Wall clock time and date at job start Mon Mar 30 2020 07:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39484 * 120.54913 * 110.15583 * 3 2 1 5 5 S 1.76203 * 119.74730 * 359.97438 * 4 3 2 6 6 C 1.40933 * 120.50699 * 179.97438 * 4 3 2 7 7 S 1.76135 * 129.62105 * 179.97438 * 6 4 3 8 8 C 1.75226 * 92.24286 * 180.02562 * 7 6 4 9 9 C 1.31835 * 111.45027 * 359.97438 * 8 7 6 10 10 C 1.40003 * 120.75808 * 0.02562 * 6 4 3 11 11 C 1.40832 * 119.96757 * 0.02562 * 10 6 4 12 12 C 1.39772 * 120.68090 * 359.97438 * 11 10 6 13 13 C 1.40692 * 120.40599 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00301 * 150.01078 * 13 12 11 15 15 C 1.40061 * 119.99684 * 330.00782 * 13 12 11 16 16 N 1.30793 * 119.99613 * 161.80798 * 15 13 12 17 17 Si 1.86802 * 120.00235 * 341.80202 * 15 13 12 18 18 H 1.48493 * 109.46767 * 95.39252 * 17 15 13 19 19 H 1.48492 * 109.47203 * 215.39318 * 17 15 13 20 20 H 1.48503 * 109.46667 * 335.39511 * 17 15 13 21 21 H 1.40995 * 99.99705 * 269.97785 * 5 4 3 22 22 H 1.07997 * 124.27148 * 179.97438 * 8 7 6 23 23 H 1.08003 * 122.51997 * 180.02562 * 9 8 7 24 24 H 1.08001 * 119.66048 * 179.97438 * 11 10 6 25 25 H 0.97001 * 119.99337 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2767 0.4149 -1.1277 5 16 2.4034 0.9412 -2.5647 6 6 4.6860 0.4157 -1.1265 7 16 5.8100 0.8829 -2.3995 8 6 7.2019 0.5171 -1.3998 9 6 6.8393 0.0811 -0.2096 10 6 5.4013 0.0012 0.0034 11 6 4.7120 -0.4232 1.1558 12 6 3.3146 -0.4358 1.1868 13 6 2.6318 -0.8605 2.3414 14 1 1.6611 -0.4496 2.5765 15 6 3.2111 -1.8161 3.1858 16 7 2.7759 -1.9554 4.4113 17 14 4.6050 -2.8917 2.5616 18 1 5.9060 -2.2902 2.9494 19 1 4.4891 -4.2470 3.1572 20 1 4.5277 -2.9929 1.0821 21 1 2.2836 -0.2892 -3.2427 22 1 8.2271 0.6340 -1.7184 23 1 7.5552 -0.1964 0.5499 24 1 5.2687 -0.7422 2.0245 25 1 3.1773 -2.6169 4.9962 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396210548.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:01 Heat of formation + Delta-G solvation = 52.310915 kcal Electronic energy + Delta-G solvation = -14195.071771 eV Core-core repulsion = 11776.410451 eV Total energy + Delta-G solvation = -2418.661320 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.998 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.09887 -37.59568 -36.38498 -35.06845 -32.57844 -30.65615 -27.73613 -24.65135 -24.03951 -21.79158 -20.18759 -19.38175 -18.41284 -17.70175 -17.07561 -16.53306 -15.83791 -15.27722 -14.97108 -14.61210 -14.52512 -14.47047 -14.04334 -13.68963 -13.39929 -13.25576 -12.94949 -12.72154 -12.49798 -12.15350 -11.78078 -11.56060 -11.30567 -11.10811 -10.29159 -9.37589 -9.28011 -9.10278 -8.69340 -6.67297 -0.55889 0.18594 0.54213 0.85142 1.05459 1.27038 1.29231 1.40998 1.48994 1.59231 1.85730 2.03469 2.20826 2.46610 3.18742 3.19754 3.90586 4.23184 4.27082 4.66045 4.72355 4.82878 4.98512 5.06179 5.14284 5.43550 5.64957 5.66786 6.02138 6.31223 6.46743 6.67296 7.95402 Molecular weight = 261.00amu Principal moments of inertia in cm(-1) A = 0.018123 B = 0.010308 C = 0.006892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.647988 B = 2715.678830 C = 4061.907837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C 0.298 3.702 3 C -0.096 4.096 4 C 0.018 3.982 5 S -0.161 6.161 6 C -0.222 4.222 7 S 0.085 5.915 8 C -0.166 4.166 9 C -0.147 4.147 10 C -0.014 4.014 11 C -0.204 4.204 12 C 0.112 3.888 13 C -0.447 4.447 14 H 0.061 0.939 15 C 0.053 3.947 16 N -0.813 5.813 17 Si 0.958 3.042 18 H -0.234 1.234 19 H -0.273 1.273 20 H -0.248 1.248 21 H 0.123 0.877 22 H 0.203 0.797 23 H 0.164 0.836 24 H 0.126 0.874 25 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.344 0.629 -8.749 15.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.156 5.156 2 C -0.014 4.014 3 C -0.105 4.105 4 C -0.102 4.102 5 S -0.003 6.003 6 C -0.340 4.340 7 S 0.345 5.655 8 C -0.299 4.299 9 C -0.178 4.178 10 C -0.023 4.023 11 C -0.226 4.226 12 C 0.103 3.897 13 C -0.475 4.475 14 H 0.079 0.921 15 C -0.167 4.167 16 N -0.436 5.436 17 Si 0.778 3.222 18 H -0.158 1.158 19 H -0.199 1.199 20 H -0.172 1.172 21 H 0.087 0.913 22 H 0.220 0.780 23 H 0.182 0.818 24 H 0.143 0.857 25 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 9.923 1.591 -10.634 14.631 hybrid contribution 0.697 -2.007 2.293 3.126 sum 10.620 -0.417 -8.341 13.510 Atomic orbital electron populations 1.81000 1.12586 1.12052 1.10004 1.25358 0.92462 0.92060 0.91526 1.17317 0.83625 1.14256 0.95346 1.20287 0.92833 1.02380 0.94650 1.86720 1.74805 1.17950 1.20838 1.22373 0.94872 1.16137 1.00599 1.83791 0.94037 1.72307 1.15337 1.25531 1.03882 1.03451 0.97080 1.21219 0.92593 1.04710 0.99268 1.19510 0.93588 0.96647 0.92552 1.20942 0.92338 1.11176 0.98167 1.18234 0.91690 0.90241 0.89492 1.19394 1.04567 1.20255 1.03326 0.92063 1.27002 0.99138 0.97437 0.93168 1.69658 1.38490 1.29243 1.06176 0.85581 0.78460 0.77113 0.81038 1.15835 1.19945 1.17151 0.91274 0.77972 0.81846 0.85689 0.88363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -22.91 18.54 19.00 0.35 -22.56 15 2 C 0.30 13.91 13.26 88.33 1.17 15.08 15 3 C -0.10 -4.31 5.95 -19.48 -0.12 -4.43 15 4 C 0.02 0.70 6.18 23.23 0.14 0.85 15 5 S -0.16 -5.51 24.37 -56.49 -1.38 -6.88 15 6 C -0.22 -8.09 6.36 23.36 0.15 -7.94 15 7 S 0.09 2.35 22.81 -56.49 -1.29 1.07 15 8 C -0.17 -3.76 11.01 67.03 0.74 -3.02 15 9 C -0.15 -4.01 10.37 23.37 0.24 -3.76 15 10 C -0.01 -0.50 6.01 -20.32 -0.12 -0.62 15 11 C -0.20 -8.39 7.22 23.28 0.17 -8.22 15 12 C 0.11 5.18 5.25 -20.05 -0.11 5.07 15 13 C -0.45 -22.85 9.01 23.31 0.21 -22.64 15 14 H 0.06 3.50 7.65 -2.91 -0.02 3.48 15 15 C 0.05 2.52 5.40 85.29 0.46 2.98 15 16 N -0.81 -39.95 13.93 21.85 0.30 -39.64 15 17 Si 0.96 36.38 24.53 68.60 1.68 38.06 15 18 H -0.23 -7.86 6.72 99.48 0.67 -7.19 15 19 H -0.27 -9.87 7.11 99.48 0.71 -9.17 15 20 H -0.25 -9.72 6.87 99.48 0.68 -9.04 15 21 H 0.12 3.70 9.55 73.80 0.70 4.41 15 22 H 0.20 2.81 8.06 -2.91 -0.02 2.78 15 23 H 0.16 3.55 8.06 -2.91 -0.02 3.52 15 24 H 0.13 4.86 4.72 -2.91 -0.01 4.85 15 25 H 0.31 13.17 8.29 -92.71 -0.77 12.40 15 Total: -1.00 -55.09 257.22 4.52 -50.56 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: 1.91 Total: 6.05 kcal Atomic # 6 Polarization: -29.59 SS G_CDS: 2.94 Total: -26.65 kcal Atomic # 7 Polarization: -62.86 SS G_CDS: 0.66 Total: -62.20 kcal Atomic # 14 Polarization: 36.38 SS G_CDS: 1.68 Total: 38.06 kcal Atomic # 16 Polarization: -3.15 SS G_CDS: -2.67 Total: -5.82 kcal Total: -55.09 4.52 -50.56 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396210548.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.874 kcal (2) G-P(sol) polarization free energy of solvation -55.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds