * 124.27148 * 179.97438 * 8 7 6 23 23 H 1.08003 * 122.51997 * 180.02562 * 9 8 7 24 24 H 1.08001 * 119.66048 * 179.97438 * 11 10 6 25 25 H 0.97001 * 119.99337 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2767 0.4149 -1.1277 5 16 2.4034 0.9412 -2.5647 6 6 4.6860 0.4157 -1.1265 7 16 5.8100 0.8829 -2.3995 8 6 7.2019 0.5171 -1.3998 9 6 6.8393 0.0811 -0.2096 10 6 5.4013 0.0012 0.0034 11 6 4.7120 -0.4232 1.1558 12 6 3.3146 -0.4358 1.1868 13 6 2.6318 -0.8605 2.3414 14 1 1.6611 -0.4496 2.5765 15 6 3.2111 -1.8161 3.1858 16 7 2.7759 -1.9554 4.4113 17 14 4.6050 -2.8917 2.5616 18 1 5.9060 -2.2902 2.9494 19 1 4.4891 -4.2470 3.1572 20 1 4.5277 -2.9929 1.0821 21 1 2.2836 -0.2892 -3.2427 22 1 8.2271 0.6340 -1.7184 23 1 7.5552 -0.1964 0.5499 24 1 5.2687 -0.7422 2.0245 25 1 3.1773 -2.6169 4.9962 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396210548.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:01 Heat of formation + Delta-G solvation = 64.914202 kcal Electronic energy + Delta-G solvation = -14194.525251 eV Core-core repulsion = 11776.410451 eV Total energy + Delta-G solvation = -2418.114800 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.53694 -35.93260 -34.74797 -33.49474 -30.93631 -29.16211 -26.06776 -23.13970 -22.50473 -20.33356 -18.58953 -17.79915 -16.91562 -16.23626 -15.49634 -15.00358 -14.29311 -13.78672 -13.44877 -13.05040 -12.97300 -12.93321 -12.43752 -12.03440 -11.74918 -11.71197 -11.44248 -11.15688 -10.94602 -10.65570 -10.25048 -10.09600 -9.80170 -9.54831 -8.77326 -7.85163 -7.83403 -7.42071 -7.29040 -4.93541 0.98198 1.68811 2.06289 2.21014 2.47424 2.64510 2.84530 2.95253 3.01190 3.05242 3.61067 3.64478 3.80126 4.19691 4.86307 4.89355 5.16915 5.64344 5.80364 6.00284 6.16307 6.30622 6.47877 6.55032 6.68417 6.92431 7.22611 7.25548 7.81951 8.00026 8.21400 8.44618 9.56643 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.018123 B = 0.010308 C = 0.006892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.647988 B = 2715.678830 C = 4061.907837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C 0.292 3.708 3 C -0.070 4.070 4 C 0.023 3.977 5 S -0.169 6.169 6 C -0.211 4.211 7 S 0.054 5.946 8 C -0.194 4.194 9 C -0.127 4.127 10 C -0.009 4.009 11 C -0.198 4.198 12 C 0.116 3.884 13 C -0.408 4.408 14 H 0.102 0.898 15 C 0.082 3.918 16 N -0.770 5.770 17 Si 0.910 3.090 18 H -0.260 1.260 19 H -0.282 1.282 20 H -0.238 1.238 21 H 0.103 0.897 22 H 0.157 0.843 23 H 0.136 0.864 24 H 0.118 0.882 25 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.766 0.530 -6.551 10.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.133 5.133 2 C -0.021 4.021 3 C -0.079 4.079 4 C -0.096 4.096 5 S -0.010 6.010 6 C -0.328 4.328 7 S 0.313 5.687 8 C -0.328 4.328 9 C -0.159 4.159 10 C -0.017 4.017 11 C -0.220 4.220 12 C 0.108 3.892 13 C -0.435 4.435 14 H 0.120 0.880 15 C -0.142 4.142 16 N -0.390 5.390 17 Si 0.734 3.266 18 H -0.186 1.186 19 H -0.209 1.209 20 H -0.161 1.161 21 H 0.068 0.932 22 H 0.175 0.825 23 H 0.153 0.847 24 H 0.136 0.864 25 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.343 1.477 -8.436 10.657 hybrid contribution 1.702 -2.124 1.895 3.316 sum 8.045 -0.647 -6.541 10.389 Atomic orbital electron populations 1.81032 1.12063 1.10998 1.09234 1.25117 0.92151 0.92662 0.92152 1.17170 0.83963 1.12370 0.94384 1.20106 0.91981 1.03275 0.94276 1.86805 1.74872 1.17076 1.22259 1.21838 0.94544 1.17588 0.98865 1.83788 0.94630 1.73325 1.16913 1.24985 1.02441 1.06768 0.98564 1.21053 0.94305 1.02993 0.97509 1.19050 0.91331 0.97994 0.93333 1.20842 0.93101 1.11010 0.97048 1.18136 0.90650 0.90535 0.89920 1.19557 1.05303 1.17555 1.01072 0.87983 1.26352 0.97307 0.97171 0.93407 1.69638 1.36497 1.27728 1.05139 0.86281 0.79848 0.78119 0.82359 1.18569 1.20882 1.16057 0.93226 0.82550 0.84676 0.86411 0.89307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.50 18.54 41.84 0.78 -9.73 15 2 C 0.29 6.56 13.26 -22.48 -0.30 6.26 15 3 C -0.07 -1.53 5.95 -104.02 -0.62 -2.15 15 4 C 0.02 0.47 6.18 -38.10 -0.24 0.23 15 5 S -0.17 -3.01 24.37 -107.50 -2.62 -5.63 15 6 C -0.21 -4.10 6.36 -37.90 -0.24 -4.34 15 7 S 0.05 0.86 22.81 -107.50 -2.45 -1.59 15 8 C -0.19 -2.78 11.01 28.83 0.32 -2.46 15 9 C -0.13 -2.03 10.37 -38.55 -0.40 -2.43 15 10 C -0.01 -0.17 6.01 -105.33 -0.63 -0.80 15 11 C -0.20 -4.15 7.22 -38.03 -0.27 -4.42 15 12 C 0.12 2.62 5.25 -104.91 -0.55 2.07 15 13 C -0.41 -9.81 9.01 -37.97 -0.34 -10.15 15 14 H 0.10 2.66 7.65 -52.49 -0.40 2.26 15 15 C 0.08 1.89 5.40 -17.31 -0.09 1.80 15 16 N -0.77 -18.07 13.93 55.55 0.77 -17.30 15 17 Si 0.91 17.88 24.53 -169.99 -4.17 13.71 15 18 H -0.26 -4.81 6.72 56.52 0.38 -4.43 15 19 H -0.28 -5.38 7.11 56.52 0.40 -4.98 15 20 H -0.24 -4.82 6.87 56.52 0.39 -4.43 15 21 H 0.10 1.67 9.55 96.90 0.93 2.60 15 22 H 0.16 1.70 8.06 -52.49 -0.42 1.27 15 23 H 0.14 1.84 8.06 -52.48 -0.42 1.42 15 24 H 0.12 2.37 4.72 -52.49 -0.25 2.13 15 25 H 0.30 6.17 8.29 -40.82 -0.34 5.83 15 LS Contribution 257.22 15.07 3.88 3.88 Total: -1.00 -24.46 257.22 -6.92 -31.38 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: 0.26 Total: 1.67 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: -3.37 Total: -16.39 kcal Atomic # 7 Polarization: -28.57 SS G_CDS: 1.55 Total: -27.02 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -4.17 Total: 13.71 kcal Atomic # 16 Polarization: -2.15 SS G_CDS: -5.07 Total: -7.22 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -24.46 -6.92 -31.38 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396210548.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.299 kcal (2) G-P(sol) polarization free energy of solvation -24.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds